These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 743 fasta sequence [AGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTTCTTGGTTTGCATAAAAAAAAAAAAAA] [+] EMBL AK059493 [AGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTTCTTGG ] [+] EMBL AU174109 [ TCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTC ] [+] EMBL OSS2759A [ AAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGAAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATC ] [+] EMBL CA753820 [ GCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTT ] [-] EMBL CA755380 [ GCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACCAGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCA ] [+] EMBL AU097187 [ cnctCAAAGG TACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTTCTTGGTTTGCATAAAAAAAA ] [+] EMBL AU174110 [ ACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTNTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTTCTTGGTTTGCATAACAAAAAAAAAAA] consensusID : consensus_11154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [ACAAGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTT] [+] EMBL AK099412 [ACAAGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACAGTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACCTTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAAGGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCCGACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCCAACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTTCCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTCTTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTTGCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCATTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11154#0 ---AGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACA 57 consensus_11154#1 ACAAGCATCACCTCACATCAAAAGAAACACAGTAGCCTTCCAGAACACACAAAAACAACA 60 ********************************************************* consensus_11154#0 GTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGC 117 consensus_11154#1 GTCACTTACCATGGCTTCTTCTGGTTGTCATCTTCTGGTTCTGCTCCTGGCCTTCTCAGC 120 ************************************************************ consensus_11154#0 CTTCCATTGCAGCTACGCAGCTCGTCATCTTTTGGACACAGCAGCTGCAGCTGCAGCACC 177 consensus_11154#1 C----------------------------------------------------------- 121 * consensus_11154#0 AGAGGCAGCCCCAGCTCAGCCCTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACC 237 consensus_11154#1 ---------------------CTCCATGCCAACAGTTCCAACCACGCTGCCTCCGATACC 160 *************************************** consensus_11154#0 TTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAA 297 consensus_11154#1 TTCCATACCTGCAGTCCCCAAGCTGACAGTGCCCCCAATGCCATCTGTTCCTATCCCAAA 220 ************************************************************ consensus_11154#0 GGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCC 357 consensus_11154#1 GGTTACCATTCCCCCAACAGCCGCTGGCACAATTCCATCTCTTCCAATTCCGGCCATTCC 280 ************************************************************ consensus_11154#0 GACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCC 417 consensus_11154#1 GACCACCATACCAACCATTCCTACAGTTCCTGTTACCCTGCCACCAATGCCCTCAATCCC 340 ************************************************************ consensus_11154#0 AACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTT 477 consensus_11154#1 AACCACTATTCCATCCATTCCCACCACAATCCCGACGACGATCCCTACCATTCCCGGGTT 400 ************************************************************ consensus_11154#0 CCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTC 537 consensus_11154#1 CCAGATGCCACCAATCCCATTCATGTCCTCACCTCCCAAAACCACTAGCCCCTGAAGTTC 460 ************************************************************ consensus_11154#0 TTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTT 597 consensus_11154#1 TTCAAGAGGATGAGACTGATATTCATGGTTACTAGTCAGGGATTTGGTTAGGCATATGTT 520 ************************************************************ consensus_11154#0 GCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCA 657 consensus_11154#1 GCCATCATATCAGTGTGTACATTTATTTGTGTTCTGTTATTGGAGTTATACTGGCTTGCA 580 ************************************************************ consensus_11154#0 TTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTT 717 consensus_11154#1 TTGGTGTGATTGTAAATGCAGCTAGGCAGTTGTACTATCATGTTTGTGAATAAATCATTT 640 ************************************************************ consensus_11154#0 CTTGGTTTGCATAAAAAAAAAAAAAA 743 consensus_11154#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||