Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11122 cluster # 11122       Sequences # 8       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11122#0 length = 1231 sequences # 3  
consensus_11122#1 length = 801 sequences # 1  
consensus_11122#2 length = 702 sequences # 1  
consensus_11122#3 length = 367 sequences # 1  
consensus_11122#4 length = 188 sequences # 2  

consensusID : consensus_11122#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1231
fasta sequence
                              [CGCGCCGCCTGAGCCCTCGCGTCGCGACACCGCTCGCCGCGGCGGCGCTGCTCCTCTCCAGCGACCACGCGAGGAGGGAGAAGAGGAGGAAGAAGGCGAGAAGGGAGCAAGCTAGAAGAGTGGGAGAGGGGGACATCTAGGTCGTCGACGGCCTCAATGGGGTGGGGCATACCGACGCGGCCGCCGGCGACGTCGACGCCGTCGCGGGTGCAGGCGCTGTACGAGCTCTGCAAGCGCACCTTCCCGTCGCCGTCCTCCGTCGCCGCGTCCTCCTCGCCGTCGTCTCCACCTCCCGACCACGCCATCGGCGCCATCTCCTCTCTCATGGATACAATCACTCCTGTGGATGTTGGACTCAGAGATGATAATCTTGAGGATGGAAGAGGATTTGGGTTCTTTGAATCAAACTTCTTGAAGAATTCAGCAAGGGTTGCTAGATGGGCGCAACCCATAACCTACCTGCATGTCTACGAGTGTGACGCCTTCTCTATTGGAATATTCTGCTTACCAACATCGGCGGTTATTCCTCTCCATGATCATCCGGGAATGACTGTGTTGAGCAAATTACTCTATGGTTCGATGCATGTCAAATCGTATGATTGGGTAGAGCCTGCTGTTCTAGCAAATGGCAAGCCAGTGAAACTTGGAAAGTTACATACGGATGATGTTCTGAATGCCCCTTGTCCAACTGCTGTTTTGTATCCCCAAAGTGGTGGGAACATGCACTGCTTCACTTCAGTAAAATCATGTGCTGTTCTTGATGTCATTGCCCCACCATACTCTGAATCTTCTGGCCGTGTTTGCACCTATTTTCACGATTATCCATTTTCTAGCTTCT-CAGCT-GGACAAGCAAAAGTAGTCCATGGGCCAGATAATTATGCTTGGCTTGAGGCCTTAATCGTACCGGTGAATATTAATATGCGCCCTGGCACGTACACTGGCCCAACTATACAGGAACATCTGCCATAATCAATAAAAATGGATAGGACAGGAGCATCAAACTATGTCCAAGTGCAATCTCACAAATACAGTTCTTGTCATGTAGTGATGTAAATGTAACATGTTCATCTTTACATTTTGATTTATGTTGGAACTTCCTTCATAGAAAAGGTGTGGCTATAGTGGTGACATAGTCAAAACAGTTTGTACTAGCTACTCCGTATCATAGTTACCAACCTGCATTCTAAATTGCTTCTGGAGAGATTGTAAATGTATTTATGTTAATGTCTAC]

