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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1276 fasta sequence
[CTCGCCTCGCCTCGCTCCCGCTGCCCTCAAATCCCCGATCTCCCCGACCCGCATCCACAGTTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGATTCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAACTTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTC-TTCAGGTGATGA-GGATGAG-AAGAAGGA-GATTGAGATA-GAAGTCAAAGCCAAGATTGT-GGACAAGGAAGAGGTGAAGC-TTGATTCAGATGATGGCGCAAAGTCCGCGGTAAAAAGTAAGGACTCAAAGAAAGACAA-GGAAAATAAAAAATCAGACAAGAAGGACGATGAACATGACGATGAGGATGAAGAGGGAAAGAAGAAAGAAAAGGAGATGAAAGAAAAGAAGAAAGACAAGAGTGATAAGAAGGAAGAAGGCAAGAAGAAAAAGGATGGTGATGAGGAGGAAGGTAAGAAGAAAGAAAAGAAGAAAGACAAGGATGGCGATGAGAAAGAAGGCAAGAAAGAGAAGAAGAAAGACAAGGACGGTGATGAGGAGGAAGAAGGTAAGAAGAAAGAGAAGAAGAAGAAAGACAAGGGTGACA-AGGAGAAGACGAATGATCCCGCGA-AGC-TTAAGGCG-AAACTGGAGAAGAT-TGACACCAAGAT-ACAAGACCTTCAAGCTAAGAAGGAAGAC-ATCCT-GAGGCAGCTGAAGGAGCAGCT-GAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAGAGAAGCCT-GCAC-AGACAT-TGG-AAAAGGGCATCGAGCACAACAAGCCCA-TTGAGGAGAAGCCCGCTGAGACAGTGGAAGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATGTT-GCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGG-TTTTTTGCTTGTAACAAGAATTGTGATCTGGATCTCTGTGTGCAGCAAAGTATAGATATATCACATACTTTTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTA-CTGTATACGGCTGGCTGA-GAATAAAAGGATCTTTACTACAGAAAAAAATGTGTTTTCACTCCTGAAAATATATTCTTCAGAGAGT]
[+] EMBL AK070973 [CTCGCCTCGCCTCGCTCCCGCTGCCCTCAAATCCCCGATCTCCCCGACCCGCATCCACAGTTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGATTCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAACTTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTC TTCAGGTGATGA GGATGAG AAGAAGGA GATTGAGATA GAAGTCAAAGCCAAGATTGT GGACAAGGAAGAGGTGAAGC TTGATTCAGATGATGGCGCAAAGTCCGCGGTAAAAAGTAAGGACTCAAAGAAAGACAA GGAAAATAAAAAATCAGACAAGAAGGACGATGAACATGACGATGAGGATGAAGAGGGAAAGAAGAAAGAAAAGGAGATGAAAGAAAAGAAGAAAGACAAGAGTGATAAGAAGGAAGAAGGCAAGAAGAAAAAGGATGGTGATGAGGAGGAAGGTAAGAAGAAAGAAAAGAAGAAAGACAAGGATGGCGATGAGAAAGAAGGCAAGAAAGAGAAGAAGAAAGACAAGGACGGTGATGAGGAGGAAGAAGGTAAGAAGAAAGAGAAGAAGAAGAAAGACAAGGGTGACA AGGAGAAGACGAATGATCCCGCGA AGC TTAAGGCG AAACTGGAGAAGAT TGACACCAAGAT ACAAGACCTTCAAGCTAAGAAGGAAGAC ATCCT GAGGCAGCTGAAGGAGCAGCT GAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAGAGAAGCCT GCAC AGACAT TGG AAAAGGGCATCGAGCACAACAAGCCCA TTGAGGAGAAGCCCGCTGAGACAGTGGAAGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATGTT GCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGG TTTTTTGCTTGTAACAAGAATTGTGATCTGGATCTCTGTGTGCAGCAAAGTATAGATATATCACATACTTTTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTA CTGTATACGGCTGGCTGA GAATAAAAGGATCTTTACTACAGAATGCTTTGTGTTTTCACTCCTGAAAATATATTCTTCAGAGAGT]
[+] EMBL C73360 [ GCATCCACAGTTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGATTCGCCGGCCGCGACGG CACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAACTTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTCTTTCAGGTGATGAGGGATGAGNAGGAAGGAGGATTNAGATAGGAGGTCAAAGCCAAGATTGTGGGACAAGGAAGAGGTGAAGCTTTNATTCAGATGATNGCGCAAAGTCCTCGGTAAAAAGTNAGGGCTTCAAGNAAGGCAATGGGAAATNAAAAATCATGCAAGA ]
[+] EMBL AU172674 [ AACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTC TTCAGGTGATGA GGATGAG AAGAAGGA GATTGAGATA GAAGTCAAAGCCAAGATTGT GGACAAGGAAGAGGTGAAGC TTGATTCAGATGATGGCGCAAAGTCCGCGGTAAAAAGTAAGGACTCAAAGAAAGACAA GGAAAATAAAAAATCAGACAAGAAGGACGATGAACATGACGATGAGGATGAAGAGGGAAAGAAGAAAGAAAAGGAGATGAAAGAAAAGAAGAAAGACAAGAGTGATAAGAAGGAAGAAGGCAAGAAGAAAAAGGATGGTGATGAGGAGGAAGGTAAGAAGAAAGAAAAGAAGAAAGACAAGGATGGCGATGAGAAAaa ]
