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Oryza sativa
cluster # 11162 cluster # 11162       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11162#0 length = 1800 sequences # 4  
consensus_11162#1 length = 689 sequences # 2  
consensus_11162#2 length = 592 sequences # 2  

consensusID : consensus_11162#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1800
fasta sequence
                              [GTTTAACCCGTCCTGCGACGCGGAGCACCGGCCGCCGCTCGCCGACGCAAGACAACGACGATGCCGAGCTTCCCTCCGCCCGGCGCCGTCACCATCTGCGAGATCAACCGCGACCTAGTTGCGGCGGATGCGGTGTCCGACGATCGAGCCAAGGATGCCTACGGGGATGTCCTCGGAATGGTCTTCAGCCCGATTCCTTTCCAGCCGGATGCGATTGTTGCCACCCACGAGCCTCCTGCTGCCACTGAAGCTGCTGAGCCTGCTGAGATTGTCCCCAGAACAAGTTTAGCTTCCACCATAGCTGAGTCCTTCAAACAAATGATCTTCCCTTCATGCGATCCAAATCTGCTACAAGAAATTGATACCCAGAAAGTAAGTTGGAATCCGCACAAGCATTGCTTGGCATTTGTATCTGGGAAGAACCAAGTTACAGTTCATGACTTTGAGGAGCCAGATAATAAAGAATCCTACATTCTAACAAGTGACCATCAAAAGGATGTTAAAGCTGTTGAATGGAGGCCAAATAGTGGAAAGATGATTGCAGTTGGGTGCAAGGGAGGGATATGCCTCTGGTCAGCATCATATCCTGGCAACGTTGCATCTGTGAAATCTGGTGTCACCTCTTCTTCCTTTGGTGCCTTTCCTAGAGGTTCTGGTGGTCAATGGATACTCGTGGACATTCTCCGTGGTTCTTCTGCTGAGCTAGTTAGCGCACTTTGTTGGAAACCTGATGGAAGATACTTGGTGTCCGCCTCTTGTAATAGCCCATCATTCACAATTTGGGACGTTTCTCAAGGGTTGGGAATGCCTATAAGACGTGGATTAAGTAGTATATCATTAGTGCAGTGGTCACCTAGTGGAGATTACCTTTTAACTGCTAAGCTTGATGGAACTTTTCACTTATGGGAAACAAATACATGGACGTCAGAACCATGGTCTTCATCTAATGGATATGTATCTGGAGCAAATTGGGATCCAGAAGGCCGTATTGTGTTATTGTCCTTTTCTAACTCAACAACACTGGGCTCAATTCACTTCTCATCAAAACCACCATCTTTAGATGCCCATCTCCTACCAGTCGAACATCCTGAAATTTCCTCTCTGATTGTCAGCCGAGGCATAGATAAATTAGCATGGGATTCTTCAGGAGAGCGCTTGGCATTATCGTTCAAAGATGGCAATGAAATGTATCATGGCCTTGTTGCTGTCTATGATGTGAGGAGATCTCCACTTGTCTCAGTTTTACTAGTTGGATTCATTAGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTTCCATAGCAAATTTAAGCAAGGACCATTGCTTTCTGTGTGCTGGAGCAGTGGCTGGTGTTGTACGTATCCCCTCATACTTCGCCCGCATTGACTCCCTAAAAGGAGTAAGTAAGGTCAAGAGATGATTGGCATGCTATTGAATTATCTTTTCAGAGAGATGCATTCTCTAGGTGCCTCAAAAATGCTGCTATGATTGTTATCCTCTTGTATGTAAAATTCTTCTCTCTGGAAGCGGTGCTATTCAATGGAGGCAAAAATAGAAAAAAAAATTCTGAAATGTATTTGGTAGCATTACAAATGTCTGTATTATACTTATTTGGAGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGACACCATTGTCTTACCATGTGTCCTTTTAGTGCATGATTACTGTTCATTAATTGGCTGCACTATTGCATGGTAAGAAACCTTGAATGAAAGGTTTAATCAGTTTCAATTGGACTTGTGTTTGAGATA]