[+] EMBL AK061574             [CGCGCCGCCTGAGCCCTCGCGTCGCGACACCGCTCGCCGCGGCGGCGCTGCTCCTCTCCAGCGACCACGCGAGGAGGGAGAAGAGGAGGAAGAAGGCGAGAAGGGAGCAAGCTAGAAGAGTGGGAGAGGGGGACATCTAGGTCGTCGACGGCCTCAATGGGGTGGGGCATACCGACGCGGCCGCCGGCGACGTCGACGCCGTCGCGGGTGCAGGCGCTGTACGAGCTCTGCAAGCGCACCTTCCCGTCGCCGTCCTCCGTCGCCGCGTCCTCCTCGCCGTCGTCTCCACCTCCCGACCACGCCATCGGCGCCATCTCCTCTCTCATGGATACAATCACTCCTGTGGATGTTGGACTCAGAGATGATAATCTTGAGGATGGAAGAGGATTTGGGTTCTTTGAATCAAACTTCTTGAAGAATTCAGCAAGGGTTGCTAGATGGGCGCAACCCATAACCTACCTGCATGTCTACGAGTGTGACGCCTTCTCTATTGGAATATTCTGCTTACCAACATCGGCGGTTATTCCTCTCCATGATCATCCGGGAATGACTGTGTTGAGCAAATTACTCTATGGTTCGATGCATGTCAAATCGTATGATTGGGTAGAGCCTGCTGTTCTAGCAAATGGCAAGCCAGTGAAACTTGGAAAGTTACATACGGATGATGTTCTGAATGCCCCTTGTCCAACTGCTGTTTTGTATCCCCAAAGTGGTGGGAACATGCACTGCTTCACTTCAGTAAAATCATGTGCTGTTCTTGATGTCATTGCCCCACCATACTCTGAATCTTCTGGCCGTGTTTGCACCTATTTTCACGATTATCCATTTTCTAGCTTCT CAGCT GGACAAGCAAAAGTAGTCCATGGGCCAGATAATTATGCTTGGCTTGAGGCCTTAATCGTACCGGTGAATATTAATATGCGCCCTGGCACGTACACTGGCCCAACTATACAGGAACATCTGCCATAATCAATAAAAATGGATAGGACAGGAGCATCAAACTATGTCCAAGTGCAATCTCACAAATACAGTTCTTGTCATGTAGTGATGTAAATGTAACATGTTCATCTTTACATTTTGATTTATGTTGGAACTTCCTTCATAGAAAAGGTGTGGCTATAGTGGTGACATAGTCAAAACAGTTTGTACTAGCTACTCCGTATCATAGTTACCAACCTGCATT                                                ]
[+] EMBL AK099391             [  CGCCGCCTGAGCCCTCGCGTCGCGACACCGCTCGCCGCGGCGGCGCTGCTCCTCTCCAGCGACCACGCGAGGAGGGAGAAGAGGAGGAAGAAGGCGAGAAGGGAGCAAGCTAGAAGAGTGGGAGAGGGGGACATCTAGGTCGTCGACGGCCTCAATGGGGTGGGGCATACCGACGCGGCCGCCGGCGACGTCGACGCCGTCGCGGGTGCAGGCGCTGTACGAGCTCTGCAAGCGCACCTTCCCGTCGCCGTCCTCCGTCGCCGCGTCCTCCTCGCCGTCGTCTCCACCTCCCGACCACGCCATCGGCGCCATCTCCTCTCTCATGGATACAATCACTCCTGTGGATGTTGGACTCAGAGATGATAATCTTGAGGATGGAAGAGGATTTGGGTTCTTTGAATCAAACTTCTTGAAGAATTCAGCAAGGGTTGCTAGATGGGCGCAACCCATAACCTACCTGCATGTCTACGAGTGTGACGCCTTCTCTATTGGAATATTCTGCTTACCAACATCGGCGGTTATTCCTCTCCATGATCATCCGGGAATGACTGTGTTGAGCAAATTACTCTATGGTTCGATGCATGTCAAATCGTATGATTGGGTAGAGCCTGCTGTTCTAGCAAATGGCAAGCCAGTGAAACTTGGAAAGTTACATACGGATGATGTTCTGAATGCCCCTTGTCCAACTGCTGTTTTGTATCCCCAAAGTGGTGGGAACATGCACTGCTTCACTTCAGTAAAATCATGTGCTGTTCTTGATGTCATTGCCCCACCATACTCTGAATCTTCTGGCCGTGTTTGCACCTATTTTCACGATTATCCATTTTCTAGCTTCT CAGCT GGACAAGCAAAAGTAGTCCATGGGCCAGATAATTATGCTTGGCTTGAGGCCTTAATCGTACCGGTGAATATTAATATGCGCCCTGGCACGTACACTGGCCCAACTATACAGGAACATCTGCCATAATCAATAAAAATGGATAGGACAGGAGCATCAAACTATGTCCAAGTGCAATCTCACAAATACAGTTCTTGTCATGTAGTGATGTAAATGTAACATGTTCATCTTTACATTTTGATTTATGTTGGAACTTCCTTCATAGAAAAGGTGTGGCTATAGTGGTGACATAGTCAAAACAGTTTGTACTAGCTACTCCGTATCATAGTTACCAACCTGCATTCTAAATTGCTTCTGGAGAGATTGTAAATGTATTTATGTTAATGTCTAC]
[+] EMBL AU094361             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  cCACNTATTTTCACGATTATCCATTTTCTAGCTTCTCCAGCTGGGACAAGCAAAAGTAGTCCATGGGCCAGATAATTATGCTTGGCTTGAGGCCTTAATCGTACCGGTGAATATTAATATGCGCCCTGGCACGTACACTGGCCCAACTATACAGGAACATCTGCCATAATCAATAAAAATGGATAGGACAGGAGCATCAAACTATGTCCAAGTGCAATCTCACAAATACAGTTCTTGTCATGTAGTGATGTAAATGTAACATGTTCATCTTTACATTTTGATTTATGTTGGAACTTCCTTCATAGAAAAGGTGTGGCTATAGTGGTGACATAGTCAAAACAGTTTGTACTAGCTACTCCGTATCATAGTTACCAACCTGCATTCTAAATTGCTTCTGGAGAGATTGTAAAaa                   ]