[+] EMBL BI804993 [ GGTGACACAGGAGAAGACGAATGATCCC CGA AGC TTAAGGCG AAACTGGAGAAGAT TGAC CCCAGAT AC AGACCTTCAAGCTAAGAAGGAAGAC ATCCT GA GCAGCTGAAGGA CAGCT GAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAAT CCCTTGAAGAGAAGCCT GCAC AGACAT TGG AAAAGGGCATCGAGCACAACAAGCCC TTGAGGAGAAGCCC CTGAGACAGTGGAAGGGACCAGGGAGTGCAAGAAC ATGAAAAAGAAGAAACTCATGTT GCT CAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGGTTTTTTTGCTTGTAAC AGAATTGTGATCTGGATCTCTGTGT CAGC AAGTATAGATATATCACATACTTTTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTA CTGTATACGGCTGGCTGA GAATAAAAGGATCTTTACTACAAAAAAAAA ]
[+] EMBL BI797851 [ attcccCCCG GATAGCTTTAAGTCGTAAACTGGAGAAGATGGGACACCAAGATGACAAGACCTTCAAGCTAAGAAGGAAGACAATCCTGGAGGCAGCTGAAGGACAAGCTGGAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCAGTGAAGAGAAGCCTGGCACAAGACATGTGGAAAAAGGGCATCGAGCACAACAAGCCCATTTGAGGAGAAGCCCGCTGAGACAGTGGAAGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATGTTGGCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGG TTTTTGCTTGTAACAAGAATTGTGATCTGGATCTCTGTGTGCAGCAAAGTATAGATATATCACATACTTTTGA TTTAAGAATAT GGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTA CTGTATACGGCTGGCTGA GAAT AAAGGATCTTTACTACAGAAAAA ]
[+] EMBL AU066348 [ AGGCAGCTGAAGGAGCAGCT GAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAGAGAAGCCT GCAC AGACAT TGG AAAAGGGCATCGAGCACAACAAGCCCA TTGAGGAGAAGCCCGCTGAGACAGTGGAAGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATGTT GCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGG TTTTTTGCTTGTAACAAGAATTGTGATCTGGATCTCTGTGTTCAGCAAAGTATAGATATATCACATACTTTTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTACCTGTATACGGCTGGCTGA G ATAAAAGG TCTTTACTTCCAAAAAAAAaaaa ]
[+] EMBL OS1321805 [ AGGCAGCTGAAGGAGCAGCT GAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAGAGAAGCCT GCAC AGACAT TGG AAAAGGGCATCGAGCACAACAAGCCCA TTGAGGAGANGCCCNCTGAGACAGTNGANGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATGTT GCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGG TTTTTTGCTTGTAACAAGAATTGTGATCTGGATCTCTGTGTGCAGCAAAGTATAGATATATCACATACTTTTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTA CTGTATACGGCTNGCTGAGGANTAAAAGGGTCTTTA ]
consensusID : consensus_11125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence
[CCCGATCTCCCCGACCCGCATCCACAGTTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGATTCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAACTTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTCTTCAGGTGATGAGGATGAGAAGAAGGAGATTGAGATAGAAGTCAAAGCCAAGATTGTGGACAAGGAAGAGGTGAAGCTTGATTCATATGATGGCGCAAAGTCCGCGGTAAAAAGTAAGGACTCCAAGAAAGACAAGGAAAATAAAAAATCAAACAACAAGGACGATGAACATGACGATTAAGATGAAGAGGGGAAGAAGACTTAAAAGGAGATCTATCCCCCCCCAAAATAACAAAAGGGGGGCCCGGTACCCAGTTCCCCTATTAGTGAGTTCTATCCATTCACTGGC]
[+] EMBL CA753421 [CCCGATCTCCCCGACCCGCATCCACAGTTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGATTCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAACTTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTCTTCAGGTGATGAGGATGAGAAGAAGGAGATTGAGATAGAAGTCAAAGCCAAGATTGTGGACAAGGAAGAGGTGAAGCTTGATTCATATGATGGCGCAAAGTCCGCGGTAAAAAGTAAGGACTCCAAGAAAGACAAGGAAAATAAAAAATCAAACAACAAGGACGATGAACATGACGATTAAGATGAAGAGGGGAAGAAGACTTAAAAGGAGATCTATCCCCCCCCAAAATAACAAAAGGGGGGCCCGGTACCCAGTTCCCCTATTAGTGAGTTCTATCCATTCACTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11125#0 CTCGCCTCGCCTCGCTCCCGCTGCCCTCAAATCCCCGATCTCCCCGACCCGCATCCACAG 60
consensus_11125#1 ---------------------------------CCCGATCTCCCCGACCCGCATCCACAG 27
***************************
consensus_11125#0 TTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGAT 120
consensus_11125#1 TTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGAT 87
************************************************************
consensus_11125#0 TCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAAC 180
