These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1119 fasta sequence [GTTGCTGTTCACGTCGTTGCCTAGCCACAAGGAGAAGGAAGAAGGAAAAGAAGGCAGAAGGCAGCAGCAGGAGCAGCAGGAGAAGGAGAAGGCGAGAAGAAACAATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAATCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTGGAAGGACGGCATCCACACCGACATCGCCATCAGGCCTGGAACTGGGCCTCCAATCCAAGCCCACAAGGCCATCCTTGCGACCAGGTCGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGGCTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTGAAGGAGCGCGCCATGGGGACGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCACCCGCACACTTCTCGCCAATAAAAGC-TTACCCGCCAAGACGCCTTAATAT-TCTTTTTTTTTCCTTCGTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTG----TAAATGATAGTACATGC--ATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK061535 [GTTGCTGTTCACGTCGTTGCCTAGCCACAAGGAGAAGGAAGAAGGAAAAGAAGGCAGAAGGCAGCAGCAGGAGCAGCAGGAGAAGGAGAAGGCGAGAAGAAACAATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAATCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTGGAAGGACGGCATCCACACCGACATCGCCATCAGGCCTGGAACTGGGCCTCCAATCCAAGCCCACAAGGCCATCCTTGCGACCAGGTCGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGGCTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTGAAGGAGCGCGCCATGGGGACGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCACCCGCACACTTCTCGCCAATAAAAGC TTACCCGCCAAGACGCCTTAATAT TCTTTTTTTTTCCTTCGTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTG TAAATGATAGTACATGC ATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCT ] [+] EMBL AK104218 [GTTGCTGTTCACGTCGTTGCCTAGCCACAAGGAGAAGGAAGAAGGAAAAGAAGGCAGAAGGCAGCAGCAGGAGCAGCAGGAGAAGGAGAAGGCGAGAAGAAACAATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAATCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTGGAAGGACGGCATCCACACCGACATCGCCATCAGGCCTGGAACTGGGCCTCCAATCCAAGCCCACAAGGCCATCCTTGCGACCAGGTCGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGGCTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTGAAGGAGCGCGCCATGGGGACGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCACCCGCACACTTCTCGCCAATAAAAGC TTACCCGCCAAGACGCCTTAATAT TCTTTTTTTTTCCTTCGTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTG TAAATGATAGTACATGC ATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTT ] [+] EMBL AK061388 [GTTGCTGTTCACGTCGTTGCCAAGCCACAAGGAGAAGGAAGAAGGAAGAGAAGGCAGAAGG A AGCAGCAGGAGAAGGAGAAGGCCAGAAGAAACAATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAACCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCGTGGAAAGACGGCATCCACACCGACATCGCCGTCAGGCCTGGAACTGGGCCCCCAATCCAAGCCCATAAGGCCATCCTTGCGACCAGGTCGGAGGTGTTCCGCCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCACGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCGTGCGAGGCGCGGCTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTCAAGGAGCGCGCCATGGGGGCGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTTTGCGTCCAGATCACCCGCGCTCTGCTTGCCAAT AAAGCATTTCCCGCCAAGACGCCTTAATATCCCTTTTATTTTTCTTCG TTTAGAATTTAGTTAGACGACGTACGATGTATAAGTGTAATTAAATGATAGTACATGCATATCTCTGGA ATTAATGTGATCAATATATACAATTTAGAT ] [+] EMBL AK104550 [GTTGCTGTTCACGTCGTTGCCAAGCCACAAGGAGAAGGAAGAAGGAAGAGAAGGCAGAAGG A AGCAGCAGGAGAAGGAGAAGGCCAGAAGAAACAATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAACCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCGTGGAAAGACGGCATCCACACCGACATCGCCGTCAGGCCTGGAACTGGGCCCCCAATCCAAGCCCATAAGGCCATCCTTGCGACCAGGTCGGAGGTGTTCCGCCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCACGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCGTGCGAGGCGCGGCTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTCAAGGAGCGCGCCATGGGGGCGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTTTGCGTCCAGATCACCCGCGCTCTGCTTGCCAAT AAAGCATTTCCCGCCAAGACGCCTTAATATCCCTTTTATTTTTCTTCG TTTAGAATTTAGTTAGACGACGTACGATGTATAAGTGTAATTAAATGATAGTACATGCATATCTCTGGAAt ] [+] EMBL CF298487 [ AGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCACCCGCACACTTCTCGCCAATAAAAGC TTACCCGCCAAGACGCCTTAATAT TCTTTTTTTTTCCTTCGTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTG TAAATGA ATTACATGC ATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF297886 [ CACACTTCTCGCCAATAAAAGC TTACCCGCCAAGACGCCTTAATAT TCTTTTTTTTTCCTTCGTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTG TAAATGA ATGATATGC ATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCTTTGAAAAAA ] consensusID : consensus_11167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [AGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCTGNGAAAGACGGCATCCACACCGACATCGCCGTCAGCTGGNAACTGGGCCCCCAATCCAAGCCCATAAGGCCATCCTTGTCAGTCTCTCTNTCTCTCAGTTTCAGCCCAATAGGCCGGCCTTCTTTTAGTTTGATTGGGCCCAATGAAACTAATTAGGCCCAGCTATATACAGGCGACCAGGTCGGAGGTGTTCCGCCACATNCTCGNCGGCGACGACG] [+] EMBL