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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1119 fasta sequence
[GTTGCTGTTCACGTCGTTGCCTAGCCACAAGGAGAAGGAAGAAGGAAAAGAAGGCAGAAGGCAGCAGCAGGAGCAGCAGGAGAAGGAGAAGGCGAGAAGAAACAATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAATCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTGGAAGGACGGCATCCACACCGACATCGCCATCAGGCCTGGAACTGGGCCTCCAATCCAAGCCCACAAGGCCATCCTTGCGACCAGGTCGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGGCTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTGAAGGAGCGCGCCATGGGGACGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCACCCGCACACTTCTCGCCAATAAAAGC-TTACCCGCCAAGACGCCTTAATAT-TCTTTTTTTTTCCTTCGTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTG----TAAATGATAGTACATGC--ATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK061535 [GTTGCTGTTCACGTCGTTGCCTAGCCACAAGGAGAAGGAAGAAGGAAAAGAAGGCAGAAGGCAGCAGCAGGAGCAGCAGGAGAAGGAGAAGGCGAGAAGAAACAATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAATCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTGGAAGGACGGCATCCACACCGACATCGCCATCAGGCCTGGAACTGGGCCTCCAATCCAAGCCCACAAGGCCATCCTTGCGACCAGGTCGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGGCTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTGAAGGAGCGCGCCATGGGGACGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCACCCGCACACTTCTCGCCAATAAAAGC TTACCCGCCAAGACGCCTTAATAT TCTTTTTTTTTCCTTCGTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTG TAAATGATAGTACATGC ATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCT ]
[+] EMBL AK104218 [GTTGCTGTTCACGTCGTTGCCTAGCCACAAGGAGAAGGAAGAAGGAAAAGAAGGCAGAAGGCAGCAGCAGGAGCAGCAGGAGAAGGAGAAGGCGAGAAGAAACAATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAATCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTGGAAGGACGGCATCCACACCGACATCGCCATCAGGCCTGGAACTGGGCCTCCAATCCAAGCCCACAAGGCCATCCTTGCGACCAGGTCGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGGCTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTGAAGGAGCGCGCCATGGGGACGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCACCCGCACACTTCTCGCCAATAAAAGC TTACCCGCCAAGACGCCTTAATAT TCTTTTTTTTTCCTTCGTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTG TAAATGATAGTACATGC ATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTT ]
[+] EMBL AK061388 [GTTGCTGTTCACGTCGTTGCCAAGCCACAAGGAGAAGGAAGAAGGAAGAGAAGGCAGAAGG A AGCAGCAGGAGAAGGAGAAGGCCAGAAGAAACAATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAACCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCGTGGAAAGACGGCATCCACACCGACATCGCCGTCAGGCCTGGAACTGGGCCCCCAATCCAAGCCCATAAGGCCATCCTTGCGACCAGGTCGGAGGTGTTCCGCCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCACGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCGTGCGAGGCGCGGCTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTCAAGGAGCGCGCCATGGGGGCGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTTTGCGTCCAGATCACCCGCGCTCTGCTTGCCAAT AAAGCATTTCCCGCCAAGACGCCTTAATATCCCTTTTATTTTTCTTCG TTTAGAATTTAGTTAGACGACGTACGATGTATAAGTGTAATTAAATGATAGTACATGCATATCTCTGGA ATTAATGTGATCAATATATACAATTTAGAT ]
[+] EMBL AK104550 [GTTGCTGTTCACGTCGTTGCCAAGCCACAAGGAGAAGGAAGAAGGAAGAGAAGGCAGAAGG A AGCAGCAGGAGAAGGAGAAGGCCAGAAGAAACAATGGATTGCTGCGTGTGCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATGAAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTGATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAACCAAGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCGTGGAAAGACGGCATCCACACCGACATCGCCGTCAGGCCTGGAACTGGGCCCCCAATCCAAGCCCATAAGGCCATCCTTGCGACCAGGTCGGAGGTGTTCCGCCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACTCTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACACGGGCTCCCTGGCGACGTGCACGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCGACAAGTACGACGTGCCGTTCCTCCGGCGAGCGTGCGAGGCGCGGCTGGCGGCGGGGGTGGAGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTCAAGGAGCGCGCCATGGGGGCGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTTTGCGTCCAGATCACCCGCGCTCTGCTTGCCAAT AAAGCATTTCCCGCCAAGACGCCTTAATATCCCTTTTATTTTTCTTCG TTTAGAATTTAGTTAGACGACGTACGATGTATAAGTGTAATTAAATGATAGTACATGCATATCTCTGGAAt ]
