These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1154 fasta sequence [CATTGCAGACTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC-AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT-GGGAAA-TTCATGCAATATGAT-GGATGCATT-AGCTGGTGGAGCTGAGCT-AGATT-GTCGGTTGCTGT-ATCTCCC-TCTTTTCATTTATGAGCCCACTGTTTCAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCAGCACAGCTGTTATACAAATGTACTCCGTACGTTTCTTTCTCTGTGTAGAATACTACTAGAACACATGTGCTTCCCGGTCAAAAAANAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK070160 [CATTGCAGACTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTCAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGC ] [+] EMBL AK059941 [ CTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTCAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGC ] [+] EMBL CF331039 [ CTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCATAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCTAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGC ] [-] EMBL CF331040 [ CCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCTAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAGGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTCAGGaaaaaaaaa ] [+] EMBL AU065183 [ GTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACNCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACNAAATTAGATTGTGATACCATTGTAATGTGGGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGGTGCTGT ATCTCCC TCTTTTCA TTATGAGNCCACTG TTCAGGT TGCTG ] [+] EMBL AU065182 [ GTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGCAAAGAAAACACTCAANAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAANTCCATGCCATATGATGGGATGCATTAANCTGGTGGAGCTGAGCTAAGATTGGNCGGTTGCTGTAATCTCCCNCCTTTTCATTANGGAGCC ] [+] EMBL AU091438 [ CTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTNAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCAGCACAGCTGTTATACAAATGTACTCCGTACGTTTCTTTCTCTGTGTAGAATACTACTAGAACACATGTGCTTCCCGGTCAAAAAANAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [GCTGAGNTAGATTGTCGGTTGCTGTNTCTCCCTCTTTTCATTTATGAGCCCNCTGTTTCAGGTATGCTGTNCCTGGATTTCAGNGTAAAAGTNCCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCNGCACNGCTGTTATACAAAGTTACTCCGTACGTTTCTTTCTCTGTGTNGAATACTNCTNGNACANATGNGNTTNNNGGTCNAANAAAANAAAAAAAAAAAAAAAAAA] [+] EMBL AU091441 [GCTGAGNTAGATTGTCGGTTGCTGTNTCTCCCTCTTTTCATTTATGAGCCCNCTGTTTCAGGTATGCTGTNCCTGGATTTCAGNGTAAAAGTNCCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCNGCACNGCTGTTATACAAAGTTACTCCGTACGTTTCTTTCTCTGTGTNGAATACTNCTNGNACANATGNGNTTNNNGGTCNAANAAAANAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11130#0 CATTGCAGACTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCA 60 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 CCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTA 120 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 TCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGG 180 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 GCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGC 240 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 TCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTC 300 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 GTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACC 360 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 TCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGAT 420 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 CTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGA 480 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 AAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAG 540 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 TTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTA 600 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 TCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGC 660 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 ACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGCAAGAAAACACTCAAAAGAGCCAAG 720 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 GATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGA 780 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 TGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTG 840 consensus_11130#1 ------------------------------------------------------------ consensus_11130#0 TGATACCATTGTAATGTGGGAAATTCATGCAATATGATGGATGCATTAGCTGGTGGAGCT 900 consensus_11130#1 ---------------------------------------------------------GCT 3 *** consensus_11130#0 GAGCTAGATTGTCGGTTGCTGTATCTCCCTCTTTTCATTTATGAGCCCACTGTTTCAGGT 960 consensus_11130#1 GAGNTAGATTGTCGGTTGCTGTNTCTCCCTCTTTTCATTTATGAGCCCNCTGTTTCAGGT 63 *** ****************** ************************* *********** consensus_11130#0 ATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGCTTGGTCTGTGAGTGTGCC 1020 consensus_11130#1 ATGCTGTNCCTGGATTTCAGNGTAAAAGTNCCAATGTATTGCTTGGTCTGTGAGTGTGCC 123 ******* ************ ******** ****************************** consensus_11130#0 GTGTCTCCTGGAGTCCTGATCATATGCAGCACAGCTGTTATACAAATGTACTCCGTACGT 1080 consensus_11130#1 GTGTCTCCTGGAGTCCTGATCATATGCNGCACNGCTGTTATACAAAGTTACTCCGTACGT 183 *************************** **** ************* ************ consensus_11130#0 TTCTTTCTCTGTGTAGAATACTACTAGAACACATGTGCTTCCCGGTCAAAAAANAAAAAA 1140 consensus_11130#1 TTCTTTCTCTGTGTNGAATACTNCTNGNACANATGNGNTTNNNGGTCNAANAAAANAAAA 243 ************** ******* ** * *** *** * ** **** ** ** * **** consensus_11130#0 AAAAAAAAAAAAAA 1154 consensus_11130#1 AAAAAAAAAAAAAA 257 ************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||