[+] EMBL AK103286             [GTTTAACCCGTCCTGCGACGCGGAGCACCGGCCGCCGCTCGCCGACGCAAGACAACGACGATGCCGAGCTTCCCTCCGCCCGGCGCCGTCACCATCTGCGAGATCAACCGCGACCTAGTTGCGGCGGATGCGGTGTCCGACGATCGAGCCAAGGATGCCTACGGGGATGTCCTCGGAATGGTCTTCAGCCCGATTCCTTTCCAGCCGGATGCGATTGTTGCCACCCACGAGCCTCCTGCTGCCACTGAAGCTGCTGAGCCTGCTGAGATTGTCCCCAGAACAAGTTTAGCTTCCACCATAGCTGAGTCCTTCAAACAAATGATCTTCCCTTCATGCGATCCAAATCTGCTACAAGAAATTGATACCCAGAAAGTAAGTTGGAATCCGCACAAGCATTGCTTGGCATTTGTATCTGGGAAGAACCAAGTTACAGTTCATGACTTTGAGGAGCCAGATAATAAAGAATCCTACATTCTAACAAGTGACCATCAAAAGGATGTTAAAGCTGTTGAATGGAGGCCAAATAGTGGAAAGATGATTGCAGTTGGGTGCAAGGGAGGGATATGCCTCTGGTCAGCATCATATCCTGGCAACGTTGCATCTGTGAAATCTGGTGTCACCTCTTCTTCCTTTGGTGCCTTTCCTAGAGGTTCTGGTGGTCAATGGATACTCGTGGACATTCTCCGTGGTTCTTCTGCTGAGCTAGTTAGCGCACTTTGTTGGAAACCTGATGGAAGATACTTGGTGTCCGCCTCTTGTAATAGCCCATCATTCACAATTTGGGACGTTTCTCAAGGGTTGGGAATGCCTATAAGACGTGGATTAAGTAGTATATCATTAGTGCAGTGGTCACCTAGTGGAGATTACCTTTTAACTGCTAAGCTTGATGGAACTTTTCACTTATGGGAAACAAATACATGGACGTCAGAACCATGGTCTTCATCTAATGGATATGTATCTGGAGCAAATTGGGATCCAGAAGGCCGTATTGTGTTATTGTCCTTTTCTAACTCAACAACACTGGGCTCAATTCACTTCTCATCAAAACCACCATCTTTAGATGCCCATCTCCTACCAGTCGAACATCCTGAAATTTCCTCTCTGATTGTCAGCCGAGGCATAGATAAATTAGCATGGGATTCTTCAGGAGAGCGCTTGGCATTATCGTTCAAAGATGGCAATGAAATGTATCATGGCCTTGTTGCTGTCTATGATGTGAGGAGATCTCCACTTGTCTCAGTTTTACTAGTTGGATTCATTAGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTTCCATAGCAAATTTAAGCAAGGACCATTGCTTTCTGTGTGCTGGAGCAGTGGCTGGTGTTGTACGTATCCCCTCATACTTCGCCCGCATTGACTCCCTAAAAGGAGTAAGTAAGGTCAAGAGATGATTGGCATGCTATTGAATTATCTTTTCAGAGAGATGCATTCTCTAGGTGCCTCAAAAATGCTGCTATGATTGTTATCCTCTTGTATGTAAAATTCTTCTCTCTGGAAGCGGTGCTATTCAATGGAGGCAAAAATAGAAAAAAAAATTCTGAAATGTATTTGGTAGCATTACAAATGTCTGTATTATACTTATTTGGAGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGACACCATTGTCTTACCATGTGTCCTTTTAGTGCATGATTACTGTTCATTAATTGGCTGCACTATTGCATGGTAAGAAACCTTGAATGAAAGGTTT                                ]
[+] EMBL OSS1609A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCAGAAGGCCGTATTGTGTTATTGTCCTTTTCTAACTCAACAACACTGGGCTCAATTCACTTCTCATCAAAACCACCATCTTTAGATGCCCATCTCCTACCAGTCGAACATCCTGAAATTTCCTCTCTGATTGTCAGCCGAGGCATAGATAAATTAGCATGGGATTCTTCAGGAGAGCGCTTGGCATTATCGTTCAAAGATGGCAATGAAATGTATCATGGCCTTGTTGCTGTCTATGATGTGAGGAGATCTCCACTTGTCTCAGTTTTACTAGTTGGATTCATTAGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTTCCATAGCAAATTTAAGCAAGGGCCATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB674101             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTCAGGAGAGCGCTTGGCATTATCGTTCAAAGATGGCAATGAAATGTATCATGGCCTTGTTGCTGTCTATGATGTGAGGAGATCTCCACTTGTCTCAGTTTTACTAGTTGGATTCATTAGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTTCCATAGCAAATTTAAGCAAGGACCATTGCTTTCTGTGTGCTGGAGCAGTGGCTGGTGTTGTACGTATCCCCTCATACTTCGCCCGCATTGACTCCCTAAAAGGAGTAAGTAAGGTCAAGAGATGATTGGCATGCTATTGAATTATCTTTTCAGAGAGATGCATTCTCTAGGTGCCTCAAAAATGCTGCTATGATTGTTATCCTCTTGTATGTAAAATTCTTCTCTCTGGAAGCGGTGCTATTCAATGGAGGCAAAAATAGAAAAAAAAATTCTGAAATGTATTTGGTAGCATTACAAATGTCTGTATTATACTTATTTGGAGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGACACCATTGTCTTACCATGTGTCCTTTTAGTGCATGATTACTGTTCATTAATTGGCTGCACTATTGCATGGTAAGAAACCTTGAATGAAAGGTATAATCAGTTTCAATTGGACTTGTGTTTGAGATA]
[+] EMBL CB674100             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGCGCTCGGCATTATCGTTCAAAGATGGCAATGAAATGTATCATGGCCTTGTTGCTGTCTATGATGTGAGGAGATCTCCACTTGTCTCAGTTTTACTAGTTGGATTCATTAGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTTCCATAGCAAATTTAAGCAAGGACCATTGCTTTCTGTGTGCTGGAGCAGTGGCTGGTGTTGTACGTATCCCCTCATACTTCGCCCGCATTGACTCCCTAAAAGGAGTAAGTAAGGTCAAGAGATGATTGGCATGCTATTGAATTATCTTTTCAGAGAGATGCATTCTCTAGGTGCCTCAAAAATGCTGCTATGATTGTTATCCTCTTGTATGTAAAATTCTTCTCTCTGGAAGCGGTGCTATTCAATGGAGGCAAAAATAGAAAAAAAAATTCTGAAATGTATTTGGTAGCATTACAAATGTCTGTATTATACTTATTTGGAGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGACACCATTGTCTTACCATGTGTCCTTTTAGTGCATGATTACTGTTCATTAATTGGCTGCACTATTGCATGGTAAGAAACCTTGAATGAAAGGTTTAATCAGTTTCAATTGGACTTG           ]


