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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1247 fasta sequence
[TCCTTTTTTTTTAAACGCAAACGCCATCGATTTTATAAACTTGATCTGATATGAAATCAGTGATCAAAGTTTCAAAAGTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGACTACATGTTTGTGCGTGATCGGACCAAATCCACACTCCTTCGTTCATTTGCAACGAATCAGTCATCAAAACGCTAAATAAACAGGCCTCGTGTCGTGTCACACGCCGCCGGTCTTTTCTCCGCCGCCGTCGCCGTCGCCGCCGTGGTGGTGGCGGCGCTTGGCCCAAAACCTGAGGCGGAGCTCCCTTCCCTCGAGCATCTTCTCCACCTCCTCGATGGGGAGGCCCTTGGTCTCCGGCACGCAGACGAGCACGAACGCGAGTGCCGCCACGGACAGCCCGCCGAAGATGAGGAACGTCCACGCCGCCCCGATGGCGTCCGTCAGCGACAGGAACGACTGCGCCACCGCCAGGTTCGACACCCAGTTCGCCGTCGCCGCCGCGCCGCCGCACACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCATCCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCTGCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGCACGCGTCGCGAGCCGTGGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGCCGCCCGCCGCGCAGAACCCACACCCCGCCGACGCCGCCGCTGCCTTGAGACACCTCGTGCAGTCCCAGAACGACGACGACGAGCGGGAGGAGTAGTCCGGGCATGTGAGCGCGCCGCCGTGGAAGTGGGCGGTCTCGGCGGCGCCGACGGGCGGGGAGTGGGAGGTGGCCTCGTGGAACACGGCGGAGAGGAGGGCGAGGGAGAGGATGACGCCGGCGAGGCTGATGACGAGCAGCTTGCGCCGCCCGGTGCGGTCGATGAAGTAGATGCTGACGAGGGAGCCGGCGGCGTTGAGGCCGGCGGTGACGAGGGACAGCGCGAGCGCCGTCTGGTTGGAGGCGAACCCGGCGAGCTGCACGATGGTGGGGCTGTAGTACATCACCGTGTTGATCCCCACCAGCTGCTGGAACACCTGCAGCCCGACGCCGGCGACCAGCCCCCGCCGCACCGTCGCCGTCGTCATCAGCAGCGCCACCAGGCTCGTCTTCTCCGACGAGCT]
[+] EMBL CB671547 [TCCTTTTTTTTTAAACGCAAACGCCATCGATTTTATAAACTTCATCTGATATGAAATCAGTGATCAAAGTTTCAAAAGTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGACTACATGTTTGTGCGTGATCGGACCAAATCCACACTCCTTCGTTCATTTGCAACGAATCAGTCATCAAAACGCTAAATAAACAGGCCTCGTGTCGTGTCACACGCCGCCGGTCTTTTCTCCGCCGCCGTCGCCGTCGCCGCCGTGGTGGTGGCGGCGCTTGGCCCAAAACCTGAGGCGGAGCTCCCTTCCCTCGAGCATCTTCTCCACCTCCTCGATGGGGAGGCCCTTGGTCTCCGGCACGCAGACGAGCACGAACGCGAGTGCCGCCACGGACAGCCCGCCGAAGATGAGGAACGTCCACGCCGCCCCGATGGCGTCCGTCAGCGACAGGAACGACTGCGCCACCGCCAGGTTCGACACCCAGTTCGCCGTCGCCGCCGCGCCGCCGCACACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCATCCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCTGCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGCACGCGTCGCGAGCCGTGGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGC ]
[+] EMBL CB668636 [ ACGCAAACGCCATCGATTTTATAAACTTGATCTGATATGAAATCAGTGATCAAAGTTTCAAAAGTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGACTACATGTTTGTGCGTGATCGGACCAAATCCACACTCCTTCGTTCATTTGCAACGAATCAGTCATCAAAACGCTAAATAAACAGGCCTCGTGTCGTGTCACACGCCGCCGGTCTTTTCTCCGCCGCCGTCGCCGTCGCCGCCGTGGTGGTGGCGGCGCTTGGCCCAAAACCTGAGGCGGAGCTCCCTTCCCTCGAGCATCTTCTCCACCTCCTCGATGGGGAGGCCCTTGGTCTCCGGCACGCAGACGAGCACGAACGCGAGTGCCGCCACGGACAGCCCGCCGAAGATGAGGAACGTCCACGCCGCCCCGATGGCGTCCGTCAGCGACAGGAACGACTGCGCCACCGCCAGGTTCGACACCCAGTTCGCCGTCGCCGCCGCGCCGCCGCACACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCATCCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCTGCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGCACGCGTCGCGAGCCGTGGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGCCGCCCGCCGCGCAGAACCCACACCCCGCCG ]