>consensus_11122#0 CGCGCCGCCTGAGCCCTCGCGTCGCGACACCGCTCGCCGCGGCGGCGCTGCTCCTCTCCA GCGACCACGCGAGGAGGGAGAAGAGGAGGAAGAAGGCGAGAAGGGAGCAAGCTAGAAGAG TGGGAGAGGGGGACATCTAGGTCGTCGACGGCCTCAATGGGGTGGGGCATACCGACGCGG CCGCCGGCGACGTCGACGCCGTCGCGGGTGCAGGCGCTGTACGAGCTCTGCAAGCGCACC TTCCCGTCGCCGTCCTCCGTCGCCGCGTCCTCCTCGCCGTCGTCTCCACCTCCCGACCAC GCCATCGGCGCCATCTCCTCTCTCATGGATACAATCACTCCTGTGGATGTTGGACTCAGA GATGATAATCTTGAGGATGGAAGAGGATTTGGGTTCTTTGAATCAAACTTCTTGAAGAAT TCAGCAAGGGTTGCTAGATGGGCGCAACCCATAACCTACCTGCATGTCTACGAGTGTGAC GCCTTCTCTATTGGAATATTCTGCTTACCAACATCGGCGGTTATTCCTCTCCATGATCAT CCGGGAATGACTGTGTTGAGCAAATTACTCTATGGTTCGATGCATGTCAAATCGTATGAT TGGGTAGAGCCTGCTGTTCTAGCAAATGGCAAGCCAGTGAAACTTGGAAAGTTACATACG GATGATGTTCTGAATGCCCCTTGTCCAACTGCTGTTTTGTATCCCCAAAGTGGTGGGAAC ATGCACTGCTTCACTTCAGTAAAATCATGTGCTGTTCTTGATGTCATTGCCCCACCATAC TCTGAATCTTCTGGCCGTGTTTGCACCTATTTTCACGATTATCCATTTTCTAGCTTCTCA GCTGGACAAGCAAAAGTAGTCCATGGGCCAGATAATTATGCTTGGCTTGAGGCCTTAATC GTACCGGTGAATATTAATATGCGCCCTGGCACGTACACTGGCCCAACTATACAGGAACAT CTGCCATAATCAATAAAAATGGATAGGACAGGAGCATCAAACTATGTCCAAGTGCAATCT CACAAATACAGTTCTTGTCATGTAGTGATGTAAATGTAACATGTTCATCTTTACATTTTG ATTTATGTTGGAACTTCCTTCATAGAAAAGGTGTGGCTATAGTGGTGACATAGTCAAAAC AGTTTGTACTAGCTACTCCGTATCATAGTTACCAACCTGCATTCTAAATTGCTTCTGGAG AGATTGTAAATGTATTTATGTTAATGTCTAC



consensusID : consensus_11122#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 801
fasta sequence
                              [CGCGCGCGACGTGCTTCCAGTTCGAAGCGCCGGTGAGGCGGCCGGCGGTCGGCAAGGGGACGCGACGCGCGGCGGCGGCGCGCCGGCACTGCAGCAGCCAGCAGCAGCTAGGGCACGCGGCTCACCGGCCGCTGGCTGCTGGGGCCTGGGGGCGCCGGGCGGCAGCAAGGCAGCCAGGCAGGGCGCGGCGCGCGGGCGGGCTGGCGGGGGGACGCGGCGGCGCGCCGGCACAGCAGCAGCCAGGCAACTGAGGCAAGGCAACAAGGCAAGTAGCGCCGGGCAGCAACAAGGCAGGCGGCAAGCCGGACGGCACCAACCACCAAGGCAGCAAGGCAAGCAGCAGCAAGCGTCAAGGGGCAAGGCAACAACTCAACAATTGAGGATTTGAACAAGTGAGGTATATAAAATTTCTGATTTGTCATTTAAAATCAATTTCAATTGTCATGGCTAGTTGTTATTGATAGTTCAAGTCTTCAAAAAATCATAGATTTTGATTCCTAGTTTGCTACTTTGTTATATTGCTAGATTGCGAAGATGTCAAAAAGAACACTGCTCACATGTTATTTGACATTTCTTTTGTATAGGTTACCCTGATGAAGAATAATTGGTGATAGGGTGTACTAGTGTCGCACATCATGTCATTATCTATTGGATATTTCAATATTGTTTTGGTATGGATAATGCTTATTTCTTGTTAATTCTATATATTTACACTTTGTATTAGACATATAGTCAATTTACATAAGACATGTCTCAACTTTTCTCGGCCACTTTTAGTTCAGCCCCCACTATAATGTAATC]