>consensus_11162#0 GTTTAACCCGTCCTGCGACGCGGAGCACCGGCCGCCGCTCGCCGACGCAAGACAACGACG ATGCCGAGCTTCCCTCCGCCCGGCGCCGTCACCATCTGCGAGATCAACCGCGACCTAGTT GCGGCGGATGCGGTGTCCGACGATCGAGCCAAGGATGCCTACGGGGATGTCCTCGGAATG GTCTTCAGCCCGATTCCTTTCCAGCCGGATGCGATTGTTGCCACCCACGAGCCTCCTGCT GCCACTGAAGCTGCTGAGCCTGCTGAGATTGTCCCCAGAACAAGTTTAGCTTCCACCATA GCTGAGTCCTTCAAACAAATGATCTTCCCTTCATGCGATCCAAATCTGCTACAAGAAATT GATACCCAGAAAGTAAGTTGGAATCCGCACAAGCATTGCTTGGCATTTGTATCTGGGAAG AACCAAGTTACAGTTCATGACTTTGAGGAGCCAGATAATAAAGAATCCTACATTCTAACA AGTGACCATCAAAAGGATGTTAAAGCTGTTGAATGGAGGCCAAATAGTGGAAAGATGATT GCAGTTGGGTGCAAGGGAGGGATATGCCTCTGGTCAGCATCATATCCTGGCAACGTTGCA TCTGTGAAATCTGGTGTCACCTCTTCTTCCTTTGGTGCCTTTCCTAGAGGTTCTGGTGGT CAATGGATACTCGTGGACATTCTCCGTGGTTCTTCTGCTGAGCTAGTTAGCGCACTTTGT TGGAAACCTGATGGAAGATACTTGGTGTCCGCCTCTTGTAATAGCCCATCATTCACAATT TGGGACGTTTCTCAAGGGTTGGGAATGCCTATAAGACGTGGATTAAGTAGTATATCATTA GTGCAGTGGTCACCTAGTGGAGATTACCTTTTAACTGCTAAGCTTGATGGAACTTTTCAC TTATGGGAAACAAATACATGGACGTCAGAACCATGGTCTTCATCTAATGGATATGTATCT GGAGCAAATTGGGATCCAGAAGGCCGTATTGTGTTATTGTCCTTTTCTAACTCAACAACA CTGGGCTCAATTCACTTCTCATCAAAACCACCATCTTTAGATGCCCATCTCCTACCAGTC GAACATCCTGAAATTTCCTCTCTGATTGTCAGCCGAGGCATAGATAAATTAGCATGGGAT TCTTCAGGAGAGCGCTTGGCATTATCGTTCAAAGATGGCAATGAAATGTATCATGGCCTT GTTGCTGTCTATGATGTGAGGAGATCTCCACTTGTCTCAGTTTTACTAGTTGGATTCATT AGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTTCCATAGCAAATTTAAGCAA GGACCATTGCTTTCTGTGTGCTGGAGCAGTGGCTGGTGTTGTACGTATCCCCTCATACTT CGCCCGCATTGACTCCCTAAAAGGAGTAAGTAAGGTCAAGAGATGATTGGCATGCTATTG AATTATCTTTTCAGAGAGATGCATTCTCTAGGTGCCTCAAAAATGCTGCTATGATTGTTA TCCTCTTGTATGTAAAATTCTTCTCTCTGGAAGCGGTGCTATTCAATGGAGGCAAAAATA GAAAAAAAAATTCTGAAATGTATTTGGTAGCATTACAAATGTCTGTATTATACTTATTTG GAGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGACACCAT TGTCTTACCATGTGTCCTTTTAGTGCATGATTACTGTTCATTAATTGGCTGCACTATTGC ATGGTAAGAAACCTTGAATGAAAGGTTTAATCAGTTTCAATTGGACTTGTGTTTGAGATA



