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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1480 fasta sequence
[TTGATGGTCTCTGGCTTTGAAAAATATTATCAGATTGCAAGGTGTTTCCGAGATGAAGATCTGCGTGCAGATAGGCAACCAGAGTTTACACAACTTGATATGGAGATTGCATTTACATCAATGGAAGATATGTTGAAGTTGAACGAAGAATTAATGAGACATATTTTCCAAGAGGTTGGTGATATCAAGCTGCCAAATCCTTTTCCAAGGCTAACCTATACGGAGGCAATGAATCGCTATGGAACAGATAGGCCTGACCTTCGTTTTGATTGGCAGCTGAAAGATGTTAGTGATGCATTTTTGGGCAGTAGCTTCAAGATTTTTGCAGATACATTAGAAAACGGGGGTGTCATCAAGGCATTATGTGTTCCTGGTGGTGCCAAAGAATTTTCAAATACTGACCTAAAGAAAGGAACTGTCTACACTGAAGCTTCCAAAGCTGGAGCCAAGGGCCTGCCTTTTCTCAAAGTTATGGACAATGGAGAGCTTGAAGGAATTGGTCCACTCGTGGCAAGTCTGAAACCTGAAAAGAAAGAGCAGTTGTTGAAACATCTAGATGCAAAATCAGGTGATCTTATCCTGTTTGCACTGGGTGAGCAATCAGCGGCTAATCGAATTCTTGGCAGATTAAGATTATTTATTGCTCATAAGCTGGAAGTGATAGATACATCAGCACATTCAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAACAGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGATATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT-CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGCTTGTAACAAGGTTTGAGTTATATAGGAACATCCATTGTTTACACCGGGCACCCAACCTGTCACA--------GCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTCATGAATCCAATAAAAAGTTTAAAGCAGATAAATTTCGTCGTGACTATTGTCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACACTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAATAACTTGAGTAAAAAAAAGTTGTAGGTGCTGTTCGTTGTTTATAAAGC]
[+] EMBL AK059454 [TTGATGGTCTCTGGCTTTGAAAAATATTATCAGATTGCAAGGTGTTTCCGAGATGAAGATCTGCGTGCAGATAGGCAACCAGAGTTTACACAACTTGATATGGAGATTGCATTTACATCAATGGAAGATATGTTGAAGTTGAACGAAGAATTAATGAGACATATTTTCCAAGAGGTTGGTGATATCAAGCTGCCAAATCCTTTTCCAAGGCTAACCTATACGGAGGCAATGAATCGCTATGGAACAGATAGGCCTGACCTTCGTTTTGATTGGCAGCTGAAAGATGTTAGTGATGCATTTTTGGGCAGTAGCTTCAAGATTTTTGCAGATACATTAGAAAACGGGGGTGTCATCAAGGCATTATGTGTTCCTGGTGGTGCCAAAGAATTTTCAAATACTGACCTAAAGAAAGGAACTGTCTACACTGAAGCTTCCAAAGCTGGAGCCAAGGGCCTGCCTTTTCTCAAAGTTATGGACAATGGAGAGCTTGAAGGAATTGGTCCACTCGTGGCAAGTCTGAAACCTGAAAAGAAAGAGCAGTTGTTGAAACATCTAGATGCAAAATCAGGTGATCTTATCCTGTTTGCACTGGGTGAGCAATCAGCGGCTAATCGAATTCTTGGCAGATTAAGATTATTTATTGCTCATAAGCTGGAAGTGATAGATACATCAGCACATTCAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAACAGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGATATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGCTTGTAACAAGGTTTGAGTTATATAGGAACATCCATTGTCTACACCGGGCACCCAACCTGTCACA GCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTCATGAATCCAATAAAA ]
[-] EMBL CB643712 [ GTTGAAACATCTAGATGCAAAATCAGGTGATCTTATCCTGTTTGCACTGGGTGAGCAATCAGCGGCTAATCGAATTCTTGGCAGATTAAGATTATTTATTGCTCATAAGCTGGAAGTGATAGATACATCAGCACATTCAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAACAGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGATATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGCTTGTAACAAGGTTTGAGTTATATAGGAACATCCATTGTCTACACCGGGCACCCAACCTGTCACA GCACATTCACCTTTTGGGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCGCATGAATCCAATAAAAAGTTTAAAGCAAAAAAAaaaaaag ]
[-] EMBL CB629024 [ ATACATCAGCACATTCAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAACAGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGATATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTGGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGTTTGTAACAAGGTTTGAGTTATATAGGAACATCCGTTGTTTACACCGGGTACCCAACCTGTCGCAGGCTCGCTGCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTC T TC AGAAAGTTTAAAGCAGATAAATTTCGTCGTGACTATTGTCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACACTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAATAACTTGAGTAAAAAAAAGTTGTAGGTGCTGTTCGTTGTTTATAAAGC]
[-] EMBL CB639010 [ CAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAACAGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGATATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGCTTGTAACAAGGTTTGAGTTATATAGGAACATCCATTGTTTACACCGGGCACCCAACCTGTCACA GCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTCATGAATCCAATAAAAA ]
[-] EMBL CA762914 [ cCCCAATCCTGAAG TTTGAATGATCTACCATCAGCTCGAGCCTGGGCTTATGCCATGATTTCCAATGGAGTGGAGATTGGAGGAGCCAGTTTGAGGATATACAAAAGTGATGTGCACCAAAGGATTTTTGAGAT ATCCGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTGGATCCCCAGCAATTGAAGGATCTTGGCTTCCGTACGTGAAGTGAGTGCACTGTTTGTAACAAGGTTTGAGTTATATAGGAACATCCGTTGTTTACACCGGGTACCCAACCTGTCGCAGGCTCGCTGCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTC T TC AGAAAGTTTAAAGCAGATAAATTTTGTCGTGACTATTGTTGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACCCTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAAAAAaaaaaa ]