[+] EMBL CB673231             [CGCGCGCGACGTGCTTCCAGTTCGAAGCGCCGGTGAGGCGGCCGGCGGTCGGCAAGGGGACGCGACGCGCGGCGGCGGCGCGCCGGCACTGCAGCAGCCAGCAGCAGCTAGGGCACGCGGCTCACCGGCCGCTGGCTGCTGGGGCCTGGGGGCGCCGGGCGGCAGCAAGGCAGCCAGGCAGGGCGCGGCGCGCGGGCGGGCTGGCGGGGGGACGCGGCGGCGCGCCGGCACAGCAGCAGCCAGGCAACTGAGGCAAGGCAACAAGGCAAGTAGCGCCGGGCAGCAACAAGGCAGGCGGCAAGCCGGACGGCACCAACCACCAAGGCAGCAAGGCAAGCAGCAGCAAGCGTCAAGGGGCAAGGCAACAACTCAACAATTGAGGATTTGAACAAGTGAGGTATATAAAATTTCTGATTTGTCATTTAAAATCAATTTCAATTGTCATGGCTAGTTGTTATTGATAGTTCAAGTCTTCAAAAAATCATAGATTTTGATTCCTAGTTTGCTACTTTGTTATATTGCTAGATTGCGAAGATGTCAAAAAGAACACTGCTCACATGTTATTTGACATTTCTTTTGTATAGGTTACCCTGATGAAGAATAATTGGTGATAGGGTGTACTAGTGTCGCACATCATGTCATTATCTATTGGATATTTCAATATTGTTTTGGTATGGATAATGCTTATTTCTTGTTAATTCTATATATTTACACTTTGTATTAGACATATAGTCAATTTACATAAGACATGTCTCAACTTTTCTCGGCCACTTTTAGTTCAGCCCCCACTATAATGTAATC]


>consensus_11122#1 CGCGCGCGACGTGCTTCCAGTTCGAAGCGCCGGTGAGGCGGCCGGCGGTCGGCAAGGGGA CGCGACGCGCGGCGGCGGCGCGCCGGCACTGCAGCAGCCAGCAGCAGCTAGGGCACGCGG CTCACCGGCCGCTGGCTGCTGGGGCCTGGGGGCGCCGGGCGGCAGCAAGGCAGCCAGGCA GGGCGCGGCGCGCGGGCGGGCTGGCGGGGGGACGCGGCGGCGCGCCGGCACAGCAGCAGC CAGGCAACTGAGGCAAGGCAACAAGGCAAGTAGCGCCGGGCAGCAACAAGGCAGGCGGCA AGCCGGACGGCACCAACCACCAAGGCAGCAAGGCAAGCAGCAGCAAGCGTCAAGGGGCAA GGCAACAACTCAACAATTGAGGATTTGAACAAGTGAGGTATATAAAATTTCTGATTTGTC ATTTAAAATCAATTTCAATTGTCATGGCTAGTTGTTATTGATAGTTCAAGTCTTCAAAAA ATCATAGATTTTGATTCCTAGTTTGCTACTTTGTTATATTGCTAGATTGCGAAGATGTCA AAAAGAACACTGCTCACATGTTATTTGACATTTCTTTTGTATAGGTTACCCTGATGAAGA ATAATTGGTGATAGGGTGTACTAGTGTCGCACATCATGTCATTATCTATTGGATATTTCA ATATTGTTTTGGTATGGATAATGCTTATTTCTTGTTAATTCTATATATTTACACTTTGTA TTAGACATATAGTCAATTTACATAAGACATGTCTCAACTTTTCTCGGCCACTTTTAGTTC AGCCCCCACTATAATGTAATC



consensusID : consensus_11122#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence
                              [TCATGATTATCCATTTTCTAGCTTCTGTAAGTGAAATCCCTCACTGTCGTCATATTACATATTTCTGTCAGGTTCATGTTTAACTAAATCTTTTGGCGGAAGCAGAATACCAGCCATCTCTGGTATTGGCTGGTAGTTGTTCAAAACATATATTATTAGTCACAATGCTGTTCAGATCTTTTCTGTCAAGAACAGCAATTACCTTATACATTATGTTCATTTTATATGAGAAGAAAACTTAATTTGTTGATATATTGTCAAAACACAAAAGTGATCATTTTCACTATGCTATATCATGTTTGATTTTTCTCACGGATCACTCCAACTGCAGCAGCTGGACAAGCAAAAGTAGTCCATGGGCCAGATAATTATGCTTGGCTTGAGGCCTTAAACGTACCGGTGAATATTAATATGCGCCCTGGCATGTATACTGGCCCAACTATACAGGAACATCTGCCATAATCAATAAAAATGGGCAGGACAGAGCGTCAAACTGTGTCCAAGTGCCATCTCACAAATACAGTTCTTATCATGTAGTGATGTAAATGTAACATGTTCATCTTTAACTTTTGATTTATGTTGTCCTTCATTGAAAAGGTGTGGCTATAATGGTGACATAGTCAAAACAGTTTGTACTAGCCACTTTGTATCTTAGTTACCAATCTGCAAATTCTGCATTCTAAAAGGGTTCTGGAGATATTG]