consensusID : consensus_11162#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 689
fasta sequence
                              [TCAGGCGAGGCATAGATAAATAGCCATGGGATTCTTCAGGAGAGCGGCTTGGCATTATCGTTCAAAGATGGCAATGAAATGTATCATGGCCTTGTTGCCGTCTATGATGTGAGGAGATCTCCACTTGTGTCAGTTGTACTAGTTGGATTCATTAGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTTCCATAGCAAATTTAAGCAAGGACCATTGCTTTTTGTGTGCTGGAGCAGTGGCTGGTGTTGTACGTATCCCCTCATACTTCGCCCGCATTGACTCCCTAAAAGGAGTAAGTAAGGTCAAGAGATGATTGGCATGCTATTGAATTATCTTTTCAGAGAGATGCATTCTCTAGGTGCCTCAAAAATGCTGCTATGATTGTTATCCTCTTGTATGTAAAATTCTTCTCTCTGGAAGCGGTGCTATTCAATGGAGGCAAAAATAGAAAAAAAAATTCTGAAATGTATTTGGTAGCATTACAAATGTCTGTATTATACTTATTTGGAGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGACACCATTGTCTTACCATGTGTCCTTTTAGTGCATGATTACTGTTCATTAATTGGCTGCACTATTGCATGGTAAGAAACCTTGAATGAAAGGTTTAATCAGTTTCCAAAAAAAAAAAAAAAAA]

