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Oryza sativa
cluster # 11157 cluster # 11157       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11157#0 length = 687 sequences # 4  
consensus_11157#1 length = 474 sequences # 2  
consensus_11157#2 length = 399 sequences # 2  

consensusID : consensus_11157#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 687
fasta sequence
                              [TTTTTTTTTTTTTCAATCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAGGGGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC-A-GAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTTCCTCTCACGCATGGAAACGCAGGGGCAGTTCCAAAATCCTTGGGCTACCTCAGCAGCTTTGTCATCATAATGCCTACAAGGGCATAGAGGAGCTCCAAGTTGATCCTTGTGATCAGCAAGTCCCTGCAAAAATATTTTTAGTTGCTACTCAGAATCAAGAAGACACAGAAGGCAATCCTTAATTTTATACTTTTTACCAAGAAAGGGCTGGAACAATGACAACAGTCCACAGTTTATATTAAAATAAAAACAAGATGACTTCTCTCCTGTGATTAACCAGAGTAGAGGAGCTGATTGTCAGCTGAT]

[+] EMBL CA759962             [TTTTTTTTTTTTTCAATCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAGGGGCGTAGTTAATAGGCTGTTGTATTAGGGGGAGCGGGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC A GAGACTACATATACAAACTCTGGTGTCAAGCAAAATAATGGAAGAAAAGGGGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAAAAAAAGCATGCAATGGCATTCCTTCCTCTCACGCATGGAAACGCAGGGGCAGTTCCAAAATCCTTGGGCTACCTCAGCAGCTTTGTCATCATAATGCCTACAAGGGCATAGAGGAGCTCCAAGTTGATCCTTGTGATCAGCAAGTCCCTGCAAAAATATTTTTAGTTGCTACTCAGAATCAAGAAGACACAGAAGGCAATCCTTAATTTTATACTTTTTACCAAGAAAGGGCTGGAACAATGACAACAGTCCACAGTTTATATTAAAATAAAAACAAGATGACTTCTCTCCTGTGATTAACCAGAGTAGAGGAGCTGATTGTCAGCTGAT]
[-] EMBL AU075629             [                                                                     tttttttttTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC A GAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTNCAAGGTTATAGCCTGG CTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTT                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB630713             [                                                                                            TTGTATTAGTGGGACTTTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC ACCAGACTACATATACAAACTCTGGTGTCAAGCATAATAATGGAAGAAAAGGCGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AU075628             [                                                                                                                                                                                                         GAATGTCATCTTACAA GAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTT                                                                                                                                                                                                                                                                                                                  ]


>consensus_11157#0 TTTTTTTTTTTTTCAATCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGA TGCTTTGTATCAGGGGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTTCCCAT GTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTA TCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGACTACATATACAAACTCTGGT GTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTT GATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAA AAGCATGCAATGGCATTCCTTCCTCTCACGCATGGAAACGCAGGGGCAGTTCCAAAATCC TTGGGCTACCTCAGCAGCTTTGTCATCATAATGCCTACAAGGGCATAGAGGAGCTCCAAG TTGATCCTTGTGATCAGCAAGTCCCTGCAAAAATATTTTTAGTTGCTACTCAGAATCAAG AAGACACAGAAGGCAATCCTTAATTTTATACTTTTTACCAAGAAAGGGCTGGAACAATGA CAACAGTCCACAGTTTATATTAAAATAAAAACAAGATGACTTCTCTCCTGTGATTAACCA GAGTAGAGGAGCTGATTGTCAGCTGAT



consensusID : consensus_11157#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 474
fasta sequence
                              [TCCTCCTCTCTCTCTCTCTCTCTCGCTCCCTCCCTCCCGCGCGTGCCGCCGCCGCCGCCGCCGCAACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCACTCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAATGATGTCGATGGCCTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGACGCAAATGCACAGTTCGAGTTCAAGCTGGAGCTGCCGGAGCGGATGCATCTGATAAGTCGCTCGAGATTATGCGCAAATTCTCTGAGCAGTACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGG]

[+] EMBL AK099860             [TCCTCCTCTCTCTCTCTCTCTCTCGCTCCCTCCCTCCCGCGCGTGCCGCCGCCGCCGCCGCCGCAACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCACTCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAATGATGTCGATGGCCTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGACGCAAATGCACAGTTCGAGTTCAAGCTGGAGCTGCCGGAGCGGATGCATCTGATAAGTCGCTCGAGATTATGCGCAAATTCTCTGAGCAGTACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGG]
[+] EMBL CF329069             [                                                           ctgGCCACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCACTCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAATGATGTCGATGGCCTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGACGCAAATGCACAGTTCGAGTTCAAGCTGGAGCTGCCGGAGCGGATGCATCTGATAAGTCGCTCGAGATTATGCGCAAATTCTCTGAGCAGTACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGG]