[-] EMBL CB673232             [TCATGATTATCCATTTTCTAGCTTCTGTAAGTGAAATCCCTCACTGTCGTCATATTACATATTTCTGTCAGGTTCATGTTTAACTAAATCTTTTGGCGGAAGCAGAATACCAGCCATCTCTGGTATTGGCTGGTAGTTGTTCAAAACATATATTATTAGTCACAATGCTGTTCAGATCTTTTCTGTCAAGAACAGCAATTACCTTATACATTATGTTCATTTTATATGAGAAGAAAACTTAATTTGTTGATATATTGTCAAAACACAAAAGTGATCATTTTCACTATGCTATATCATGTTTGATTTTTCTCACGGATCACTCCAACTGCAGCAGCTGGACAAGCAAAAGTAGTCCATGGGCCAGATAATTATGCTTGGCTTGAGGCCTTAAACGTACCGGTGAATATTAATATGCGCCCTGGCATGTATACTGGCCCAACTATACAGGAACATCTGCCATAATCAATAAAAATGGGCAGGACAGAGCGTCAAACTGTGTCCAAGTGCCATCTCACAAATACAGTTCTTATCATGTAGTGATGTAAATGTAACATGTTCATCTTTAACTTTTGATTTATGTTGTCCTTCATTGAAAAGGTGTGGCTATAATGGTGACATAGTCAAAACAGTTTGTACTAGCCACTTTGTATCTTAGTTACCAATCTGCAAATTCTGCATTCTAAAAGGGTTCTGGAGATATTG]


>consensus_11122#2 TCATGATTATCCATTTTCTAGCTTCTGTAAGTGAAATCCCTCACTGTCGTCATATTACAT ATTTCTGTCAGGTTCATGTTTAACTAAATCTTTTGGCGGAAGCAGAATACCAGCCATCTC TGGTATTGGCTGGTAGTTGTTCAAAACATATATTATTAGTCACAATGCTGTTCAGATCTT TTCTGTCAAGAACAGCAATTACCTTATACATTATGTTCATTTTATATGAGAAGAAAACTT AATTTGTTGATATATTGTCAAAACACAAAAGTGATCATTTTCACTATGCTATATCATGTT TGATTTTTCTCACGGATCACTCCAACTGCAGCAGCTGGACAAGCAAAAGTAGTCCATGGG CCAGATAATTATGCTTGGCTTGAGGCCTTAAACGTACCGGTGAATATTAATATGCGCCCT GGCATGTATACTGGCCCAACTATACAGGAACATCTGCCATAATCAATAAAAATGGGCAGG ACAGAGCGTCAAACTGTGTCCAAGTGCCATCTCACAAATACAGTTCTTATCATGTAGTGA TGTAAATGTAACATGTTCATCTTTAACTTTTGATTTATGTTGTCCTTCATTGAAAAGGTG TGGCTATAATGGTGACATAGTCAAAACAGTTTGTACTAGCCACTTTGTATCTTAGTTACC AATCTGCAAATTCTGCATTCTAAAAGGGTTCTGGAGATATTG



consensusID : consensus_11122#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence
                              [TGCTTGGCTTGAGGCCTTAATCGGACCGGTGAATATTAATATGCGCCCTGGCACGTACACTGGCCCCAACTATACAGGAACATCTGCCATAATCAATAAAAATGGATAGGACAGGAGCATCAAACTATGTCCAAGTGCAATCTCACAAATACAGTTCTTGTCATGTAGTGATGTAAATGTAACATGTTCATCTTTACATTTTGATTTATGTTGGAACTTCCTTCATAGAAAAGGTGTGGCTATAGTGGTGACATAGTCAAAACAGTTTGTACTAGCTCTCCGTATCATAGTTACCAACCTGCATTCTAAATTGCTTCTGGAGAGATTGTAAAAAAAAANAAANANACCACCGTNCNCNGCCACCGNT]

