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Oryza sativa
cluster # 11120 cluster # 11120       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11120#0 length = 1327 sequences # 6  
consensus_11120#1 length = 277 sequences # 1  
consensus_11120#2 length = 254 sequences # 1  

consensusID : consensus_11120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1327
fasta sequence
                              [ACGCCCTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCNNGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTCCTCCTCCGCGTCCGCCGCTCTGTCCTCCTCCAGCCGCGAGGCTTTTCATAAGGTGGTCCGAAGTTGGGCTTCAAAGAAATTCATGACTGGATGTGTAATTCTCTTCCCCATAGCAATAACATTCTACATCACATGGTGGTTCATTCATTTTGTTGACGGATTCTTCTCGCCAATCTATGCTCAACTGGGAATCAACATGTTTGGTCTTGGCTTTATCACTTCTGTTACCTTCATATTTGTGGTTGGAGTCTTCATGTCATCTTGGGTTGGAGCATCTGTCCTTAGCCTTGGTGAGTGGATTATTAAGCGCATGCCACTTGTCCGTCATATCTACAATGCATCCAAGCAAATAAGTGCTGCAATATCACCAGATCAGAACAAACAGGCATTCAAGGAAGTGGTCATCATAAGGCATCCTCGTATTGGAGAATATGCATTTGGTTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGGTCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATCTTTATATTGGTGATATCTTCATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAATTGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCACAGACAATTCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACACGATGTATTAGTGGTCTGTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGC-GTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK059220             [ACGCCCTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCCCGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTCCTCCTCCGCGTCCGCCGCTCTGTCCTCCTCCAGCCGCGAGGCTTTTCATAAGGTGGTCCGAAGTTGGGCTTCAAAGAAATTCATGACTGGATGTGTAATTCTCTTCCCCATAGCAATAACATTCTACATCACATGGTGGTTCATTCATTTTGTTGACGGATTCTTCTCGCCAATCTATGCTCAACTGGGAATCAACATGTTTGGTCTTGGCTTTATCACTTCTGTTACCTTCATATTTGTGGTTGGAGTCTTCATGTCATCTTGGGTTGGAGCATCTGTCCTTAGCCTTGGTGAGTGGATTATTAAGCGCATGCCACTTGTCCGTCATATCTACAATGCATCCAAGCAAATAAGTGCTGCAATATCACCAGATCAGAACAAACAGGCATTCAAGGAAGTGGTCATCATAAGGCATCCTCGTATTGGAGAATATGCATTTGGTTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGGTCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATCTTTATATTGGTGATATCTTCATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAATTGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCACAGACAATTCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACACGATGTATTAGTGGTCTGTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAG                                                                                                                                                                                 ]
[+] EMBL AU164157             [     CTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCNNGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTNCTCCTCCGCGTCCGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU069304             [                  CGCCGAGTCGCATCCCCGTTTCGCAGCGATCGCNACGACCGAGGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGACGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCAT CNNGTNTCCGGCGGCGGNTCGGCCCCCGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU166943             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGCATCGAAATTGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCCCAGACAATTCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACNCGATGTATTAGTGGTCTGTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTNTACCACGTTNTATACAANAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGCGGTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCC                                                                                                      ]
[+] EMBL CF331744             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGC GTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF331649             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGC GTTGACAGCACTTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA    ]