[-] EMBL CA762282             [TCAGGCGAGGCATAGATAAATAGCCATGGGATTCTTCAGGAGAGCGGCTTGGCATTATCGTTCAAAGATGGCAATGAAATGTATCATGGCCTTGTTGCCGTCTATGATGTGAGGAGATCTCCACTTGTGTCAGTTGTACTAGTTGGATTCATTAGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTTCCATAGCAAATTTAAGCAAGGACCATTGCTTTTTGTGTGCTGGAGCAGTGGCTGGTGTTGTACGTATCCCCTCATACTTCGCCCGCATTGACTCCCTAAAAGGAGTAAGTAAGGTCAAGAGATGATTGGCATGCTATTGAATTATCTTTTCAGAGAGATGCATTCTCTAGGTGCCTCAAAAATGCTGCTATGATTGTTATCCTCTTGTATGTAAAATTCTTCTCTCTGGAAGCGGTGCTATTCAATGGAGGCAAAAATAGAAAAAAAAATTCTGAAATGTATTTGGTAGCATTACAAATGTCTGTATTATACTTATTTGGAGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGACACCATTGTCTTACCATGTGTCCTTTTAGTGCATGATTACTGTTCATTAATTGGCTGCACTATTGCATGGTAAGAAACCTTGAATGAAAGGTTTAATCAGTTTCCAAAAAAAAAAAAAAAAA]
[+] EMBL AU097058             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACAAATGTCTGTATTATACTTATTTGGAGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGACACCATTGTCTTAaaaaaaaa                                                                                                     ]


>consensus_11162#1 TCAGGCGAGGCATAGATAAATAGCCATGGGATTCTTCAGGAGAGCGGCTTGGCATTATCG TTCAAAGATGGCAATGAAATGTATCATGGCCTTGTTGCCGTCTATGATGTGAGGAGATCT CCACTTGTGTCAGTTGTACTAGTTGGATTCATTAGAGGACCTGGAGAAGGAGCAAAGCCA CTTGCATTTGCCTTCCATAGCAAATTTAAGCAAGGACCATTGCTTTTTGTGTGCTGGAGC AGTGGCTGGTGTTGTACGTATCCCCTCATACTTCGCCCGCATTGACTCCCTAAAAGGAGT AAGTAAGGTCAAGAGATGATTGGCATGCTATTGAATTATCTTTTCAGAGAGATGCATTCT CTAGGTGCCTCAAAAATGCTGCTATGATTGTTATCCTCTTGTATGTAAAATTCTTCTCTC TGGAAGCGGTGCTATTCAATGGAGGCAAAAATAGAAAAAAAAATTCTGAAATGTATTTGG TAGCATTACAAATGTCTGTATTATACTTATTTGGAGGGGGAAATGTATTGTCTGCGCTTG TGTTTATGCAGTTCCCCAAAGCAAGGACACCATTGTCTTACCATGTGTCCTTTTAGTGCA TGATTACTGTTCATTAATTGGCTGCACTATTGCATGGTAAGAAACCTTGAATGAAAGGTT TAATCAGTTTCCAAAAAAAAAAAAAAAAA