[-] EMBL OSC177               [TGCTTGGCTTGAGGCCTTAATCGGACCGGTGAATATTAATATGCGCCCTGGCACGTACACTGGCCCCAACTATACAGGAACATCTGCCATAATCAATAAAAATGGATAGGACAGGAGCATCAAACTATGTCCAAGTGCAATCTCACAAATACAGTTCTTGTCATGTAGTGATGTAAATGTAACATGTTCATCTTTACATTTTGATTTATGTTGGAACTTCCTTCATAGAAAAGGTGTGGCTATAGTGGTGACATAGTCAAAACAGTTTGTACTAGCTCTCCGTATCATAGTTACCAACCTGCATTCTAAATTGCTTCTGGAGAGATTGTAAAAAAAAANAAANANACCACCGTNCNCNGCCACCGNT]


>consensus_11122#3 TGCTTGGCTTGAGGCCTTAATCGGACCGGTGAATATTAATATGCGCCCTGGCACGTACAC TGGCCCCAACTATACAGGAACATCTGCCATAATCAATAAAAATGGATAGGACAGGAGCAT CAAACTATGTCCAAGTGCAATCTCACAAATACAGTTCTTGTCATGTAGTGATGTAAATGT AACATGTTCATCTTTACATTTTGATTTATGTTGGAACTTCCTTCATAGAAAAGGTGTGGC TATAGTGGTGACATAGTCAAAACAGTTTGTACTAGCTCTCCGTATCATAGTTACCAACCT GCATTCTAAATTGCTTCTGGAGAGATTGTAAAAAAAAANAAANANACCACCGTNCNCNGC CACCGNT



consensusID : consensus_11122#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 188
fasta sequence
                              [TTTTTTTGACATCAAGAACAGCACAAGATTTTACTGAAGTGAAGCAGTGCATGTTCCCACCACTTTGGGGATACAAAACAGCCAGTGGCAGAGCCAGGATTACATTATAGTGGGGGCTGAACTAAAAGTGGCCGAGAAAAGTTGAGACATGTCTTATGTAAATTTCTACTCCGTCAGTCCATGTCAGT]

[+] EMBL CF331609             [TTTTTTTGACATCAAGAACAGCACAAGATTTTACTGAAGTGAAGCAGTGCATGTTCCCACCACTTTGGGGATACAAAACAGCCAGTGGCAGAGCCAGGATTACATTATAGTGGGGGCTGAACTAAAAGTGGCCGAGAAAAGTTGAGACATGTCTTATGTAAATTTCTACTCCGTCAGTCCAT      ]
[-] EMBL CF331610             [ TTTTTTGACATCAAGAACAGCACAAGATTTTACTGAAGTGAAGCAGTGCATGTTCCCACCACTTTGGGGATACAAAACAGCCAGTGGCAGAGCCAGGATTACATTATAGTGGGGGCTGAACTAAAAGTGGCCGAGAAAAGTTGAGACATGTCTTAT AAAATTTCTACTCCGTCAGTCCATGTCAGT]


>consensus_11122#4 TTTTTTTGACATCAAGAACAGCACAAGATTTTACTGAAGTGAAGCAGTGCATGTTCCCAC CACTTTGGGGATACAAAACAGCCAGTGGCAGAGCCAGGATTACATTATAGTGGGGGCTGA ACTAAAAGTGGCCGAGAAAAGTTGAGACATGTCTTATGTAAATTTCTACTCCGTCAGTCC ATGTCAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11122#0      CGCGCCGCCTGAGCCCTCGCGTCGCGACACCGCTCGCCGCGGCGGCGCTGCTCCTCTCCA 60
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      ------------------------------------------------------------
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      ------------------------------------------------------------
                                                                                   

consensus_11122#0      GCGACCACGCGAGGAGGGAGAAGAGGAGGAAGAAGGCGAGAAGGGAGCAAGCTAGAAGAG 120
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      ------------------------------------------------------------
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      ------------------------------------------------------------
                                                                                   

consensus_11122#0      TGGGAGAGGGGGACATCTAGGTCGTCGACGGCCTCAATGGGGTGGGGCATACCGACGCGG 180
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      ------------------------------------------------------------
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      ------------------------------------------------------------
                                                                                   

consensus_11122#0      CCGCCGGCGACGTCGACGCCGTCGCGGGTGCAGGCGCTGTACGAGCTCTGCAAGCGCACC 240
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      ------------------------------------------------------------
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      ------------------------------------------------------------
                                                                                   