[-] EMBL CB639067 [ GATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCAT CGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTGGCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGTTCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGC ]
[-] EMBL BE230448 [ GTTTGAGTTATATAGGAACATCCATTGTTTACACCGGGTACCCAACCTGTCGCAGGCTCGCTGCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTGAGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTC T TC AGAAAGTTTAAAGCAGATAAATTTCGTCGTGACTATTGTCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACACTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAATAACTTGAGTAAAAAAAAGTTGTATGTGCTGTTCGT ]
consensusID : consensus_11139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence
[ATCAATCTCTTCGTGACTATTGCCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTATCTTTT]
[+] EMBL CF330459 [ATCAATCTCTTCGTGACTATTGCCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGCTGTTGAGTTACGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTATCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11139#0 TTGATGGTCTCTGGCTTTGAAAAATATTATCAGATTGCAAGGTGTTTCCGAGATGAAGAT 60
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 CTGCGTGCAGATAGGCAACCAGAGTTTACACAACTTGATATGGAGATTGCATTTACATCA 120
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 ATGGAAGATATGTTGAAGTTGAACGAAGAATTAATGAGACATATTTTCCAAGAGGTTGGT 180
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 GATATCAAGCTGCCAAATCCTTTTCCAAGGCTAACCTATACGGAGGCAATGAATCGCTAT 240
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 GGAACAGATAGGCCTGACCTTCGTTTTGATTGGCAGCTGAAAGATGTTAGTGATGCATTT 300
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 TTGGGCAGTAGCTTCAAGATTTTTGCAGATACATTAGAAAACGGGGGTGTCATCAAGGCA 360
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 TTATGTGTTCCTGGTGGTGCCAAAGAATTTTCAAATACTGACCTAAAGAAAGGAACTGTC 420
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 TACACTGAAGCTTCCAAAGCTGGAGCCAAGGGCCTGCCTTTTCTCAAAGTTATGGACAAT 480
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 GGAGAGCTTGAAGGAATTGGTCCACTCGTGGCAAGTCTGAAACCTGAAAAGAAAGAGCAG 540
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 TTGTTGAAACATCTAGATGCAAAATCAGGTGATCTTATCCTGTTTGCACTGGGTGAGCAA 600
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 TCAGCGGCTAATCGAATTCTTGGCAGATTAAGATTATTTATTGCTCATAAGCTGGAAGTG 660
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 ATAGATACATCAGCACATTCAATTCTTTGGGTGACGGATTTTCCAATGTTTGAATGGAAC 720
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 AGTGATGAGCAGAGATACGAGGCACTACACCATCCTTTCACTGCACCAAATCCTGAAGAT 780
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 ATGAATGATCTACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAG 840
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 ATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATC 900
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 ATCGGTATCTCACCCGAGCAGGCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGAC 960
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 ATGGGTGCTCCTCCTCATGGAGGAATTGCCTATGGGTTAGATCGTTTGGTGATGCTTTTG 1020
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 GCTGGTGAAAATTCAATCCGGGATGTGATTGCTTTCCCAAAGACTACAACTGCTCAATGT 1080
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 TCACTCACCAAAGCGCCATCTCCTGTAGATCCACAGCAATTGAAGGATCTTGGCTTCCGT 1140
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 ACGTGAAGTGAGTGCACTGCTTGTAACAAGGTTTGAGTTATATAGGAACATCCATTGTTT 1200
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 ACACCGGGCACCCAACCTGTCACAGCACATTCACCTTTTGCGAATGTGCTTCTGCTCTTG 1260
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 AGAAATTTTGACCATGGATAGGCTGGTTGTCCATCTCATGAATCCAATAAAAAGTTTAAA 1320
consensus_11139#1 ------------------------------------------------------------
consensus_11139#0 GCAGATAAATTTCGTCGTGACTATTGTCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGC 1380
consensus_11139#1 ----ATCAATCTCTTCGTGACTATTGCCGGATAGCTTGTCAAGTGCCCAAGCTATTTGGC 56
** *** ** ************ *********************************
consensus_11139#0 TGTTGAGTTACACTGATAAACAGTAGAAAAAATTGGATGAGGCAATTAAAAATAACTTGA 1440
consensus_11139#1 TGTTGAGTTACGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 116
*********** **** *** * * ****** * * ** ***** ** *
consensus_11139#0 GTAAAAAAAAGTTGTAGGTGCTGTTCGTTGTTTATAAAGC 1480
consensus_11139#1 AAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTATCTTTT 156
******** ** **** ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||