OSC9821 [AGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCTGNGAAAGACGGCATCCACACCGACATCGCCGTCAGCTGGNAACTGGGCCCCCAATCCAAGCCCATAAGGCCATCCTTGTCAGTCTCTCTNTCTCTCAGTTTCAGCCCAATAGGCCGGCCTTCTTTTAGTTTGATTGGGCCCAATGAAACTAATTAGGCCCAGCTATATACAGGCGACCAGGTCGGAGGTGTTCCGCCACATNCTCGNCGGCGACGACG] consensusID : consensus_11167#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence [GTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTTTGCGTCCAGATCACCCGCGCTCTGCTTGCCAATAAAGCATTTCCCGCCAAGACGCCTTAATATCCCTTTTATTTTTCTTCGTTTAGAATTTAGTTAGACGACGTACGATGTATAAGTGTAATTAAATGATAGTACATGCATATCTCTGGAATTAAAAAAAAA] [+] EMBL AU096938 [GTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTTTGCGTCCAGATCACCCGCGCTCTGCTTGCCAATAAAGCATTTCCCGCCAAGACGCCTTAATATCCCTTTTATTTTTCTTCGTTTAGAATTTAGTTAGACGACGTACGATGTATAAGTGTAATTAAATGATAGTACATGCATATCTCTGGAATTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11167#0 GTTGCTGTTCACGTCGTTGCCTAGCCACAAGGAGAAGGAAGAAGGAAAAGAAGGCAGAAG 60 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 GCAGCAGCAGGAGCAGCAGGAGAAGGAGAAGGCGAGAAGAAACAATGGATTGCTGCGTGT 120 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 GCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATG 180 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 AAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTG 240 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 ATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAATCAAGGGATTGA 300 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 GAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGG 360 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 CATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTGGAAGGACGGCATCCACACCGACATCG 420 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 CCATCAGGCCTGGAACTGGGCCTCCAATCCAAGCCCACAAGGCCATCCTTGCGACCAGGT 480 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 CGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACT 540 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 CTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACA 600 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 CGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCG 660 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 ACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGGCTGGCGGCGGGGGTGG 720 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ------------------------------------------------------------ consensus_11167#0 AGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTGA 780 consensus_11167#2 ------------------------------------------------------------ consensus_11167#1 ---AGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGA 57 consensus_11167#0 AGGAGCGCGCCATGGGGACGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGT 840 consensus_11167#2 ----------------------------------------------------------GT 2 consensus_11167#1 CCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCTGNGAAAGACGGCATCC 117 consensus_11167#0 ACGAGGAGTTCGCCGTCAG--GAACGCCGCCCTCTGCGTCCAGATCACCCGCACACTTCT 898 consensus_11167#2 ACGAGGAGTTCGCCGTCAG--GAACGCCGCCCTTTGCGTCCAGATCACCCGCGCTCTGCT 60 consensus_11167#1 ACACCGACATCGCCGTCAGCTGGNAACTGGGCCCCCAATCCAAGCCCATAAGGCCATCCT 177 ** ** ********** * * * * **** * * * ** consensus_11167#0 CGCCAATAAAAGCTTACCCGCCAAGACGCCTTAATATTCT--TTTT-TTTTCCTTCGTTG 955 consensus_11167#2 TGCCAATAAAGCATTTCCCGCCAAGACGCCTTAATATCCC--TTTTATTTTTCTTCG--- 115 consensus_11167#1 TGTCAGTCTCTC-TNTCTCTCAGTTTCAGCCCAATAGGCCGGCCTTCTTTTAGTTTGATT 236 * ** * * * * * * * **** * ** **** ** * consensus_11167#0 ATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTGTAA----ATGATAG---TACAT 1008 consensus_11167#2 -TTTAGAATTTAGTTAGACGACGTACGATGTATAAGTGTAATTAAATGATAG---TACAT 171 consensus_11167#1 GGGCCCAATGAAACTAATTAGGCCCAGCTATATACAGGCGACCAGGTCGGAGGTGTTCCG 296 *** * ** * * **** * * * ** * * consensus_11167#0 GCATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCTTTGAAAAAA 1068 consensus_11167#2 GCATATCTCTGGAATTAAAAAAAAA----------------------------------- 196 consensus_11167#1 CCACATNCTCGNCGGCGACGACG------------------------------------- 319 ** * * consensus_11167#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1119 consensus_11167#2 --------------------------------------------------- consensus_11167#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||