[+] EMBL CB661106 [ CAAACGCCATCGATTTTATAAACTTGATCTGATATGAAATCAGTGATCAAAGTTTCAAAAGTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGACTACATGTTTGTGCGTGATCGGACCAAATCCACACTCCTTCGTTCATTTGCAACGAATCAGTCATCAAAACGCTAAATAAACAGGCCTCGTGTCGTGTCACACGCCGCCGGTCTTTTCTCCGCCGCCGTCGCCGTCGCCGCCGTGGTGGTGGCGGCGCTTGGCCCAAAACCTGAGGCGGAGCTCCCTTCCCTCGAGCATCTTCTCCACCTCCTCGATGGGGAGGCCCTTGGTCTCCGGCACGCAGACGAGCACGAACGCGAGTGCCGCCACGGACAGCCCGCCGAAGATGAGGAACGTCCACGCCGCCCCGATGGCGTCCGTCAGCGACAGGAACGACTGCGCCACCGCCAGGTTCGACACCCAGTTCGCCGTCGCCGCCGCGCCGCCGCACACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCATCCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCTGCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGNACGCGTCGCGAGCCGTGGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGC ]
[-] EMBL CB671546 [ CCGCCGCACACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCATCCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCTGCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGCACGCGTCGCGAGCCGTGGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGCCGCCCGCCGCGCAGAACCCACACCCCGCCGACGCCGCCGCTGCCTTGAGACACCTCGTGCAGTCCCAGAACGACGACGACGAGCGGGAGGAGTAGTCCGGGCATGTGAGCGCGCCGCCGTGGAAGTGGGCGGTCTCGGCGGCGCCGACGGGCGGGGAGTGGGAGGTGGCCTCGTGGAACACGGCGGAGAGGAGGGCGAGGGAGAGGATGACGCCGGCGAGGCTGATGACGAGCAGCTTGCGCCGCCCGGTGCGGTCGATGAAGTAGATGCTGACGAGGGAGCCGGCGGCGTTGAGGCCGGCGGTGACGAGGGACAGCGCGAGCGCCGTCTGGTTGGAGGCGAACCCGGCGAGCTGCACGATGGTGGGGCTGTAGTACATCACCGTGTTGATCCCCACCAGCTGCTGGAACACCTGCAGCCCGACGCCGGCGACCAGCCCCCGCCGCACCGTCGCCGTCGTCATCAGCAGCGCCACCAGGCTCGTCTTCTCCGACGAGCT]
consensusID : consensus_11124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[TTTTTTCATAAACTTGATGTGATATGAAATCCTTGATCAAAGTTTTAAAAGTTTAGGTAAAATTTACCTTAAACTTCAATATTTATGACTAGAAGGGACTACATGTTTGTGCATGAAAGGACCAAATAATCCACAATCCTTCCTTCGTTTGCAACAAATCAGTCATCCCAAAAAGCTTGTAGTACTAAATAAACTGGCGTCGTACGTGTCGTGTCACACGCCGCCGGTCTTTTCGCCGCCGTCGTCGCCGTGGTGGTGGCGGCGCTTGGCCCAGAACCTGAGGCGGAGCTCCCTCTTGTCGAGCATCTTCTCCACCTCCTCGCATGGGGAGGCCTTGGTCTCCGGCACGCAGATGAGCACGAACGCGAGCGCCGCCAGGACAGCCGCCGAAGATGAGGAACGTCCACGCCGCCCGATGGCCTCCGTCAGCGA]
[-] EMBL BI813423 [TTTTTTCATAAACTTGATGTGATATGAAATCCTTGATCAAAGTTTTAAAAGTTTAGGTAAAATTTACCTTAAACTTCAATATTTATGACTAGAAGGGACTACATGTTTGTGCATGAAAGGACCAAATAATCCACAATCCTTCCTTCGTTTGCAACAAATCAGTCATCCCAAAAAGCTTGTAGTACTAAATAAACTGGCGTCGTACGTGTCGTGTCACACGCCGCCGGTCTTTTCGCCGCCGTCGTCGCCGTGGTGGTGGCGGCGCTTGGCCCAGAACCTGAGGCGGAGCTCCCTCTTGTCGAGCATCTTCTCCACCTCCTCGCATGGGGAGGCCTTGGTCTCCGGCACGCAGATGAGCACGAACGCGAGCGCCGCCAGGACAGCCGCCGAAGATGAGGAACGTCCACGCCGCCCGATGGCCTCCGTCAGCGA]