>consensus_11157#1 TCCTCCTCTCTCTCTCTCTCTCTCGCTCCCTCCCTCCCGCGCGTGCCGCCGCCGCCGCCG CCGCAACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCAC TCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAATGAT GTCGATGGCCTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGACGCAA ATGCACAGTTCGAGTTCAAGCTGGAGCTGCCGGAGCGGATGCATCTGATAAGTCGCTCGA GATTATGCGCAAATTCTCTGAGCAGTACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGA GAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGC TCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGG



consensusID : consensus_11157#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 399
fasta sequence
                              [TTTTTTCTTTTTTTTTTTTTCTCGACTGGAGTCAGTCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTCCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATC-TTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT]

[+] EMBL CF329070             [TTTTTTCTTTTTTTTTTTTTCTCGACTGGAGTCAGTCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTCCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATC TTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT]
[-] EMBL AU174697             [                                                                          ttttttttTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGNGCACTGAGGGTATATCTTTTGATGGTGCGGCTTTGATCTCCTCCAAGGGTATAGCCTGGTCTTGGCCAGCAAAGTCATTG CCGGGGTAANAAAAAACATGCAANGGCA     ]


>consensus_11157#2 TTTTTTCTTTTTTTTTTTTTCTCGACTGGAGTCAGTCGGAAAATATCATACCTTTGATTC AAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAG TGGGAGCGTGTTTCCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTG TTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGAC TACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATA TCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGT CATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11157#0      ----------TTTTTTTTTTTT---------TCAATCGGAAAATATCATACCTTTGATTC 41
consensus_11157#2      TTTTTTCTTTTTTTTTTTTTCTCGACTGGAGTCAGTCGGAAAATATCATACCTTTGATTC 60
consensus_11157#1      TCCTCCTCTCTCTCTCTCTCTCTCGCTCCCTCCCTCCCGCGCGTGCCGCCGCCGCCGCCG 60
                                 * * * * *             *   * *    *  *    *        

consensus_11157#0      AAAGGATGAACAAACATGATGCTTTGTATCAGGGGCGTAGTTAATAGGCTGTTGTATTAG 101
consensus_11157#2      AAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAG 120
consensus_11157#1      CCGCAACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCAC 120
                            *    *   *    *  *  *   *  * ****    *  ***   *    * * 

consensus_11157#0      TGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTG 161
consensus_11157#2      TGGGAGCGTGTTTCCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTG 180
consensus_11157#1      TCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAA--TG 178
                       *        *     **   * * * *   ** *   *   ***   *  *  ***  **

consensus_11157#0      TTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGAC 221
consensus_11157#2      TTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGAC 240
consensus_11157#1      ATGTCGATGGC---CTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGA 235
                        ***  *   *       * **   **     * *  *        *      *****  

consensus_11157#0      TACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATA 281
consensus_11157#2      TACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATA 300
consensus_11157#1      CGCAAATGCACAGTTCGAGTTCAAGCTGGA-GCTGCCGGAGCGGATGCATCT-GATAAGT 293
                         ** ** ** * *  *   ****** * *   **   **   * ****    * * *  

consensus_11157#0      TCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGT 341
consensus_11157#2      TCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGT 360
consensus_11157#1      CGCTCGAGATTATGCGCAAATTCTCT----GAGCAGTACGCCCGCCGC-TCCAACACCTT 348
                          * **  **  *       ****       *   **  *  * *   **** **   *

consensus_11157#0      CATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTTCCTCTCACGCATGGAAACGC 401
consensus_11157#2      CATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT--------------------- 399
consensus_11157#1      CTTC-----TGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCAC 403
                       * *       * *  ** **  *   **  * * **  *                     

consensus_11157#0      AGGGGCAGTTCCAAAATCCTTGGGCTACCTCAGCAGCTTTGTCATCATAATGCCTACAAG 461
consensus_11157#2      ------------------------------------------------------------
consensus_11157#1      AAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAG 463
                                                                                   

consensus_11157#0      GGCATAGAGGAGCTCCAAGTTGATCCTTGTGATCAGCAAGTCCCTGCAAAAATATTTTTA 521
consensus_11157#2      ------------------------------------------------------------
consensus_11157#1      GTAGCACAAGG------------------------------------------------- 474
                                                                                   

consensus_11157#0      GTTGCTACTCAGAATCAAGAAGACACAGAAGGCAATCCTTAATTTTATACTTTTTACCAA 581
consensus_11157#2      ------------------------------------------------------------
consensus_11157#1      ------------------------------------------------------------
                                                                                   

consensus_11157#0      GAAAGGGCTGGAACAATGACAACAGTCCACAGTTTATATTAAAATAAAAACAAGATGACT 641
consensus_11157#2      ------------------------------------------------------------
consensus_11157#1      ------------------------------------------------------------
                                                                                   

consensus_11157#0      TCTCTCCTGTGATTAACCAGAGTAGAGGAGCTGATTGTCAGCTGAT 687
consensus_11157#2      ----------------------------------------------
consensus_11157#1      ----------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)