These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 504 fasta sequence [TGTCTCTGAATTTAACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGCGGCGGAGGGAGG-AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC-GGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTT-ATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAAACAGTTACTGAAA-TTTGCTGTTCGTCAGG-G-TTCC-CGAAAAAAAAAA] [+] EMBL AK062915 [TGTCTCTGAATTTAACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGCGGCGGAGGGAGG AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC GGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTT ATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAA ] [+] EMBL AU065905 [ ACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGCGGCGGAGGGAGG AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC GGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTNTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTTAATGTTGTTATATTGATCATCGCCAACATCGAACCATTCAAGCGCCAGTANTTACTATGTTGTTATAGATGCGGGGAATCCCATCAAAACAGTTACTGAAA TTTGCTGTTCGTCAGG G TTCC CGAAAAAA ] [+] EMBL OSS13096A [ ACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGCGGCGGAGGGAGG AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGNACAAGACGGAGAGCATGAGGGTGGAGATCANGAGCAGGCANGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC GGCCGCCGNAACAAGCGGTTCTTCCTCGCCTTCTGATTTCTGATTCATAAGTTCATCACCATCGAGAATCCAAT ] [+] EMBL AU174557 [ AAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCNCGGCGGCGGAGGGAGGNAAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC GGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTT ATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAA ] [+] EMBL AU102051 [ AAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTCGCGGCGGCGGAGGGAGG AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATC GGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTT ATGTTGTTATATTGATCATCGCCAACA ] [+] EMBL AU198134 [ GAGG AAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTNGTCGCCGCCGACTCCATCGGGCCGCCGCAACAAGCGCTTNTTCCTCGCCTTNTGATTTNTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTT ATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAAACAGTTACTGAAATTTTGCTGTTNGTCAGGAGATTCCNCGAAAAAAAAAA] consensusID : consensus_11153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [CCGGAGGGAGGAAGAAACGGGAGGAAGAAGGAGGCGCGCGGCGGCGATGATGACGTACGACACAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCACCATCGAATCCNATTAAGCACAAGAAAAAATATATTTTTGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCAACTATAATATGTTCGTTATAGATGCCGAGAATCCCATCCAATACAGTAACTGAAATTTTGCTGTTCGTCCAGGAGATTCCACGAAGAATTGTTACCGTGTTTGTGGATGGAGTGATATATATATATATACCATCCGTGTAATCGCCTATGTGTTTATTTGACTTGACTGTTCGTGAGAGAAGAGCCCNNCAAAAAGCTTAAGCTTTTCGATGAAAAAAA] [+] EMBL BM420360 [CCGGAGGGAGGAAGAAACGGGAGGAAGAAGGAGGCGCGCGGCGGCGATGATGACGTACGACACAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCACCATCGAATCCNATTAAGCACAAGAAAAAATATATTTTTGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCAACTATAATATGTTCGTTATAGATGCCGAGAATCCCATCCAATACAGTAACTGAAATTTTGCTGTTCGTCCAGGAGATTCCACGAAGAATTGTTACCGTGTTTGTGGATGGAGTGATATATATATATATACCATCCGTGTAATCGCCTATGTGTTTATTTGACTTGACTGTTCGTGAGAGAAGAGCCCNNCAAAAAGCTTAAGCTTTTCGATGAAAAAAA] consensusID : consensus_11153#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [AATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAANTTCGCGGCGGCGGAGGGAGGAAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTTATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAAACAGTTACTGAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU102052 [AATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTCAGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAANTTCGCGGCGGCGGAGGGAGGAAGACAGGGAGGAAGAAGGAGGCGGCGGCGATGATGACGTACGACAAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGCAGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCTTCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGCAAACAAAATATATATTTATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGCGACAGTATTTACTATGTTGTTATAGATGCGGAGAATCCCATCAAAACAGTTACTGAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11153#0 TGTCTCTGAATTTAACTAAATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTC 60 consensus_11153#2 ------------------AATTGTCTTCAGCTCCGTGCAGCTGCTCGTCCTGCTCAGCTC 42 consensus_11153#1 ------------------------------------------------------------ consensus_11153#0 AGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAGCTTC 120 consensus_11153#2 AGGAGATGGTGGTGATGGGGCAGCTGGGGAGGTTCATGGACGGGATCAAGTCGAAN-TTC 101 consensus_11153#1 ------------------------------------------------------------ consensus_11153#0 GCGGCGGCGGAGGGAGGAAGACA-GGGAGGAAGAAGGAGGCG----GCGGCGATGATGAC 175 consensus_11153#2 GCGGCGGCGGAGGGAGGAAGACA-GGGAGGAAGAAGGAGGCG----GCGGCGATGATGAC 156 consensus_11153#1 ------CCGGAGGGAGGAAGAAACGGGAGGAAGAAGGAGGCGCGCGGCGGCGATGATGAC 54 ************** * ****************** ************** consensus_11153#0 GTACGACA-AGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGC 234 consensus_11153#2 GTACGACA-AGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGC 215 consensus_11153#1 GTACGACACAGATGGACAAGACGGAGAGCATGAGGGTGGAGATCAGGAGCAGGCAGGCGC 114 ******** *************************************************** consensus_11153#0 AGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCT 294 consensus_11153#2 AGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCT 275 consensus_11153#1 AGAAGCTCATCGCCAAGAACCTCGTCGCCGCCGACTCCATCGGCCGCCGCAACAAGCGCT 174 ************************************************************ consensus_11153#0 TCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGC 354 consensus_11153#2 TCTTCCTCGCCTTCTGATTTCTGATTCATCAGTTCATCACCATCGAGAATCCAATTAAGC 335 consensus_11153#1 TCTTCCTCGCCTTCTGATTTCTGATTCA--------TCACCATCGA--ATCCNATTAAGC 224 **************************** ********** **** ******* consensus_11153#0 A-AACAAAATATATATTTATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGC 413 consensus_11153#2 A-AACAAAATATATATTTATGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGC 394 consensus_11153#1 ACAAGAAAAAATATATTTTTGTTGTTATATTGATCATCGCCAACATCGAAACATTCAAGC 284 * ** **** ******** ***************************************** consensus_11153#0 GACAGTATTTACTATGTT-GTTATAGATGCGGAGAATCCCATCAAA-ACAGTTACTGAAA 471 consensus_11153#2 GACAGTATTTACTATGTT-GTTATAGATGCGGAGAATCCCATCAAA-ACAGTTACTGAAA 452 consensus_11153#1 AAC----TATAATATGTTCGTTATAGATGCCGAGAATCCCATCCAATACAGTAACTGAAA 340 ** * ** ****** *********** ************ ** ***** ******* consensus_11153#0 TTT-GCTGTTCGTCAGGGTTCCCGAAAAAAAAAA-------------------------- 504 consensus_11153#2 AA------------AAAAAAAAAAAAAAAAAAAA-------------------------- 474 consensus_11153#1 TTTTGCTGTTCGTCCAGGAGATTCCACGAAGAATTGTTACCGTGTTTGTGGATGGAGTGA 400 * ** ** consensus_11153#0 ------------------------------------------------------------ consensus_11153#2 ------------------------------------------------------------ consensus_11153#1 TATATATATATATACCATCCGTGTAATCGCCTATGTGTTTATTTGACTTGACTGTTCGTG 460 consensus_11153#0 -------------------------------------------- consensus_11153#2 -------------------------------------------- consensus_11153#1 AGAGAAGAGCCCNNCAAAAAGCTTAAGCTTTTCGATGAAAAAAA 504 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||