These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1276 fasta sequence [CTCGCCTCGCCTCGCTCCCGCTGCCCTCAAATCCCCGATCTCCCCGACCCGCATCCACAGTTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGATTCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAACTTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTC-TTCAGGTGATGA-GGATGAG-AAGAAGGA-GATTGAGATA-GAAGTCAAAGCCAAGATTGT-GGACAAGGAAGAGGTGAAGC-TTGATTCAGATGATGGCGCAAAGTCCGCGGTAAAAAGTAAGGACTCAAAGAAAGACAA-GGAAAATAAAAAATCAGACAAGAAGGACGATGAACATGACGATGAGGATGAAGAGGGAAAGAAGAAAGAAAAGGAGATGAAAGAAAAGAAGAAAGACAAGAGTGATAAGAAGGAAGAAGGCAAGAAGAAAAAGGATGGTGATGAGGAGGAAGGTAAGAAGAAAGAAAAGAAGAAAGACAAGGATGGCGATGAGAAAGAAGGCAAGAAAGAGAAGAAGAAAGACAAGGACGGTGATGAGGAGGAAGAAGGTAAGAAGAAAGAGAAGAAGAAGAAAGACAAGGGTGACA-AGGAGAAGACGAATGATCCCGCGA-AGC-TTAAGGCG-AAACTGGAGAAGAT-TGACACCAAGAT-ACAAGACCTTCAAGCTAAGAAGGAAGAC-ATCCT-GAGGCAGCTGAAGGAGCAGCT-GAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAGAGAAGCCT-GCAC-AGACAT-TGG-AAAAGGGCATCGAGCACAACAAGCCCA-TTGAGGAGAAGCCCGCTGAGACAGTGGAAGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATGTT-GCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGG-TTTTTTGCTTGTAACAAGAATTGTGATCTGGATCTCTGTGTGCAGCAAAGTATAGATATATCACATACTTTTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTA-CTGTATACGGCTGGCTGA-GAATAAAAGGATCTTTACTACAGAAAAAAATGTGTTTTCACTCCTGAAAATATATTCTTCAGAGAGT] [+] EMBL AK070973 [CTCGCCTCGCCTCGCTCCCGCTGCCCTCAAATCCCCGATCTCCCCGACCCGCATCCACAGTTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGATTCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAACTTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTC TTCAGGTGATGA GGATGAG AAGAAGGA GATTGAGATA GAAGTCAAAGCCAAGATTGT GGACAAGGAAGAGGTGAAGC TTGATTCAGATGATGGCGCAAAGTCCGCGGTAAAAAGTAAGGACTCAAAGAAAGACAA GGAAAATAAAAAATCAGACAAGAAGGACGATGAACATGACGATGAGGATGAAGAGGGAAAGAAGAAAGAAAAGGAGATGAAAGAAAAGAAGAAAGACAAGAGTGATAAGAAGGAAGAAGGCAAGAAGAAAAAGGATGGTGATGAGGAGGAAGGTAAGAAGAAAGAAAAGAAGAAAGACAAGGATGGCGATGAGAAAGAAGGCAAGAAAGAGAAGAAGAAAGACAAGGACGGTGATGAGGAGGAAGAAGGTAAGAAGAAAGAGAAGAAGAAGAAAGACAAGGGTGACA AGGAGAAGACGAATGATCCCGCGA AGC TTAAGGCG AAACTGGAGAAGAT TGACACCAAGAT ACAAGACCTTCAAGCTAAGAAGGAAGAC ATCCT GAGGCAGCTGAAGGAGCAGCT GAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAGAGAAGCCT GCAC AGACAT TGG AAAAGGGCATCGAGCACAACAAGCCCA TTGAGGAGAAGCCCGCTGAGACAGTGGAAGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATGTT GCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGG TTTTTTGCTTGTAACAAGAATTGTGATCTGGATCTCTGTGTGCAGCAAAGTATAGATATATCACATACTTTTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTA CTGTATACGGCTGGCTGA GAATAAAAGGATCTTTACTACAGAATGCTTTGTGTTTTCACTCCTGAAAATATATTCTTCAGAGAGT] [+] EMBL C73360 [ GCATCCACAGTTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGATTCGCCGGCCGCGACGG CACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAACTTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTCTTTCAGGTGATGAGGGATGAGNAGGAAGGAGGATTNAGATAGGAGGTCAAAGCCAAGATTGTGGGACAAGGAAGAGGTGAAGCTTTNATTCAGATGATNGCGCAAAGTCCTCGGTAAAAAGTNAGGGCTTCAAGNAAGGCAATGGGAAATNAAAAATCATGCAAGA ] [+] EMBL AU172674 [ AACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTC TTCAGGTGATGA GGATGAG AAGAAGGA GATTGAGATA GAAGTCAAAGCCAAGATTGT GGACAAGGAAGAGGTGAAGC TTGATTCAGATGATGGCGCAAAGTCCGCGGTAAAAAGTAAGGACTCAAAGAAAGACAA GGAAAATAAAAAATCAGACAAGAAGGACGATGAACATGACGATGAGGATGAAGAGGGAAAGAAGAAAGAAAAGGAGATGAAAGAAAAGAAGAAAGACAAGAGTGATAAGAAGGAAGAAGGCAAGAAGAAAAAGGATGGTGATGAGGAGGAAGGTAAGAAGAAAGAAAAGAAGAAAGACAAGGATGGCGATGAGAAAaa ] [+] EMBL BI804993 [ GGTGACACAGGAGAAGACGAATGATCCC CGA AGC TTAAGGCG AAACTGGAGAAGAT TGAC CCCAGAT AC AGACCTTCAAGCTAAGAAGGAAGAC ATCCT GA GCAGCTGAAGGA CAGCT GAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAAT CCCTTGAAGAGAAGCCT GCAC AGACAT TGG AAAAGGGCATCGAGCACAACAAGCCC TTGAGGAGAAGCCC CTGAGACAGTGGAAGGGACCAGGGAGTGCAAGAAC ATGAAAAAGAAGAAACTCATGTT GCT CAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGGTTTTTTTGCTTGTAAC AGAATTGTGATCTGGATCTCTGTGT CAGC AAGTATAGATATATCACATACTTTTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTA CTGTATACGGCTGGCTGA GAATAAAAGGATCTTTACTACAAAAAAAAA ] [+] EMBL BI797851 [ attcccCCCG GATAGCTTTAAGTCGTAAACTGGAGAAGATGGGACACCAAGATGACAAGACCTTCAAGCTAAGAAGGAAGACAATCCTGGAGGCAGCTGAAGGACAAGCTGGAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCAGTGAAGAGAAGCCTGGCACAAGACATGTGGAAAAAGGGCATCGAGCACAACAAGCCCATTTGAGGAGAAGCCCGCTGAGACAGTGGAAGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATGTTGGCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGG TTTTTGCTTGTAACAAGAATTGTGATCTGGATCTCTGTGTGCAGCAAAGTATAGATATATCACATACTTTTGA TTTAAGAATAT GGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTA CTGTATACGGCTGGCTGA GAAT AAAGGATCTTTACTACAGAAAAA ] [+] EMBL AU066348 [ AGGCAGCTGAAGGAGCAGCT GAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAGAGAAGCCT GCAC AGACAT TGG AAAAGGGCATCGAGCACAACAAGCCCA TTGAGGAGAAGCCCGCTGAGACAGTGGAAGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATGTT GCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGG TTTTTTGCTTGTAACAAGAATTGTGATCTGGATCTCTGTGTTCAGCAAAGTATAGATATATCACATACTTTTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTACCTGTATACGGCTGGCTGA G ATAAAAGG TCTTTACTTCCAAAAAAAAaaaa ] [+] EMBL OS1321805 [ AGGCAGCTGAAGGAGCAGCT GAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAGAGAAGCCT GCAC AGACAT TGG AAAAGGGCATCGAGCACAACAAGCCCA TTGAGGAGANGCCCNCTGAGACAGTNGANGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATGTT GCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGG TTTTTTGCTTGTAACAAGAATTGTGATCTGGATCTCTGTGTGCAGCAAAGTATAGATATATCACATACTTTTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTA CTGTATACGGCTNGCTGAGGANTAAAAGGGTCTTTA ] consensusID : consensus_11125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [CCCGATCTCCCCGACCCGCATCCACAGTTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGATTCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAACTTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTCTTCAGGTGATGAGGATGAGAAGAAGGAGATTGAGATAGAAGTCAAAGCCAAGATTGTGGACAAGGAAGAGGTGAAGCTTGATTCATATGATGGCGCAAAGTCCGCGGTAAAAAGTAAGGACTCCAAGAAAGACAAGGAAAATAAAAAATCAAACAACAAGGACGATGAACATGACGATTAAGATGAAGAGGGGAAGAAGACTTAAAAGGAGATCTATCCCCCCCCAAAATAACAAAAGGGGGGCCCGGTACCCAGTTCCCCTATTAGTGAGTTCTATCCATTCACTGGC] [+] EMBL CA753421 [CCCGATCTCCCCGACCCGCATCCACAGTTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGATTCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAACTTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGCGGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGATTAAGAGCAAGGACAAGTCTTCAGGTGATGAGGATGAGAAGAAGGAGATTGAGATAGAAGTCAAAGCCAAGATTGTGGACAAGGAAGAGGTGAAGCTTGATTCATATGATGGCGCAAAGTCCGCGGTAAAAAGTAAGGACTCCAAGAAAGACAAGGAAAATAAAAAATCAAACAACAAGGACGATGAACATGACGATTAAGATGAAGAGGGGAAGAAGACTTAAAAGGAGATCTATCCCCCCCCAAAATAACAAAAGGGGGGCCCGGTACCCAGTTCCCCTATTAGTGAGTTCTATCCATTCACTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11125#0 CTCGCCTCGCCTCGCTCCCGCTGCCCTCAAATCCCCGATCTCCCCGACCCGCATCCACAG 60 consensus_11125#1 ---------------------------------CCCGATCTCCCCGACCCGCATCCACAG 27 *************************** consensus_11125#0 TTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGAT 120 consensus_11125#1 TTCCACACCCACCTCGTGCTCGTCGCACCGCCACCCTCTCGAGCCTCGCCGCCGCGTGAT 87 ************************************************************ consensus_11125#0 TCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAAC 180 consensus_11125#1 TCGCCGGCCGCGACGGCCACCAAGATCTCCGCCGACCGCCGCCGTCACCCGACAAGGAAC 147 ************************************************************ consensus_11125#0 TTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGC 240 consensus_11125#1 TTGAACAGCCCAGGTCATATTCCAGATGGGGAAAGATAAACAATGCGAAACTGTGGACGC 207 ************************************************************ consensus_11125#0 GGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGAT 300 consensus_11125#1 GGTCGGGATGGTGCCAATGGAGGAAGAGAAGAAGTCCAAGGAGGAGATACATCTCAAGAT 267 ************************************************************ consensus_11125#0 TAAGAGCAAGGACAAGTCTTCAGGTGATGAGGATGAGAAGAAGGAGATTGAGATAGAAGT 360 consensus_11125#1 TAAGAGCAAGGACAAGTCTTCAGGTGATGAGGATGAGAAGAAGGAGATTGAGATAGAAGT 327 ************************************************************ consensus_11125#0 CAAAGCCAAGATTGTGGACAAGGAAGAGGTGAAGCTTGATTCAGATGATGGCGCAAAGTC 