These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 687 fasta sequence [TTTTTTTTTTTTTCAATCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAGGGGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC-A-GAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTTCCTCTCACGCATGGAAACGCAGGGGCAGTTCCAAAATCCTTGGGCTACCTCAGCAGCTTTGTCATCATAATGCCTACAAGGGCATAGAGGAGCTCCAAGTTGATCCTTGTGATCAGCAAGTCCCTGCAAAAATATTTTTAGTTGCTACTCAGAATCAAGAAGACACAGAAGGCAATCCTTAATTTTATACTTTTTACCAAGAAAGGGCTGGAACAATGACAACAGTCCACAGTTTATATTAAAATAAAAACAAGATGACTTCTCTCCTGTGATTAACCAGAGTAGAGGAGCTGATTGTCAGCTGAT] [+] EMBL CA759962 [TTTTTTTTTTTTTCAATCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAGGGGCGTAGTTAATAGGCTGTTGTATTAGGGGGAGCGGGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC A GAGACTACATATACAAACTCTGGTGTCAAGCAAAATAATGGAAGAAAAGGGGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAAAAAAAGCATGCAATGGCATTCCTTCCTCTCACGCATGGAAACGCAGGGGCAGTTCCAAAATCCTTGGGCTACCTCAGCAGCTTTGTCATCATAATGCCTACAAGGGCATAGAGGAGCTCCAAGTTGATCCTTGTGATCAGCAAGTCCCTGCAAAAATATTTTTAGTTGCTACTCAGAATCAAGAAGACACAGAAGGCAATCCTTAATTTTATACTTTTTACCAAGAAAGGGCTGGAACAATGACAACAGTCCACAGTTTATATTAAAATAAAAACAAGATGACTTCTCTCCTGTGATTAACCAGAGTAGAGGAGCTGATTGTCAGCTGAT] [-] EMBL AU075629 [ tttttttttTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC A GAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTNCAAGGTTATAGCCTGG CTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTT ] [+] EMBL CB630713 [ TTGTATTAGTGGGACTTTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTAC ACCAGACTACATATACAAACTCTGGTGTCAAGCATAATAATGGAAGAAAAGGCGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT ] [-] EMBL AU075628 [ GAATGTCATCTTACAA GAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTT ] consensusID : consensus_11157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 474 fasta sequence [TCCTCCTCTCTCTCTCTCTCTCTCGCTCCCTCCCTCCCGCGCGTGCCGCCGCCGCCGCCGCCGCAACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCACTCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAATGATGTCGATGGCCTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGACGCAAATGCACAGTTCGAGTTCAAGCTGGAGCTGCCGGAGCGGATGCATCTGATAAGTCGCTCGAGATTATGCGCAAATTCTCTGAGCAGTACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGG] [+] EMBL AK099860 [TCCTCCTCTCTCTCTCTCTCTCTCGCTCCCTCCCTCCCGCGCGTGCCGCCGCCGCCGCCGCCGCAACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCACTCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAATGATGTCGATGGCCTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGACGCAAATGCACAGTTCGAGTTCAAGCTGGAGCTGCCGGAGCGGATGCATCTGATAAGTCGCTCGAGATTATGCGCAAATTCTCTGAGCAGTACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGG] [+] EMBL CF329069 [ ctgGCCACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCACTCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAATGATGTCGATGGCCTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGACGCAAATGCACAGTTCGAGTTCAAGCTGGAGCTGCCGGAGCGGATGCATCTGATAAGTCGCTCGAGATTATGCGCAAATTCTCTGAGCAGTACGCCCGCCGCTCCAACACCTTCTTCTGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCACAAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAGGTAGCACAAGG] consensusID : consensus_11157#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 399 fasta sequence [TTTTTTCTTTTTTTTTTTTTCTCGACTGGAGTCAGTCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTCCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATC-TTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT] [+] EMBL CF329070 [TTTTTTCTTTTTTTTTTTTTCTCGACTGGAGTCAGTCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTCCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATC TTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT] [-] EMBL AU174697 [ ttttttttTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAGTGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGNGCACTGAGGGTATATCTTTTGATGGTGCGGCTTTGATCTCCTCCAAGGGTATAGCCTGGTCTTGGCCAGCAAAGTCATTG CCGGGGTAANAAAAAACATGCAANGGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11157#0 ----------TTTTTTTTTTTT---------TCAATCGGAAAATATCATACCTTTGATTC 41 consensus_11157#2 TTTTTTCTTTTTTTTTTTTTCTCGACTGGAGTCAGTCGGAAAATATCATACCTTTGATTC 60 consensus_11157#1 TCCTCCTCTCTCTCTCTCTCTCTCGCTCCCTCCCTCCCGCGCGTGCCGCCGCCGCCGCCG 60 * * * * * * * * * * * consensus_11157#0 AAAGGATGAACAAACATGATGCTTTGTATCAGGGGCGTAGTTAATAGGCTGTTGTATTAG 101 consensus_11157#2 AAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAG 120 consensus_11157#1 CCGCAACCGCCCGCCCCCCTCGTCCGCCGCGCGCGCGTGCCGACGAGGAGTTCTCCTCAC 120 * * * * * * * * **** * *** * * * consensus_11157#0 TGGGAGCGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTG 161 consensus_11157#2 TGGGAGCGTGTTTCCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTG 180 consensus_11157#1 TCCCTCTCAGCCCCTCCCAATCCGAGAAGCAGGATCGGTGGGCTGCTGTCCAGCAA--TG 178 * * ** * * * * ** * * *** * * *** ** consensus_11157#0 TTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGAC 221 consensus_11157#2 TTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGTCATCTTACAGAGAC 240 consensus_11157#1 ATGTCGATGGC---CTCCACCACCGCCAGCCCCTTTTGCCCTTCACCCATGCCCAGAGGA 235 *** * * * ** ** * * * * ***** consensus_11157#0 TACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATA 281 consensus_11157#2 TACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATA 300 consensus_11157#1 CGCAAATGCACAGTTCGAGTTCAAGCTGGA-GCTGCCGGAGCGGATGCATCT-GATAAGT 293 ** ** ** * * * ****** * * ** ** * **** * * * consensus_11157#0 TCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGT 341 consensus_11157#2 TCTTTGATGTTGCGTCTTTGATCTCCTCCAAGGTTATAGCCTGGTCTTGTCCAGCAAAGT 360 consensus_11157#1 CGCTCGAGATTATGCGCAAATTCTCT----GAGCAGTACGCCCGCCGC-TCCAACACCTT 348 * ** ** * **** * ** * * * **** ** * consensus_11157#0 CATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCTTCCTCTCACGCATGGAAACGC 401 consensus_11157#2 CATTGTCGGGGGTAAGAAAAAGCATGCAATGGCATTCCT--------------------- 399 consensus_11157#1 CTTC-----TGTTCCGAGAAGTCCGTCACCGCCGTTGTTATCAAGGGACTTGCTGATCAC 403 * * * * ** ** * ** * * ** * consensus_11157#0 AGGGGCAGTTCCAAAATCCTTGGGCTACCTCAGCAGCTTTGTCATCATAATGCCTACAAG 461 consensus_11157#2 ------------------------------------------------------------ consensus_11157#1 AAGGATCAACTTGGAGCTCCTCTATGCCCTTGTAGGCATTATGATGACAAAGCTGCTGAG 463 consensus_11157#0 GGCATAGAGGAGCTCCAAGTTGATCCTTGTGATCAGCAAGTCCCTGCAAAAATATTTTTA 521 consensus_11157#2 ------------------------------------------------------------ consensus_11157#1 GTAGCACAAGG------------------------------------------------- 474 consensus_11157#0 GTTGCTACTCAGAATCAAGAAGACACAGAAGGCAATCCTTAATTTTATACTTTTTACCAA 581 consensus_11157#2 ------------------------------------------------------------ consensus_11157#1 ------------------------------------------------------------ consensus_11157#0 GAAAGGGCTGGAACAATGACAACAGTCCACAGTTTATATTAAAATAAAAACAAGATGACT 641 consensus_11157#2 ------------------------------------------------------------ consensus_11157#1 ------------------------------------------------------------ consensus_11157#0 TCTCTCCTGTGATTAACCAGAGTAGAGGAGCTGATTGTCAGCTGAT 687 consensus_11157#2 ---------------------------------------------- consensus_11157#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||