These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [TACTTCACGGAGCTTCTGAGTGGTGACACAGGAGGCCTTCTTTCAGCTTCCTAGTGCACACAAGCCCCTGCTGAGTGACCCTGCCTTCCGCCCAACTCGTCGAGAAATATGCTGCAGATGAGAAGGCTTTCTTTGAAGACTACACAGGAGGCCCCACCTCAAGCTCTCCGAACTGGGGTTCGCTGATGCTTAAGAGGTTTCTAGTCTACTACTGCTAGTACCTTGCCCCTGGTACTCTTGTTTTTGCATCTAGGCTAGGCCACGTGTGAACCACCAAGACTACCACCTGTGAGTCGCCTCTGTAATAAAACCCTGTTCGGCCTATGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGGCTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATGAAATGCGGTATTGCCCTCCCGATTAAAAAAAAAA] [+] EMBL BI805356 [TACTTCACGGAGCTTCTGAGTGGTGACACAGGAGGCCTTCTTTCAGCTTCCTAGTGCACACAAGCCCCTGCTGAGTGACCCTGCCTTCCGCCCAACTCGTCGAGAAATATGCTGCAGATGAGAAGGCTTTCTTTGAAGACTACACAGGAGGCCCCACCTCAAGCTCTCCGAACTGGGGTTCGCTGATGCTTAAGAGGTTTCTAGTCTACTACTGCTAGTACCTTGCCCCTGGTACTCTTGTTTTTGCATCTAGGCTAGGCCACGTGTGAACCACCAAGACTACCACCTGTGAGTCGCCTCTGTAATAAAACCCTGTTCGGCCTATGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGGCTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATGAAATGCGGTATTGCCCTCCCGATTAAAAAAAAAA] consensusID : consensus_1114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [ACTGTGAGTCGCCTCTGTAATAAAATTTGTTCGGCCTATGGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGGCTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATGAAATGCGGTATTGCGTTCCCGATTTCCCCTGCTACTGTCTTGAACCTGCCGTGGTACAATCCTTGTTTGCTGCACTTCATTTTTAAAAAAAAAAAAAAAACCAAAAAA] [+] EMBL CA753754 [ACTGTGAGTCGCCTCTGTAATAAAATTTGTTCGGCCTATGGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGGCTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATGAAATGCGGTATTGCGTTCCCGATTTCCCCTGCTACTGTCTTGAACCTGCCGTGGTACAATCCTTGTTTGCTGCACTTCATTTTTAAAAAAAAAAAAAAAACCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1114#0 TACTTCACGGAGCTTCTGAGTGGTGACACAGGAGGCCTTCTTTCAGCTTCCTAGTGCACA 60 consensus_1114#1 ------------------------------------------------------------ consensus_1114#0 CAAGCCCCTGCTGAGTGACCCTGCCTTCCGCCCAACTCGTCGAGAAATATGCTGCAGATG 120 consensus_1114#1 ------------------------------------------------------------ consensus_1114#0 AGAAGGCTTTCTTTGAAGACTACACAGGAGGCCCCACCTCAAGCTCTCCGAACTGGGGTT 180 consensus_1114#1 ------------------------------------------------------------ consensus_1114#0 CGCTGATGCTTAAGAGGTTTCTAGTCTACTACTGCTAGTACCTTGCCCCTGGTACTCTTG 240 consensus_1114#1 ------------------------------------------------------------ consensus_1114#0 TTTTTGCATCTAGGCTAGGCCACGTGTGAACCACCAAGACTACCACCTGTGAGTCGCCTC 300 consensus_1114#1 ---------------------------------------------ACTGTGAGTCGCCTC 15 ************** consensus_1114#0 TGTAATAAAACCCTGTTCGGCCTATG-CCATCCTCAGTACGTTGTCAATGTCTCGGTGGG 359 consensus_1114#1 TGTAATAAAATT-TGTTCGGCCTATGGCCATCCTCAGTACGTTGTCAATGTCTCGGTGGG 74 ********** ************* ********************************* consensus_1114#0 CTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATG 419 consensus_1114#1 CTGTTATGCTCAACTGCAATGCTGCATCCACTGAAACCTCTTTCTAGATGTGTTGGTATG 134 ************************************************************ consensus_1114#0 AAATGCGGTATTGCCCTCCCGATTAAAAAAAAAA-------------------------- 453 consensus_1114#1 AAATGCGGTATTGCGTTCCCGATTTCCCCTGCTACTGTCTTGAACCTGCCGTGGTACAAT 194 ************** ******** * consensus_1114#0 ------------------------------------------------ consensus_1114#1 CCTTGTTTGCTGCACTTCATTTTTAAAAAAAAAAAAAAAACCAAAAAA 242 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||