cluster # 11132

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Oryza sativa
cluster # 11132 cluster # 11132 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11132#0 length = 523 sequences # 6

consensus_11132#1 length = 266 sequences # 1
consensus_11132#2 length = 163 sequences # 1

consensusID : consensus_11132#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 523
fasta sequence

                              [GGAGAAAGAGAGAGGCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGCGCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGCCGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGTCAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC-TTC-C-TTCATCTGGCTTG-GTTAGGGTAAATTCTACTT-A-TTATTTAG-CCATGGCGACGATTGTTAAC-ATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGATTCCATGATTTGGTGCCAAGTTGTGCGTGCTGGATTCGTTCATTTTCAAAAA]

[+] EMBL AK069678             [GGAGAAAGAGAGAGGCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGCGCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGCCGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGTCAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC TTC C TTCATCTGGCTTG GTTAGGGTAAATTCTACTT A TTATTTAG CCATGGCGACGATTGTTAAC ATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGATTCCATGATTTGGTGCCAAGTTGTGCGTGCT                     ]
[+] EMBL AU183918             [            nGGCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGCGCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGCCGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGTCAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTNTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC TTN C TTCATCTGGCTTG GTTAGGGTAAATTCTACTT A TTATTTAN CCATGGCGACNATTGT                                                                                                                                                              ]
[+] EMBL AU071165             [              GCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGCGCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGCCGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGTCAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC TTC C TTCATCTGGCTTG GTTAGGGTAAATTCTACTT A TTATTTAG CCATGGCGACGATTGTTAAC ATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGAaaaaa                                               ]
[+] EMBL AU066210             [                GTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGCGCGGCCGAGAGAAATGGCGGTGGCTGCNAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGCCGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGTNAGCNACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC TTC C TTCATCTGGCTTG GTTAGGGTAAATTCTACTT A TTATTTAG CCATGGCGACGATTGTTAAC ATTTTAGGTGAGA                                                                                                                                            ]
[+] EMBL AU223275             [                                                                                                                                                                 CCCCGGCGCCCGCGCCCGTCAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTNTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC TTC C TTCATCTGGCTTG GTTAGGGTAAATTCTACTT A TTATTTAG CCATGGCGACGATTGTTAAC ATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGATTCCATGATTTGGTGCCAAGTTGTGCGTGCTGGATTCGTTCATTTTCAAAAA]
[+] EMBL BI802102             [                                                                                                                                                                                                                                                                                               TTTTCTAATCCCTTGTTCGTTCACATTCATCTGGCTTGCCTTAGGGTAAATTCTACTTGAGTTATTTAGCCCATGGCGACGATTGTTAACAATTTTAGGTGAGAT TTAGGA GTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATT GCTGTATTGGATTCCATGATTTGGTGCCAAaaa                              ]




>consensus_11132#0
GGAGAAAGAGAGAGGCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGC
GCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGC
CGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGT
CAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGT
GCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCT
TGTTCTTCCTTCATCTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCATGGCGAC
GATTGTTAACATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCATGATG
GGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGATTCCATGAT
TTGGTGCCAAGTTGTGCGTGCTGGATTCGTTCATTTTCAAAAA

consensusID : consensus_11132#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [CATACATCCTGATNCTGGTGGCTNTTGTGCTCACCTACCTAATCCATCCNCTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTCTTCCTTCATCTGGCTTGGTTNGGGTAAATTCTACTTATTATTTAGCCATNGCGACGATTNTTAACATTTTAGGTGAGATGTTNGGNGGTTTGGNGTGATTTGTCTGTCCATGATGGGNGTNGTNTCNATCNGATCGTTGTTTNNTNGTGCAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU164757             [CATACATCCTGATNCTGGTGGCTNTTGTGCTCACCTACCTAATCCATCCNCTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTCTTCCTTCATCTGGCTTGGTTNGGGTAAATTCTACTTATTATTTAGCCATNGCGACGATTNTTAACATTTTAGGTGAGATGTTNGGNGGTTTGGNGTGATTTGTCTGTCCATGATGGGNGTNGTNTCNATCNGATCGTTGTTTNNTNGTGCAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11132#1
CATACATCCTGATNCTGGTGGCTNTTGTGCTCACCTACCTAATCCATCCNCTGGATGCTT
CTTCTCCCTACAAGCTTTTCTAATCCCTTGTTCTTCCTTCATCTGGCTTGGTTNGGGTAA
ATTCTACTTATTATTTAGCCATNGCGACGATTNTTAACATTTTAGGTGAGATGTTNGGNG
GTTTGGNGTGATTTGTCTGTCCATGATGGGNGTNGTNTCNATCNGATCGTTGTTTNNTNG
TGCAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_11132#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence

                              [CTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCACTGGCGACGATTGTTAACCTTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCACTGATGGGGGTGGTATCATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTAAAAAAAAAAA]

[+] EMBL BI805212             [CTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCACTGGCGACGATTGTTAACCTTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCACTGATGGGGGTGGTATCATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTAAAAAAAAAAA]




>consensus_11132#2
CTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCACTGGCGACGATTGTTAACCTT
TTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCACTGATGGGGGTGGTATCA
TCAGATCGTTGTTTGGTGGTGCGATTGGCTGTAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11132#0      GGAGAAAGAGAGAGGCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGC 60
consensus_11132#2      ------------------------------------------------------------
consensus_11132#1      ------------------------------------------------------------
                                                                                   

consensus_11132#0      GCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGC 120
consensus_11132#2      ------------------------------------------------------------
consensus_11132#1      ------------------------------------------------------------
                                                                                   

consensus_11132#0      CGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGT 180
consensus_11132#2      ------------------------------------------------------------
consensus_11132#1      ------------------------------------------------------------
                                                                                   

consensus_11132#0      CAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGT 240
consensus_11132#2      ------------------------------------------------------------
consensus_11132#1      --------------------------------CATACATCCTGATNCTGGTGGCTNTTGT 28
                                                                                   

consensus_11132#0      GCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCT 300
consensus_11132#2      ------------------------------------------------------------
consensus_11132#1      GCTCACCTACCTAATCCATCCNCTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCT 88
                                                                                   

consensus_11132#0      TGTTCTTCCTTCATCTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCA-TGGCGA 359
consensus_11132#2      --------------CTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCACTGGCGA 46
consensus_11132#1      TGTTCTTCCTTCATCTGGCTTGGTTNGGGTAAATTCTACTTATTATTTAGCCA-TNGCGA 147
                                     *********** *************************** * ****

consensus_11132#0      CGATTGTTAACATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCA-TGA 418
consensus_11132#2      CGATTGTTAACCTTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCACTGA 106
consensus_11132#1      CGATTNTTAACATTTTAGGTGAGATGTTNGGNGGTTTGGNGTGATTTGTCTGTCCA-TGA 206
                       ***** ***** **************** ** ******* **************** ***

consensus_11132#0      TGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGATTCCATG 478
consensus_11132#2      TGGGGGTGGTATCA-TCAGATCGTTGTTTGGTGGTGCGATTGGCTGTAAAAAAAAAAA-- 163
consensus_11132#1      TGGGNGTNGTNTCNATCNGATCGTTGTTTNNTNGTGCAAAAAAAAAAAAAAAAAAAAAAA 266
                       **** ** ** **  ** ***********  * **** *        *    *    *  

consensus_11132#0      ATTTGGTGCCAAGTTGTGCGTGCTGGATTCGTTCATTTTCAAAAA 523
consensus_11132#2      ---------------------------------------------
consensus_11132#1      ---------------------------------------------