consensusID : consensus_11124#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence
[GGCGGCGTGTCGACACTGACACAGTACGACGTCCAGTATCTATTGTAGTACGTACAAGACTATCTCTTGGGATAGCCTGATTTGTATGCCATACGCAAGGAAGGTATTGTGGATTATTTGGTCCTTTCATCGCACAAACAGTGTAGTCCCTTCT]
[+] EMBL BI809227 [GGCGGCGTGTCGACACTGACACAGTACGACGTCCAGTATCTATTGTAGTACGTACAAGACTATCTCTTGGGATAGCCTGATTTGTATGCCATACGCAAGGAAGGTATTGTGGATTATTTGGTCCTTTCATCGCACAAACAGTGTAGTCCCTTCT]
consensusID : consensus_11124#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 132 fasta sequence
[TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGGCTACATGTTTGTGCGTGATCGGACAAAATCCATACTCCTTTAATCCAT]
[-] EMBL CF322168 [TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCTAAATTTTACCTTAATAAACTTAAATATTTATGGCTACATGTTTGTGCGTGATCGGACAAAATCCATACTC ]
[+] EMBL CF322167 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTAAATTTTACCTTAATAAACTTAAATTTTTATGACTACATGTTTGGGCGTGATCGGACCAAATCCATACTCCTTTAATCCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11124#0 TCCTTTTTTTTTAAACGCAAACGCCATCGATTTTATAAACTTGATCTGATATGAAATCAG 60
consensus_11124#1 ---------------------------TTTTTTCATAAACTTGATGTGATATGAAATCCT 33
consensus_11124#3 ----------------------------TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 32
consensus_11124#2 -------------------------GGCGGCGTGTCGACACTGACACAGTACGACGTCCA 35
* * * *
consensus_11124#0 TGATCAAAGTTTCAAAAGTTTATCTAA-ATTTTACCTTAATAAACTTAAATATTTATGAC 119
consensus_11124#1 TGATCAAAGTTTTAAAAGTTTAGGTAA-AATTTACCTTA---AACTTCAATATTTATGAC 89
consensus_11124#3 TTTTTTTTTTTT------TTTATCTAA-ATTTTACCTTAATAAACTTAAATATTTATGGC 85
consensus_11124#2 GTATCTATTGTA-----GTACGTACAAGACTATCTCTTGGGATAGCCTGATTTGTATGCC 90
* * * ** * * * *** * ** * **** *
consensus_11124#0 TA----------CATGTTTGTGCGTGATCGGACCAAAT---CCACACTCCTT-CGTTCAT 165
consensus_11124#1 TAGAAGGGACTACATGTTTGTGCATGAAAGGACCAAATAATCCACAATCCTT-CCTTCGT 148
consensus_11124#3 TA----------CATGTTTGTGCGTGATCGGACAAAAT---CCATACTCCTT-TAATCCA 131
consensus_11124#2 ATACGCAAGGAAGGTATTGTGGATTATTTGGTCCTTTCATCGCACAAACAGTGTAGTCCC 150
* ** * * ** * ** * * * **
consensus_11124#0 TTGCAACGAATCAGTCATC--AAAACGCT---------AAATAAACAGGCCTCGT----G 210
consensus_11124#1 TTGCAACAAATCAGTCATCCCAAAAAGCTTGTAGTACTAAATAAACTGGCGTCGTACGTG 208
consensus_11124#3 T----------------------------------------------------------- 132
consensus_11124#2 TTCT-------------------------------------------------------- 154
*
consensus_11124#0 TCGTGTCACACGCCGCCGGTCTTTTCTCCGCCGCCGTCGCCGTCGCCGCCGTGGTGGTGG 270