consensusID : consensus_11162#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 592
fasta sequence
                              [ACCATCTGCGAGATCAACCGCGACCTAGTTGCGGCGGATGCGGTGTCCGACGATGGAGCCAAGGATGCCTACGGGGATGTCCTCGGAAATGGTCTTCAGCCCGATTCCTTTCCAGTCGGATGCTCTTGTTGCCACCCACGAGCCTCCTGCTATCACTGAAGCTGCTGAGCCTTCTGAGATTGTCCCCAGAACAAGTTTAGCTTCCACCATAGCTGAGTCCTTCAAACAAATGCTCTTCCCTTCGTGCGATGTGAGTTGGTTCTTTATCATATCTTAGTGACTCAATTATTTGCCACTCTTACGAATAATATGTCTTCATTTGCAAACAGAAAAATTATTAAAGAATATTAAAGAATCCTTCAAACAAATATTAAAGAATCCTACATTCTAACAAGTGACCGACAAAACGATGTTAAAGCTGTTGAATGGAGGCCAAATAGTGAAAAGATGATTGCAGTTGGCTGCAAGTACTACTGCCAACTTAAGATGTCTGCATGTTCTTTTCATGTAATAATAATACCTGGTGGCATAATCTGCTGTTACATTGGGTTGATTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSC25301             [ACCATCTGCGAGATCAACCGCGACCTAGTTGCGGCGGATGCGGTGTCCGACGATGGAGCCAAGGATGCCTACGGGGATGTCCTCGGAAATGGTCTTCAGCCCGATTCCTTTCCAGTCGGATGCTCTTGTTGCCACCCACGAGCCTCCTGCTATCACTGAAGCTGCTGAGCCTTCTGAGATTGTCCCCAGAACAAGTTTAGCTTCCACCATAGCTGAGTCCTTCAAACAAATGCTCTTCCCTTCGTGCGATGTGAGTTGGTTCTTTATCATATCTTAGTGACTCAATTATTTGCCACTCTTACGAATAATATGTCTTCATTTGCAAACAGAA                                                                                                                                                                                                                                                                     ]
[+] EMBL C98366               [ CCATCTGCGAGNTCAACCGCGACCTAGTTGCGGCGGATGCGGTGTCCGACGATGGAGCCAAGGATGCCTNCGGGGATGTCCTCGGAAATGGTCTTCAGCCCGATTCCTTTCCAGTCGGATGCTCTTGTTGCCACCCACGAGCCTCCTGCTATCACTGAAGCTGCTGAGCCTTCTGAGATTGTCCCCAGAACAAGTTTAGCTTCCACCATAGCTGAGTCCTTCAAACAAATGCTCTTCCCTTCGTGCGATGTGAGTTGGTTCTTTATCATATCTTAGTGACTCAATTATTTGCCACTCTTACGAATAATATGTCTTCATTTGCAAACAGAAAAATTATTAAAGAATATTAAAGAATCCTTCAAACAAATATTAAAGAATCCTACATTCTAACAAGTGACCGACAAAACGATGTTAAAGCTGTTGAATGGAGGCCAAATAGTGAAAAGATGATTGCAGTTGGCTGCAAGTACTACTGCCAACTTAAGATGTCTGCATGTTCTTTTCATGTAATAATAATACCTGGTGGCATAATCTGCTGTTACATTGGGTTGATTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11162#2 ACCATCTGCGAGATCAACCGCGACCTAGTTGCGGCGGATGCGGTGTCCGACGATGGAGCC AAGGATGCCTACGGGGATGTCCTCGGAAATGGTCTTCAGCCCGATTCCTTTCCAGTCGGA TGCTCTTGTTGCCACCCACGAGCCTCCTGCTATCACTGAAGCTGCTGAGCCTTCTGAGAT TGTCCCCAGAACAAGTTTAGCTTCCACCATAGCTGAGTCCTTCAAACAAATGCTCTTCCC TTCGTGCGATGTGAGTTGGTTCTTTATCATATCTTAGTGACTCAATTATTTGCCACTCTT ACGAATAATATGTCTTCATTTGCAAACAGAAAAATTATTAAAGAATATTAAAGAATCCTT CAAACAAATATTAAAGAATCCTACATTCTAACAAGTGACCGACAAAACGATGTTAAAGCT GTTGAATGGAGGCCAAATAGTGAAAAGATGATTGCAGTTGGCTGCAAGTACTACTGCCAA CTTAAGATGTCTGCATGTTCTTTTCATGTAATAATAATACCTGGTGGCATAATCTGCTGT TACATTGGGTTGATTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11162#0      GTTTAACCCGTCCTGCGACGCGGAGCACCGGCCGCCGCTCGCCGACGCAAGACAACGACG 60
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      ATGCCGAGCTTCCCTCCGCCCGGCGCCGTCACCATCTGCGAGATCAACCGCGACCTAGTT 120
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      GCGGCGGATGCGGTGTCCGACGATCGAGCCAAGGATGCCTACGGGGATGTCCTCGGAATG 180
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      GTCTTCAGCCCGATTCCTTTCCAGCCGGATGCGATTGTTGCCACCCACGAGCCTCCTGCT 240
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      GCCACTGAAGCTGCTGAGCCTGCTGAGATTGTCCCCAGAACAAGTTTAGCTTCCACCATA 300
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      GCTGAGTCCTTCAAACAAATGATCTTCCCTTCATGCGATCCAAATCTGCTACAAGAAATT 360
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      GATACCCAGAAAGTAAGTTGGAATCCGCACAAGCATTGCTTGGCATTTGTATCTGGGAAG 420
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      AACCAAGTTACAGTTCATGACTTTGAGGAGCCAGATAATAAAGAATCCTACATTCTAACA 480
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      AGTGACCATCAAAAGGATGTTAAAGCTGTTGAATGGAGGCCAAATAGTGGAAAGATGATT 540
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      GCAGTTGGGTGCAAGGGAGGGATATGCCTCTGGTCAGCATCATATCCTGGCAACGTTGCA 600
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      TCTGTGAAATCTGGTGTCACCTCTTCTTCCTTTGGTGCCTTTCCTAGAGGTTCTGGTGGT 660
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      CAATGGATACTCGTGGACATTCTCCGTGGTTCTTCTGCTGAGCTAGTTAGCGCACTTTGT 720
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      TGGAAACCTGATGGAAGATACTTGGTGTCCGCCTCTTGTAATAGCCCATCATTCACAATT 780
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      TGGGACGTTTCTCAAGGGTTGGGAATGCCTATAAGACGTGGATTAAGTAGTATATCATTA 840
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      GTGCAGTGGTCACCTAGTGGAGATTACCTTTTAACTGCTAAGCTTGATGGAACTTTTCAC 900
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      TTATGGGAAACAAATACATGGACGTCAGAACCATGGTCTTCATCTAATGGATATGTATCT 960
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      GGAGCAAATTGGGATCCAGAAGGCCGTATTGTGTTATTGTCCTTTTCTAACTCAACAACA 1020
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      CTGGGCTCAATTCACTTCTCATCAAAACCACCATCTTTAGATGCCCATCTCCTACCAGTC 1080
consensus_11162#1      ------------------------------------------------------------
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      GAACATCCTGAAATTTCCTCTCTGATTGTCAGCCGAGGCATAGATAAATTAGCATGGGAT 1140
consensus_11162#1      ----------------------------TCAGGCGAGGCATAGATAAATAGCCATGGGAT 32
consensus_11162#2      ------------------------------------------------------------
                                                                                   