>consensus_11120#0 ACGCCCTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGA GGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGA CGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCN NGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTC CTCCTCCGCGTCCGCCGCTCTGTCCTCCTCCAGCCGCGAGGCTTTTCATAAGGTGGTCCG AAGTTGGGCTTCAAAGAAATTCATGACTGGATGTGTAATTCTCTTCCCCATAGCAATAAC ATTCTACATCACATGGTGGTTCATTCATTTTGTTGACGGATTCTTCTCGCCAATCTATGC TCAACTGGGAATCAACATGTTTGGTCTTGGCTTTATCACTTCTGTTACCTTCATATTTGT GGTTGGAGTCTTCATGTCATCTTGGGTTGGAGCATCTGTCCTTAGCCTTGGTGAGTGGAT TATTAAGCGCATGCCACTTGTCCGTCATATCTACAATGCATCCAAGCAAATAAGTGCTGC AATATCACCAGATCAGAACAAACAGGCATTCAAGGAAGTGGTCATCATAAGGCATCCTCG TATTGGAGAATATGCATTTGGTTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGG TCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATCTTTATATTGGTGATATCTT CATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAAT TGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCACAGACAAT TCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACT AAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACACGATGTATTAGTGGTCT GTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTAGGTGACTCATATATTCC TTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGA ATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGCGTTGACAGCACTTG CCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAA



consensusID : consensus_11120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence
                              [GAACAGGAGCAAGCAGAAGCTGAGATNTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACCCNATGTATTAGTGGTCTGTCGAGCTNTAGGATCNCAAGGATNTGTAAATTAGTANAAGTAGGTGACTCATATATTCCTTGTTCATCCGGTTGGCAGTTTGTACCATGGTTTGCNCTTTNTACCNCGGTTNTANACAANAATGCTTNGTAGTTGTAACGCCAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU172749             [GAACAGGAGCAAGCAGAAGCTGAGATNTCTCCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACCCNATGTATTAGTGGTCTGTCGAGCTNTAGGATCNCAAGGATNTGTAAATTAGTANAAGTAGGTGACTCATATATTCCTTGTTCATCCGGTTGGCAGTTTGTACCATGGTTTGCNCTTTNTACCNCGGTTNTANACAANAATGCTTNGTAGTTGTAACGCCAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11120#1 GAACAGGAGCAAGCAGAAGCTGAGATNTCTCCTTGGTTGCAACTTGACTAAAATTATCAG ACCAAGTACAGTGAACTAGATCCTGAGCAACCCNATGTATTAGTGGTCTGTCGAGCTNTA GGATCNCAAGGATNTGTAAATTAGTANAAGTAGGTGACTCATATATTCCTTGTTCATCCG GTTGGCAGTTTGTACCATGGTTTGCNCTTTNTACCNCGGTTNTANACAANAATGCTTNGT AGTTGTAACGCCAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11120#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence
                              [CATGGACTGAGGGAGTAGAAATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGCGTTGACAGCACTTGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAA]

[+] EMBL CF310901             [CATGGACTGAGGGAGTAGAAATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCTTACTGTTTTGAGCGTTGACAGCACTTGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAA]


