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Oryza sativa
cluster # 11130 cluster # 11130       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11130#0 length = 1154 sequences # 7  
consensus_11130#1 length = 257 sequences # 1  

consensusID : consensus_11130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1154
fasta sequence
                              [CATTGCAGACTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC-AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT-GGGAAA-TTCATGCAATATGAT-GGATGCATT-AGCTGGTGGAGCTGAGCT-AGATT-GTCGGTTGCTGT-ATCTCCC-TCTTTTCATTTATGAGCCCACTGTTTCAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCAGCACAGCTGTTATACAAATGTACTCCGTACGTTTCTTTCTCTGTGTAGAATACTACTAGAACACATGTGCTTCCCGGTCAAAAAANAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK070160             [CATTGCAGACTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTCAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGC                                                                                                                                                        ]
[+] EMBL AK059941             [         CTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTCAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGC                                                                                                                                                        ]
[+] EMBL CF331039             [         CTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCACCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTATCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGGGCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGCTCTAGCATAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTCGTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACCTCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCTAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CF331040             [                                                                                                                                                                                                                                                                                                                                                                                                      CCCACCATCACTCCTGAGTTGAAGAAAGATCTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGAAAATCCAAGGCCCTTCCTAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAGGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTCAGGaaaaaaaaa                                                                                                                                                                                          ]
[+] EMBL AU065183             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACNCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGC AAGAAAACACTCAAAAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACNAAATTAGATTGTGATACCATTGTAATGTGGGGAAA TTCATGCAATATGAT GGATGCATT AGCTGGTGGAGCTGAGCT AGATT GTCGGGTGCTGT ATCTCCC TCTTTTCA TTATGAGNCCACTG TTCAGGT TGCTG                                                                                                                                                                                            ]
[+] EMBL AU065182             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTATTGAGCCTGCATCTGAGTTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTATCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGCACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGCAAAGAAAACACTCAANAGAGCCAAGGATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGATGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTGTGATACCATTGTAATGT GGGAAANTCCATGCCATATGATGGGATGCATTAANCTGGTGGAGCTGAGCTAAGATTGGNCGGTTGCTGTAATCTCCCNCCTTTTCATTANGGAGCC                                                                                                                                                                                                               ]
[+] EMBL AU091438             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTGAGCT AGATT GTCGGTTGCTGT ATCTCCC TCTTTTCATTTATGAGCCCACTGTTTNAGGTATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCAGCACAGCTGTTATACAAATGTACTCCGTACGTTTCTTTCTCTGTGTAGAATACTACTAGAACACATGTGCTTCCCGGTCAAAAAANAAAAAAAAAAAAAAAAAAAA]


>consensus_11130#0 CATTGCAGACTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCA CCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTA TCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGG GCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGC TCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTC GTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACC TCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGAT CTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGA AAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAG TTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTA TCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGC ACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGCAAGAAAACACTCAAAAGAGCCAAG GATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGA TGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTG TGATACCATTGTAATGTGGGAAATTCATGCAATATGATGGATGCATTAGCTGGTGGAGCT GAGCTAGATTGTCGGTTGCTGTATCTCCCTCTTTTCATTTATGAGCCCACTGTTTCAGGT ATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGCTTGGTCTGTGAGTGTGCC GTGTCTCCTGGAGTCCTGATCATATGCAGCACAGCTGTTATACAAATGTACTCCGTACGT TTCTTTCTCTGTGTAGAATACTACTAGAACACATGTGCTTCCCGGTCAAAAAANAAAAAA AAAAAAAAAAAAAA



consensusID : consensus_11130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence
                              [GCTGAGNTAGATTGTCGGTTGCTGTNTCTCCCTCTTTTCATTTATGAGCCCNCTGTTTCAGGTATGCTGTNCCTGGATTTCAGNGTAAAAGTNCCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCNGCACNGCTGTTATACAAAGTTACTCCGTACGTTTCTTTCTCTGTGTNGAATACTNCTNGNACANATGNGNTTNNNGGTCNAANAAAANAAAAAAAAAAAAAAAAAA]

[+] EMBL AU091441             [GCTGAGNTAGATTGTCGGTTGCTGTNTCTCCCTCTTTTCATTTATGAGCCCNCTGTTTCAGGTATGCTGTNCCTGGATTTCAGNGTAAAAGTNCCAATGTATTGCTTGGTCTGTGAGTGTGCCGTGTCTCCTGGAGTCCTGATCATATGCNGCACNGCTGTTATACAAAGTTACTCCGTACGTTTCTTTCTCTGTGTNGAATACTNCTNGNACANATGNGNTTNNNGGTCNAANAAAANAAAAAAAAAAAAAAAAAA]