consensus_11122#0      TTCCCGTCGCCGTCCTCCGTCGCCGCGTCCTCCTCGCCGTCGTCTCCACCTCCCGACCAC 300
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      ------------------------------------------------------------
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      ------------------------------------------------------------
                                                                                   

consensus_11122#0      GCCATCGGCGCCATCTCCTCTCTCATGGATACAATCACTCCTGTGGATGTTGGACTCAGA 360
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      ------------------------------------------------------------
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      ------------------------------------------------------------
                                                                                   

consensus_11122#0      GATGATAATCTTGAGGATGGAAGAGGATTTGGGTTCTTTGAATCAAACTTCTTGAAGAAT 420
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      ------------------------------------------------------------
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      ------------------------------------------------------------
                                                                                   

consensus_11122#0      TCAGCAAGGGTTGCTAGATGGGCGCAACCCATAACCTACCTGCATGTCTACGAGTGTGAC 480
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      ------------------------------------------------------------
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      ------------------------------------------------------------
                                                                                   

consensus_11122#0      GCCTTCTCTATTGGAATATTCTGCTTACCAACATCGGCGGTTATTCCTCTCCATGATCAT 540
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      ----------TCATGATTATCCATTTTCTAGCTTCTGTAAGTGAAATCCCTCACTGTCGT 50
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      ----CGCGCGCGACGTGCTTCCAGTTCGAAGCGCCGGTGAGGCGGCCGGCGGTCGGCAAG 56
                                                                                   

consensus_11122#0      CCGGGAATGACTGTGTTGAGCAAATTACTCTAT---GGTTCGATGCATGTCAAATCGTAT 597
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      C--ATATTACATATTTCTGTCAGGTT----CAT---GTTTAACTAAATCTTTTGGCGGAA 101
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      GGGACGCGACGCGCGGCGGCGGCGCGCCGGCACTGCAGCAGCCAGCAGCAGCTAGGGCAC 116
                                                                                   

consensus_11122#0      GATTGGGTAGAGCCTGCTGTTCTAGCAAATGGCAAGCCAGTGAAACTTGGAAAGTTACAT 657
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      GCAGAATACCAGCCATCTCTGGTATTGGCTGGTAGTTGTTCAAAACATATATTATTAGTC 161
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      GCGGCTCACCGGCCGCTGGCTGCTGGGGCCTGGGGGCGCCGGGCGGCAGCAAGGCAGCCA 176
                                                                                   

consensus_11122#0      ACGGATGATGTTCTGAATGCCCCTTGTCCAACTGCTGTTTTGTATCCCCAAAGTGGTGGG 717
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      ACA-ATGCTGTTCAGATCTTTTCTGTCAAGAACAGCAATTACCTTATACATTATGTTCAT 220
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      GGCAGGGCGCGGCGCGCGGGCGGGCTGGCGGGGGGACGCGGCGGCGCGCCGGCACAGCAG 236
                                                                                   

consensus_11122#0      AACATGCACTGCTTCACTTCAGTAAAATCATGTGCTGTTCTTGATGTCATTGCCCCACCA 777
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      TTTATATGAGAAGAAAACTTAATTTGTTGATATATTGT-CAAAACACAAAAGTG--ATCA 277
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      CAGCCAGGCAACTGAGGCAAGGCAACAAGGCAAGTAGCGCCGGGCAGCAACAAGGCAGGC 296
                                                                                   

consensus_11122#0      TACTCTGAATCTTCTGGCCGTGTTTGCACCTATTTTCACGATTATCCATTTTCTAGCTTC 837
consensus_11122#3      ------------------------------------------------------------
consensus_11122#2      TTTTCACTATGCTATA-TCATGTTTG-ATTTTTCTCACGGATCACTCCAACTGCAGC--- 332
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      GGCAAGCCGGACGGCACCAACCACCAAGGCAGCAAGGCAAGCAGCAGCAAGCGTCAAGGG 356
                                                                                   

consensus_11122#0      TCAGCTGGACAAGCAAAAGTAGTCCATGGGCCAGATAATTATGCTTGGCTTGAGGCCTTA 897
consensus_11122#3      -----------------------------------------TGCTTGGCTTGAGGCCTTA 19
consensus_11122#2      --AGCTGGACAAGCAAAAGTAGTCCATGGGCCAGATAATTATGCTTGGCTTGAGGCCTTA 390
consensus_11122#4      --------------------------------------------TTTTTTTGACATCAAG 16
consensus_11122#1      GCAAGGCAACAACTCAA--CAATTGAGGATTTGAACAAGTGAGGTATATAAAATTTCTGA 414
                                                                   *       *   *   