consensus_11125#1 TCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAAC 147
************************************************************
consensus_11125#0 TTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGC 240
consensus_11125#1 TTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGC 207
************************************************************
consensus_11125#0 GGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGAT 300
consensus_11125#1 GGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGAT 267
************************************************************
consensus_11125#0 TAAGAGCAAGGACAAGTCTTCAGGTGATGAGGATGAGAAGAAGGAGATTGAGATAGAAGT 360
consensus_11125#1 TAAGAGCAAGGACAAGTCTTCAGGTGATGAGGATGAGAAGAAGGAGATTGAGATAGAAGT 327
************************************************************
consensus_11125#0 CAAAGCCAAGATTGTGGACAAGGAAGAGGTGAAGCTTGATTCAGATGATGGCGCAAAGTC 420
consensus_11125#1 CAAAGCCAAGATTGTGGACAAGGAAGAGGTGAAGCTTGATTCATATGATGGCGCAAAGTC 387
******************************************* ****************
consensus_11125#0 CGCGGTAAAAAGTAAGGACTCAAAGAAAGACAAGGAAAATAAAAAATCAGACAAGAAGGA 480
consensus_11125#1 CGCGGTAAAAAGTAAGGACTCCAAGAAAGACAAGGAAAATAAAAAATCAAACAACAAGGA 447
********************* *************************** **** *****
consensus_11125#0 CGATGAACATGACGATGAGGATGAAGAGGGAAAGAAGAAAGAAAAGGAGATGAAAGAAAA 540
consensus_11125#1 CGATGAACATGACGATTAAGATGAAGAGGGGAAGAAGACTTAAAAGGAGATCTATCCCCC 507
**************** * *********** ******* ********** *
consensus_11125#0 GAAGAAA-GACAAGAGTGATAAGAAGGAAGAAGGCAAGAAGAAAAAGGATGGTGATGAGG 599
consensus_11125#1 CCCAAAATAACAAAAGGGGGGCCCGGTACCCAGTTCCCCTATTAGTGAGTTCTATCCATT 567
*** **** ** * * * ** * * * * *
consensus_11125#0 AGGAAGGTAAGAAGAAAGAAAAGAAGAAAGACAAGGATGGCGATGAGAAAGAAGGCAAGA 659
consensus_11125#1 CACTGGC----------------------------------------------------- 574
*
consensus_11125#0 AAGAGAAGAAGAAAGACAAGGACGGTGATGAGGAGGAAGAAGGTAAGAAGAAAGAGAAGA 719
consensus_11125#1 ------------------------------------------------------------
consensus_11125#0 AGAAGAAAGACAAGGGTGACAAGGAGAAGACGAATGATCCCGCGAAGCTTAAGGCGAAAC 779
consensus_11125#1 ------------------------------------------------------------
consensus_11125#0 TGGAGAAGATTGACACCAAGATACAAGACCTTCAAGCTAAGAAGGAAGACATCCTGAGGC 839
consensus_11125#1 ------------------------------------------------------------
consensus_11125#0 AGCTGAAGGAGCAGCTGAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAG 899
consensus_11125#1 ------------------------------------------------------------
consensus_11125#0 AGAAGCCTGCACAGACATTGGAAAAGGGCATCGAGCACAACAAGCCCATTGAGGAGAAGC 959
consensus_11125#1 ------------------------------------------------------------
consensus_11125#0 CCGCTGAGACAGTGGAAGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATG 1019
consensus_11125#1 ------------------------------------------------------------
consensus_11125#0 TTGCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGGTTTTTTGCTT 1079
consensus_11125#1 ------------------------------------------------------------
consensus_11125#0 GTAACAAGAATTGTGATCTGGATCTCTGTGTGCAGCAAAGTATAGATATATCACATACTT 1139
consensus_11125#1 ------------------------------------------------------------
consensus_11125#0 TTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTACTGTATAC 1199
consensus_11125#1 ------------------------------------------------------------
consensus_11125#0 GGCTGGCTGAGAATAAAAGGATCTTTACTACAGAAAAAAATGTGTTTTCACTCCTGAAAA 1259
consensus_11125#1 ------------------------------------------------------------
consensus_11125#0 TATATTCTTCAGAGAGT 1276
consensus_11125#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||