>consensus_11130#1 GCTGAGNTAGATTGTCGGTTGCTGTNTCTCCCTCTTTTCATTTATGAGCCCNCTGTTTCA GGTATGCTGTNCCTGGATTTCAGNGTAAAAGTNCCAATGTATTGCTTGGTCTGTGAGTGT GCCGTGTCTCCTGGAGTCCTGATCATATGCNGCACNGCTGTTATACAAAGTTACTCCGTA CGTTTCTTTCTCTGTGTNGAATACTNCTNGNACANATGNGNTTNNNGGTCNAANAAAANA AAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11130#0      CATTGCAGACTCCCTCTCACGCCGCCGCCGCCTCGCCGCTTTCCTCTCTCTCCACCGCCA 60
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      CCGCCACCGCCACCGCCGGCGCGTACTCGAGCAACGTTGAGGCAGGAGTTGGGATAGGTA 120
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      TCTGAGTTGAGGTGAAGGACGGGAGCGATGGCGGAGGCGGCGCCGATTGGCCTGTCGTGG 180
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      GCGCCCAAGCTGCCCTCCCTGCCGACGACCAGCGGCGGGAAGAAGGACACGGGAGCCAGC 240
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      TCTAGCAGAGCGCAGGGGTCGCTCTGGAAGCCCGCGAGCGAGCTCGTCGACGGGCTCTTC 300
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      GTGCCACCGAGGGACCCGAGGAAGGCCAACAAGCTGGCCAGGAAGAACGTCAAGGACACC 360
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      TCCGGCAAGGGCTGGTTCGACATGCCGGCTCCCACCATCACTCCTGAGTTGAAGAAAGAT 420
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      CTTGAGATTTTGCAGCTGAGACATGTAATGGACCCAAAAAGACACTTCAAGAGGGCAGGA 480
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      AAATCCAAGGCCCTTCCGAAATACTTCCAAGTTGGTACAGTTATTGAGCCTGCATCTGAG 540
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      TTCTTCTCAAGTAGGCTGACAAAGAGGGAGCGCAAAACAACATTGGTTGATGAGCTCTTA 600
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      TCTGATCAACATCTTAAGAACTACAGGATGCGCAAAGTAAGGGAAATTCAGGAGAGCCGC 660
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      ACTCCAGGAGGCAGCCAGAAGTGGAGGAACAAGGGCAAGAAAACACTCAAAAGAGCCAAG 720
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      GATAGGCGGAAATGAGTTTTTACTGCTGCTACTCTCACTCAGTTTACCATGAGGAAGAGA 780
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      TGACTGATTATTGGGAGCTAAAGGTTGAGACAACCTTCAAATTGCGACAAAATTAGATTG 840
consensus_11130#1      ------------------------------------------------------------
                                                                                   

consensus_11130#0      TGATACCATTGTAATGTGGGAAATTCATGCAATATGATGGATGCATTAGCTGGTGGAGCT 900
consensus_11130#1      ---------------------------------------------------------GCT 3
                                                                                ***

consensus_11130#0      GAGCTAGATTGTCGGTTGCTGTATCTCCCTCTTTTCATTTATGAGCCCACTGTTTCAGGT 960
consensus_11130#1      GAGNTAGATTGTCGGTTGCTGTNTCTCCCTCTTTTCATTTATGAGCCCNCTGTTTCAGGT 63
                       *** ****************** ************************* ***********

consensus_11130#0      ATGCTGTACCTGGATTTCAGAGTAAAAGTACCAATGTATTGCTTGGTCTGTGAGTGTGCC 1020
consensus_11130#1      ATGCTGTNCCTGGATTTCAGNGTAAAAGTNCCAATGTATTGCTTGGTCTGTGAGTGTGCC 123
                       ******* ************ ******** ******************************

consensus_11130#0      GTGTCTCCTGGAGTCCTGATCATATGCAGCACAGCTGTTATACAAATGTACTCCGTACGT 1080
consensus_11130#1      GTGTCTCCTGGAGTCCTGATCATATGCNGCACNGCTGTTATACAAAGTTACTCCGTACGT 183
                       *************************** **** *************  ************

consensus_11130#0      TTCTTTCTCTGTGTAGAATACTACTAGAACACATGTGCTTCCCGGTCAAAAAANAAAAAA 1140
consensus_11130#1      TTCTTTCTCTGTGTNGAATACTNCTNGNACANATGNGNTTNNNGGTCNAANAAAANAAAA 243
                       ************** ******* ** * *** *** * **   **** ** ** * ****

consensus_11130#0      AAAAAAAAAAAAAA 1154
consensus_11130#1      AAAAAAAAAAAAAA 257
                       **************




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)