consensus_11124#1 TCGTGTCACACGCCGCCGGTCTTTTC---------GCCGCCGTCGTCGCCGTGGTGGTGG 259
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 CGGCGCTTGGCCCAAAACCTGAGGCGGAGCTCCCTTCCCTCGAGCATCTTCTCCACCTCC 330
consensus_11124#1 CGGCGCTTGGCCCAGAACCTGAGGCGGAGCTCCCTCTTGTCGAGCATCTTCTCCACCTCC 319
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 TCG-ATGGGGAGGCCCTTGGTCTCCGGCACGCAGACGAGCACGAACGCGAGTGCCGCCAC 389
consensus_11124#1 TCGCATGGGGAGGCC-TTGGTCTCCGGCACGCAGATGAGCACGAACGCGAGCGCCGCCA- 377
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GGACAGCCCGCCGAAGATGAGGAACGTCCACGCCGCCCCGATGGCGTCCGTCAGCGACAG 449
consensus_11124#1 GGACAGCC-GCCGAAGATGAGGAACGTCCACGCCGCCC-GATGGCCTCCGTCAGCGA--- 432
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GAACGACTGCGCCACCGCCAGGTTCGACACCCAGTTCGCCGTCGCCGCCGCGCCGCCGCA 509
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 CACGCCGCGGTGCCGCAGCGGGTAGACCTCCGAGTTCACGATCCACGGCACCGTCCCCAT 569
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 CCCCGGCGAGAAGGCGGCGATGTACAGCGCCAGCCCCGCCATCGCCAGCCACCCGTACCT 629
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GCTCGGGCACCCCCGCGTGTACCACTCCCTCCCCTCGCCGCGGCACGCGTCGCGAGCCGT 689
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GGCGTTCGACGCCGCCGCCGCCGCCGCCAGGCACGCCCCGGCGCGCAGCTTGTCGCCGCC 749
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GCCCGCCGCGCAGAACCCACACCCCGCCGACGCCGCCGCTGCCTTGAGACACCTCGTGCA 809
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GTCCCAGAACGACGACGACGAGCGGGAGGAGTAGTCCGGGCATGTGAGCGCGCCGCCGTG 869
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GAAGTGGGCGGTCTCGGCGGCGCCGACGGGCGGGGAGTGGGAGGTGGCCTCGTGGAACAC 929
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GGCGGAGAGGAGGGCGAGGGAGAGGATGACGCCGGCGAGGCTGATGACGAGCAGCTTGCG 989
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 CCGCCCGGTGCGGTCGATGAAGTAGATGCTGACGAGGGAGCCGGCGGCGTTGAGGCCGGC 1049
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GGTGACGAGGGACAGCGCGAGCGCCGTCTGGTTGGAGGCGAACCCGGCGAGCTGCACGAT 1109
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GGTGGGGCTGTAGTACATCACCGTGTTGATCCCCACCAGCTGCTGGAACACCTGCAGCCC 1169
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 GACGCCGGCGACCAGCCCCCGCCGCACCGTCGCCGTCGTCATCAGCAGCGCCACCAGGCT 1229
consensus_11124#1 ------------------------------------------------------------
consensus_11124#3 ------------------------------------------------------------
consensus_11124#2 ------------------------------------------------------------
consensus_11124#0 CGTCTTCTCCGACGAGCT 1247
consensus_11124#1 ------------------
consensus_11124#3 ------------------
consensus_11124#2 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||