cluster # 1115

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Oryza sativa
cluster # 1115 cluster # 1115 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1115#0 length = 604 sequences # 1

consensus_1115#1 length = 597 sequences # 1

consensusID : consensus_1115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [CTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCACTTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTGGTACGTTTGGACGCANATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCTTTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAGATAAATACGATNACACCGAANTTGAGGGCAACTTTGGTTCACCACGTAGATNTTATTAAACTGATTATCTNAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAATGCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAATAANATCTCTGTTATTAAATGAAACACAACAAAAAAAAACACAAAACACACACANNACAATCCAATACAACCGAACAAATAACATAATAGGAGAACACCAACAGGAAATAACACATCCCTGGGGGGGGGCCCGGTGCCCCTTTCCCCCAAATGTGAGGCAATTATACCGCCATCCCGGGCCCTGTT]

[+] EMBL CA754636             [CTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCACTTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTGGTACGTTTGGACGCANATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCTTTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAGATAAATACGATNACACCGAANTTGAGGGCAACTTTGGTTCACCACGTAGATNTTATTAAACTGATTATCTNAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAATGCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAATAANATCTCTGTTATTAAATGAAACACAACAAAAAAAAACACAAAACACACACANNACAATCCAATACAACCGAACAAATAACATAATAGGAGAACACCAACAGGAAATAACACATCCCTGGGGGGGGGCCCGGTGCCCCTTTCCCCCAAATGTGAGGCAATTATACCGCCATCCCGGGCCCTGTT]




>consensus_1115#0
CTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCACT
TGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTGG
TACGTTTGGACGCANATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCTT
TAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAGA
TAAATACGATNACACCGAANTTGAGGGCAACTTTGGTTCACCACGTAGATNTTATTAAAC
TGATTATCTNAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAATG
CTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAATA
ANATCTCTGTTATTAAATGAAACACAACAAAAAAAAACACAAAACACACACANNACAATC
CAATACAACCGAACAAATAACATAATAGGAGAACACCAACAGGAAATAACACATCCCTGG
GGGGGGGCCCGGTGCCCCTTTCCCCCAAATGTGAGGCAATTATACCGCCATCCCGGGCCC
TGTT

consensusID : consensus_1115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [CCTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCACTTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTGGTACGTTTGGACGCAAATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCTTTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAGATAAATACGATAACACCGAAATTGAGGGCAACTTTGGTTCACCACGTAGATATTATTAAACTGATTATCTAAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAATGCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAATAAAATCTCTGTTATTAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA756480             [CCTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCACTTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTGGTACGTTTGGACGCAAATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCTTTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAGATAAATACGATAACACCGAAATTGAGGGCAACTTTGGTTCACCACGTAGATATTATTAAACTGATTATCTAAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAATGCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAATAAAATCTCTGTTATTAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_1115#1
CCTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCAC
TTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTG
GTACGTTTGGACGCAAATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCT
TTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAG
ATAAATACGATAACACCGAAATTGAGGGCAACTTTGGTTCACCACGTAGATATTATTAAA
CTGATTATCTAAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAAT
GCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAAT
AAAATCTCTGTTATTAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1115#0      -CTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCAC 59
consensus_1115#1      CCTCCTGAATTCATATTCAACTTATCAGAATGCAATTTCGTTCTACAATCGTTCTCGCAC 60
                       ***********************************************************

consensus_1115#0      TTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTG 119
consensus_1115#1      TTGTTGCCGTAATGTTGTTCGGTTTCTTCGCTGAAATTCAAGGTAATTACATACAACGTG 120
                      ************************************************************

consensus_1115#0      GTACGTTTGGACGCANATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCT 179
consensus_1115#1      GTACGTTTGGACGCAAATTTGGTAGCTCAAGTAGCAGCAACCATGAATGGGGTAGCAGCT 180
                      *************** ********************************************

consensus_1115#0      TTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAG 239
consensus_1115#1      TTAAAGTTGGTCCAGGTGGACGTACAGAAGATGGATTTGAACGAGGAGGTTCAAAATCAG 240
                      ************************************************************

consensus_1115#0      ATAAATACGATNACACCGAANTTGAGGGCAACTTTGGTTCACCACGTAGATNTTATTAAA 299
consensus_1115#1      ATAAATACGATAACACCGAAATTGAGGGCAACTTTGGTTCACCACGTAGATATTATTAAA 300
                      *********** ******** ****************************** ********

consensus_1115#0      CTGATTATCTNAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAAT 359
consensus_1115#1      CTGATTATCTAAGCGAAGAAACCATCGAAATACTTGTTTATTTGTTTGGAAATATGGAAT 360
                      ********** *************************************************

consensus_1115#0      GCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAAT 419
consensus_1115#1      GCTCAATAGCATGTAGTATAATGTGTTTTTTTGTTAAGAAATTAAAGAATCTTGATGAAT 420
                      ************************************************************

consensus_1115#0      AANATCTCTGTTATTAAATGAAACACAACAAAAAAAAACACAAAACACACACANNACAAT 479
consensus_1115#1      AAAATCTCTGTTATTAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 480
                      ** ******************                                **     

consensus_1115#0      CCAATACAACCGAACAAATAACATAATAGGAGAACACCAACAGGAAATAACACATCCCTG 539
consensus_1115#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 540
                                                                                  

consensus_1115#0      GGGGGGGGCCCGGTGCCCCTTTCCCCCAAATGTGAGGCAATTATACCGCCATCCCGGGCC 599
consensus_1115#1      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--- 597
                                                                                  

consensus_1115#0      CTGTT 604
consensus_1115#1      -----