consensus_11162#0      TCTTCAGGAGAGCG-CTTGGCATTATCGTTCAAAGATGGCAATGAAATGTATCATGGCCT 1199
consensus_11162#1      TCTTCAGGAGAGCGGCTTGGCATTATCGTTCAAAGATGGCAATGAAATGTATCATGGCCT 92
consensus_11162#2      ----------------------------------ACCATCTGCGAGATCAACCGCGACCT 26
                                                              *   ** **  * *  * ***

consensus_11162#0      TGTTGCTGTCTATGATGTGAGGAGATCTCCACTTGTCTCAGTTTTACTAGTTGGATTCAT 1259
consensus_11162#1      TGTTGCCGTCTATGATGTGAGGAGATCTCCACTTGTGTCAGTTGTACTAGTTGGATTCAT 152
consensus_11162#2      AGTTGCGGC-----GGATGCGGTGTCCGACGATGGAGCCAAGGATGCCTACGGGGAT-GT 80
                        ***** *         ** ** *  *  *  * *   **    * *     **  *  *

consensus_11162#0      TAGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTTCCATAGCAAATTTAAGCA 1319
consensus_11162#1      TAGAGGACCTGGAGAAGGAGCAAAGCCACTTGCATTTGCCTTCCATAGCAAATTTAAGCA 212
consensus_11162#2      CCTCGGAAATGGTCTTCAGCCCGATTCCTTTCCAGTCGGATGCTCTTGTTGCCACCCACG 140
                           ***  ***        *  *  *  ** ** * *  * *  * *          * 

consensus_11162#0      AGGACCATTGCTTTCTGTGT-GCTGGAGCAGTGGCTGGTGTTGTACGTATCCC---CTCA 1375
consensus_11162#1      AGGACCATTGCTTTTTGTGT-GCTGGAGCAGTGGCTGGTGTTGTACGTATCCC---CTCA 268
consensus_11162#2      AGC-CTCCTGCTATCACTGAAGCTGCTGAGCCTTCTGAGATTGTCCCCAGAACAAGTTTA 199
                       **  *   **** *   **  ****  *      ***   **** *  *   *    * *