consensus_11122#0      ATC-GTACCGGTGAATATTAATATGCGCCCTGGCACGTACACTGGCCC-AACTATACAGG 955
consensus_11122#3      ATC-GGACCGGTGAATATTAATATGCGCCCTGGCACGTACACTGGCCCCAACTATACAGG 78
consensus_11122#2      AAC-GTACCGGTGAATATTAATATGCGCCCTGGCATGTATACTGGCCC-AACTATACAGG 448
consensus_11122#4      AACAGCACAAGATTTTACTGAAGTGAAGCAGTGCATGT-------TCCCACCACTTTGGG 69
consensus_11122#1      TTTGTCATTTAAAATCAATTTCAATTGTCATGGCTAGT----TGTTATTGATAGTTCAAG 470
                             *         * *         *   **  **                *    *

consensus_11122#0      AACATCTGCCATAATCAATAAAAATGGATAGGACAGGAGCATCAAACTATGTCCAAGTGC 1015
consensus_11122#3      AACATCTGCCATAATCAATAAAAATGGATAGGACAGGAGCATCAAACTATGTCCAAGTGC 138
consensus_11122#2      AACATCTGCCATAATCAATAAAAATGGGCAGGACAG-AGCGTCAAACTGTGTCCAAGTGC 507
consensus_11122#4      GATACAAA--ACAGCCAGTGGCAG-AGCCAGGATTACATTAT--AGTGGGGGCTGAACTA 124
consensus_11122#1      TCTTCAAAAAATCATAGATTTTGATTCCTAGTTTGCTACTTTGTTATATTGCTAGATTGC 530
                                 *       *          **      *   *        *    *    

consensus_11122#0      AATC-TCACAAATACAGTTCTTGTCATGTAGTGATGTAAATGTAACATGTTCATCTTTAC 1074
consensus_11122#3      AATC-TCACAAATACAGTTCTTGTCATGTAGTGATGTAAATGTAACATGTTCATCTTTAC 197
consensus_11122#2      CATC-TCACAAATACAGTTCTTATCATGTAGTGATGTAAATGTAACATGTTCATCTTTAA 566
consensus_11122#4      AAAG-TGGCCGAGAAAAGTTGAGACATGTCTT-ATGTAAATTT--CTACTCCGTCAGTCC 180
consensus_11122#1      GAAGATGTCAAAAAGAACACTGCTCACATGTTATTTGACATTTCTTTTGTATAGGTTACC 590
                        *   *  *  * * *        **  *  *  *  * ** *      *          

consensus_11122#0      ATTTTGATTTATGTTGGAACTTCCTTCATAGAAAAGGTGTGGCTATAGTGGTGACATAGT 1134
consensus_11122#3      ATTTTGATTTATGTTGGAACTTCCTTCATAGAAAAGGTGTGGCTATAGTGGTGACATAGT 257
consensus_11122#2      CTTTTGATTTATGTTG-----TCCTTCATTGAAAAGGTGTGGCTATAATGGTGACATAGT 621
consensus_11122#4      ATGTCAGT---------------------------------------------------- 188
consensus_11122#1      CTGATGAAGAATAATTGGTGATAGGGTGTACTAGTGTCGCACATCATGTCATTATCTATT 650
                        *                                                          

consensus_11122#0      CAAAACAGTTTGTACTAGCTACTCCGTATCATAGTTACCAACCTGCATTCTAAATTGC-T 1193
consensus_11122#3      CAAAACAGTTTGTACTAGCT-CTCCGTATCATAGTTACCAACCTGCATTCTAAATTGC-T 315
consensus_11122#2      CAAAACAGTTTGTACTAGCCACTTTGTATCTTAGTTACCAATCTGCAAATT---CTGCAT 678
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      GGATATTTCAATATTGTTTTGGTATGGATAATGCTTATTTCTTGTTAATTCTATATATTT 710
                                                                                   

consensus_11122#0      TCTGGAGAGATTGTAAATG----TATTTATGTTAATGTCTAC------------------ 1231
consensus_11122#3      TCTGGAGAGATTGTAAAAAAAAANAAANANACCACCGTNCNCNGCCACCGNT-------- 367
consensus_11122#2      TCTAAAAGGGTTCTGGAGA----TATTG-------------------------------- 702
consensus_11122#4      ------------------------------------------------------------
consensus_11122#1      ACACTTTGTATTAGACATATAGTCAATTTACATAAGACATGTCTCAACTTTTCTCGGCCA 770
                                                                                   

consensus_11122#0      -------------------------------
consensus_11122#3      -------------------------------
consensus_11122#2      -------------------------------
consensus_11122#4      -------------------------------
consensus_11122#1      CTTTTAGTTCAGCCCCCACTATAATGTAATC 801
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)