420 consensus_11125#1 CAAAGCCAAGATTGTGGACAAGGAAGAGGTGAAGCTTGATTCATATGATGGCGCAAAGTC 387 ******************************************* **************** consensus_11125#0 CGCGGTAAAAAGTAAGGACTCAAAGAAAGACAAGGAAAATAAAAAATCAGACAAGAAGGA 480 consensus_11125#1 CGCGGTAAAAAGTAAGGACTCCAAGAAAGACAAGGAAAATAAAAAATCAAACAACAAGGA 447 ********************* *************************** **** ***** consensus_11125#0 CGATGAACATGACGATGAGGATGAAGAGGGAAAGAAGAAAGAAAAGGAGATGAAAGAAAA 540 consensus_11125#1 CGATGAACATGACGATTAAGATGAAGAGGGGAAGAAGACTTAAAAGGAGATCTATCCCCC 507 **************** * *********** ******* ********** * consensus_11125#0 GAAGAAA-GACAAGAGTGATAAGAAGGAAGAAGGCAAGAAGAAAAAGGATGGTGATGAGG 599 consensus_11125#1 CCCAAAATAACAAAAGGGGGGCCCGGTACCCAGTTCCCCTATTAGTGAGTTCTATCCATT 567 *** **** ** * * * ** * * * * * consensus_11125#0 AGGAAGGTAAGAAGAAAGAAAAGAAGAAAGACAAGGATGGCGATGAGAAAGAAGGCAAGA 659 consensus_11125#1 CACTGGC----------------------------------------------------- 574 * consensus_11125#0 AAGAGAAGAAGAAAGACAAGGACGGTGATGAGGAGGAAGAAGGTAAGAAGAAAGAGAAGA 719 consensus_11125#1 ------------------------------------------------------------ consensus_11125#0 AGAAGAAAGACAAGGGTGACAAGGAGAAGACGAATGATCCCGCGAAGCTTAAGGCGAAAC 779 consensus_11125#1 ------------------------------------------------------------ consensus_11125#0 TGGAGAAGATTGACACCAAGATACAAGACCTTCAAGCTAAGAAGGAAGACATCCTGAGGC 839 consensus_11125#1 ------------------------------------------------------------ consensus_11125#0 AGCTGAAGGAGCAGCTGAAAGAGGAGCTGGAAGGAGGCAAGTCCAAGAATGCCATTGAAG 899 consensus_11125#1 ------------------------------------------------------------ consensus_11125#0 AGAAGCCTGCACAGACATTGGAAAAGGGCATCGAGCACAACAAGCCCATTGAGGAGAAGC 959 consensus_11125#1 ------------------------------------------------------------ consensus_11125#0 CCGCTGAGACAGTGGAAGGGAGCAGGGAGTGCAAGAACAATGAAAAAGAAGAAACTCATG 1019 consensus_11125#1 ------------------------------------------------------------ consensus_11125#0 TTGCTGCAGCCTGATCTTTTTGAAACTCTAAATGATGTTCAGAGTTGTGGTTTTTTGCTT 1079 consensus_11125#1 ------------------------------------------------------------ consensus_11125#0 GTAACAAGAATTGTGATCTGGATCTCTGTGTGCAGCAAAGTATAGATATATCACATACTT 1139 consensus_11125#1 ------------------------------------------------------------ consensus_11125#0 TTGAGTGTAAGAATATGGGGGGTGTATCCTTGTCCAGAAAAATAGCCCTGTACTGTATAC 1199 consensus_11125#1 ------------------------------------------------------------ consensus_11125#0 GGCTGGCTGAGAATAAAAGGATCTTTACTACAGAAAAAAATGTGTTTTCACTCCTGAAAA 1259 consensus_11125#1 ------------------------------------------------------------ consensus_11125#0 TATATTCTTCAGAGAGT 1276 consensus_11125#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||