consensus_11162#0      TACTTCGCCCGCATTGACTCCCTAAAAGGAGTAAGTAAGGTCAAGAGATGATTGGCATGC 1435
consensus_11162#1      TACTTCGCCCGCATTGACTCCCTAAAAGGAGTAAGTAAGGTCAAGAGATGATTGGCATGC 328
consensus_11162#2      GCTTCCACCATAGCTGAGTCCTTCAAACAAATGC-TCTTCCCTTCGTGCGAT--GTGAGT 256
                          * * **     *** *** * ***  * *   *     *       ***  *   * 

consensus_11162#0      TATTGAATTATCTTTTCAGAGAGATGCATTCTCTAGGTGCCTCAAAAATGCTGCTATGAT 1495
consensus_11162#1      TATTGAATTATCTTTTCAGAGAGATGCATTCTCTAGGTGCCTCAAAAATGCTGCTATGAT 388
consensus_11162#2      TGGTTCTTTATCATATCTTAGTGACTCAATTATTTGCCACTCTTACGA-------ATAAT 309
                       *  *   ***** * **  ** **  ** *   * *   *    *  *       ** **

consensus_11162#0      TGTTATCCTCTTGTATGTAAAATTCTTCTCTCTGGAAGCGGTGCTATTCAATGGAGGCAA 1555
consensus_11162#1      TGTTATCCTCTTGTATGTAAAATTCTTCTCTCTGGAAGCGGTGCTATTCAATGGAGGCAA 448
consensus_11162#2      ATGTCTTCATTTGCAAACAGAAAAATTATT-----AAAGAATATTAAAGAATCCTT-CAA 363
                          * * *  *** *   * **   ** *      **    *  **   ***     ***

consensus_11162#0      AAATAGAAAAAAAAATTCTGAAATGTATTTGGTAGCATTACAAATGTCTGTATTATACTT 1615
consensus_11162#1      AAATAGAAAAAAAAATTCTGAAATGTATTTGGTAGCATTACAAATGTCTGTATTATACTT 508
consensus_11162#2      ACAAATATTAAAGAATCCTACATTCTAACAAGTGAC-CGACAAAA--CGATGTTAAAGCT 420
                       * * * *  *** *** **  * * **    **  *   *****   *  * *** *  *

consensus_11162#0      ATTTGGAGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGAC 1675
consensus_11162#1      ATTTGGAGGGGGAAATGTATTGTCTGCGCTTGTGTTTATGCAGTTCCCCAAAGCAAGGAC 568
consensus_11162#2      GTT--GAATGGAGGCCAAATAGTGAAAAGATGATTGCAGTTGGCTGCAAGTACTACTGCC 478
                        **  **  **       ** **       **  *  *    * * *    *  *  * *

consensus_11162#0      ACCATTGTCTTACCATGTGTCCTTTTAGTGCATGATTACTGTTCATTAATTGGCTGCACT 1735
consensus_11162#1      ACCATTGTCTTACCATGTGTCCTTTTAGTGCATGATTACTGTTCATTAATTGGCTGCACT 628
consensus_11162#2      AACTTAAGATGTCTGCATGTTCTTTTCATGTAATAATAATACCTGGTGGCATAATCTGCT 538
                       * * *    *  *    *** *****  ** *  * ** *      *       *   **

consensus_11162#0      ATTGCATGGTAAGAAACCTTGAATGAAAGGTTTAATCAGTTTCAATTGGACTTGTGTTTG 1795
consensus_11162#1      ATTGCATGGTAAGAAACCTTGAATGAAAGGTTTAATCAGTTTCCAAAAAAAAAAAAAAAA 688
consensus_11162#2      GTTACATTGGGTTGATTTTTTTAAAAAAAAAAAAAAAA------AAAAAAAAAAAAAAAA 592
                        ** *** *     *   **  *  ***     **  *      *    *          

consensus_11162#0      AGATA 1800
consensus_11162#1      A---- 689
consensus_11162#2      -----
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)