>consensus_11120#2 CATGGACTGAGGGAGTAGAAATATTCCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTT GCACTTTCTACCACGTTCTATACAAGAATGCTTCGTAGTTGTAACGCCTTCTTTACTTCT TACTGTTTTGAGCGTTGACAGCACTTGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAA AAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11120#0      ACGCCCTCATCTCGCTCGCGCCGAGCCGCATCCCCGTTTCGCAGCGATCGCGACGACCGA 60
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      GGCCGCCCGGGAGGTCGCGGCGGCGGCGGCGGCGGTGGCAGGGAGGTGCCCGATGGGCGA 120
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      CGAGAAGTCTCCGCTGAGCCAGATGGGCAGCCGCGACCGGGACCGGGAGCTCCTCATCCN 180
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      NGTCTCCGGCGGCGGCTCGGCCCCCGGAGACGGCGACGGGGACGGCGACAGGGCGGCCTC 240
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      CTCCTCCGCGTCCGCCGCTCTGTCCTCCTCCAGCCGCGAGGCTTTTCATAAGGTGGTCCG 300
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      AAGTTGGGCTTCAAAGAAATTCATGACTGGATGTGTAATTCTCTTCCCCATAGCAATAAC 360
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      ATTCTACATCACATGGTGGTTCATTCATTTTGTTGACGGATTCTTCTCGCCAATCTATGC 420
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      TCAACTGGGAATCAACATGTTTGGTCTTGGCTTTATCACTTCTGTTACCTTCATATTTGT 480
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      GGTTGGAGTCTTCATGTCATCTTGGGTTGGAGCATCTGTCCTTAGCCTTGGTGAGTGGAT 540
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      TATTAAGCGCATGCCACTTGTCCGTCATATCTACAATGCATCCAAGCAAATAAGTGCTGC 600
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      AATATCACCAGATCAGAACAAACAGGCATTCAAGGAAGTGGTCATCATAAGGCATCCTCG 660
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      TATTGGAGAATATGCATTTGGTTTCATTACATCATCAGTCTCTCTCCAGAGTTATACTGG 720
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      TCAAGAGGAACTGTACTGCGTGTATGTCCCAACCAACCATCTTTATATTGGTGATATCTT 780
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      CATGGTAAATTCGAAGGATGTTATAAGGCCAAATCTTTCTGTCCGTGAAGGCATCGAAAT 840
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      TGTTGTATCTGGTGGCATGTCGATGCCCCAAATTCTATCAACTCTGGACCCACAGACAAT 900
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      TCTTGGAGACAGAACAGGAGCAAGCAGAAGCTGAGATCTCTCCTTGGTTGCAACTTGACT 960
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      AAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAACACGATGTATTAGTGGTCT 1020
consensus_11120#2      ------------------------------------------------------------
consensus_11120#1      ------------------------------------------------------------
                                                                                   

consensus_11120#0      GTCGAGCTCTAGGATCACAAGGATCTGTAAATTAGTAGAAGTA-GGTGACTCATATAT-T 1078
consensus_11120#2      ---------------------------------CATGGACTGA-GGGAGTAGAAATAT-T 25
consensus_11120#1      ------------------------------GAACAGGAGCAAGCAGAAGCTGAGATNTCT 30
                                                                    *      * ** * *

consensus_11120#0      CCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAA 1138
consensus_11120#2      CCTTGTTCATCCGTTGGCAGTTTGTACCATGGTTTGCACTTTCTACCACGTTCTATACAA 85
consensus_11120#1      CCTTGGTTGCAACTTGACTAAAATTATCAGACCAAGTACAGTGAACTAGATCCTGAGCAA 90
                       ***** *      *** *      ** **      * **  *  ** *  * **   ***

consensus_11120#0      GAATGCTTCGTAGTTGTAACGCCTTCTTTACT-TCTTACTGTTTTGAGCGTTGACAGCAC 1197
consensus_11120#2      GAATGCTTCGTAGTTGTAACGCCTTCTTTACT-TCTTACTGTTTTGAGCGTTGACAGCAC 144
consensus_11120#1      CCCNATGTATTAGTGGTCTGTCGAGCTNTAGGATCNCAAGGATNTGTAAATTAGTANAAG 150
                              *  **** **    *   ** **   **  *  * * **    **   *  * 

consensus_11120#0      TTGCCTTTAACCATGTTGAAGGTCATCCTGGTGAACTCTTGAAATAAAAAAAAAAAAAAA 1257
consensus_11120#2      TTGCCTTTAAAAAAAAAAAAA--------------------AAAAAAAAAAAAAAAAAAA 184
consensus_11120#1      TAGGTGACTCATATATTCCTTGTTCATCCGGTTGGCAGTTTGTACCATGGTTTGCNCTTT 210
                       * *         *                              *  *             

consensus_11120#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1317
consensus_11120#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAA 244
consensus_11120#1      NTACCNCGGTTNTANACAANAATGCTTNGTAGTTGTAACGCCAAAAAAAAAAAAAAAAAA 270
                         *          * * ** **        *     **    ********  ********

consensus_11120#0      AAAAAAAAAA 1327
consensus_11120#2      AAAAAAAAAA 254
consensus_11120#1      AAAAAAA--- 277
                       *******   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)