[+] EMBL CF298487 [ AGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCACCCGCACACTTCTCGCCAATAAAAGC TTACCCGCCAAGACGCCTTAATAT TCTTTTTTTTTCCTTCGTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTG TAAATGA ATTACATGC ATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF297886 [ CACACTTCTCGCCAATAAAAGC TTACCCGCCAAGACGCCTTAATAT TCTTTTTTTTTCCTTCGTTGATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTG TAAATGA ATGATATGC ATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCTTTGAAAAAA ]
consensusID : consensus_11167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[AGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCTGNGAAAGACGGCATCCACACCGACATCGCCGTCAGCTGGNAACTGGGCCCCCAATCCAAGCCCATAAGGCCATCCTTGTCAGTCTCTCTNTCTCTCAGTTTCAGCCCAATAGGCCGGCCTTCTTTTAGTTTGATTGGGCCCAATGAAACTAATTAGGCCCAGCTATATACAGGCGACCAGGTCGGAGGTGTTCCGCCACATNCTCGNCGGCGACGACG]
[+] EMBL OSC9821 [AGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCTGNGAAAGACGGCATCCACACCGACATCGCCGTCAGCTGGNAACTGGGCCCCCAATCCAAGCCCATAAGGCCATCCTTGTCAGTCTCTCTNTCTCTCAGTTTCAGCCCAATAGGCCGGCCTTCTTTTAGTTTGATTGGGCCCAATGAAACTAATTAGGCCCAGCTATATACAGGCGACCAGGTCGGAGGTGTTCCGCCACATNCTCGNCGGCGACGACG]
consensusID : consensus_11167#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence
[GTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTTTGCGTCCAGATCACCCGCGCTCTGCTTGCCAATAAAGCATTTCCCGCCAAGACGCCTTAATATCCCTTTTATTTTTCTTCGTTTAGAATTTAGTTAGACGACGTACGATGTATAAGTGTAATTAAATGATAGTACATGCATATCTCTGGAATTAAAAAAAAA]
[+] EMBL AU096938 [GTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTTTGCGTCCAGATCACCCGCGCTCTGCTTGCCAATAAAGCATTTCCCGCCAAGACGCCTTAATATCCCTTTTATTTTTCTTCGTTTAGAATTTAGTTAGACGACGTACGATGTATAAGTGTAATTAAATGATAGTACATGCATATCTCTGGAATTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11167#0 GTTGCTGTTCACGTCGTTGCCTAGCCACAAGGAGAAGGAAGAAGGAAAAGAAGGCAGAAG 60
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 GCAGCAGCAGGAGCAGCAGGAGAAGGAGAAGGCGAGAAGAAACAATGGATTGCTGCGTGT 120
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 GCAGTCCCATGGCGTCCATGTACAGGCTTCCAAGGAACGCCATCTGCGCTGCGTGCTATG 180
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 AAGGTGCCAAGGCCATCATCGCCTTCTTCAACGACGACGACGACGAGCACGCCGATGCTG 240
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 ATCAAGGCTCGGTGAAGCCCAGCAGATTGACAAAGCTCAATAGCACAATCAAGGGATTGA 300
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 GAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGACCAAGCAGAGGG 360
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 CATCGTTTCTCCAGGAAGGCTTCGCGGCGGCGTGGAAGGACGGCATCCACACCGACATCG 420
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 CCATCAGGCCTGGAACTGGGCCTCCAATCCAAGCCCACAAGGCCATCCTTGCGACCAGGT 480
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 CGGAGGTGTTCCGGCACATCCTCGCCGGCGACGACGACTGCAAGGCCCCCGCCGGCGACT 540
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 CTCTGTCGCTACCGGAGCTGACCCACGACGAGCTCTCCCACCTCCTCGCCTTCCTCTACA 600
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 CGGGCTCCCTGGCGACGTGCGCGGAGGAGCGGCACCTGCACGCGCTGCTGGTCGCCGGCG 660
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 ACAAGTACGACGTGCCGTTCCTCCGGCGAGCTTGCGAGGCGCGGCTGGCGGCGGGGGTGG 720
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ------------------------------------------------------------
consensus_11167#0 AGGCGGGCAACGTGCTGCGGACGCTGGAGGTGGCGGAGCTGAGCTCGAGCGCGGCGCTGA 780
consensus_11167#2 ------------------------------------------------------------
consensus_11167#1 ---AGGGATTGAGAGATGCGTGGGAGGAGGTGAAGCAGATGCGATGCAGAGAGGAGGAGA 57
consensus_11167#0 AGGAGCGCGCCATGGGGACGGTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGT 840
consensus_11167#2 ----------------------------------------------------------GT 2
consensus_11167#1 CCAAGCAGAGGGCATCGTTTCTCCAGCAAGGCTTCGCGGCGGCTGNGAAAGACGGCATCC 117
consensus_11167#0 ACGAGGAGTTCGCCGTCAG--GAACGCCGCCCTCTGCGTCCAGATCACCCGCACACTTCT 898
consensus_11167#2 ACGAGGAGTTCGCCGTCAG--GAACGCCGCCCTTTGCGTCCAGATCACCCGCGCTCTGCT 60
consensus_11167#1 ACACCGACATCGCCGTCAGCTGGNAACTGGGCCCCCAATCCAAGCCCATAAGGCCATCCT 177
** ** ********** * * * * **** * * * **
consensus_11167#0 CGCCAATAAAAGCTTACCCGCCAAGACGCCTTAATATTCT--TTTT-TTTTCCTTCGTTG 955
consensus_11167#2 TGCCAATAAAGCATTTCCCGCCAAGACGCCTTAATATCCC--TTTTATTTTTCTTCG--- 115
consensus_11167#1 TGTCAGTCTCTC-TNTCTCTCAGTTTCAGCCCAATAGGCCGGCCTTCTTTTAGTTTGATT 236
* ** * * * * * * * **** * ** **** ** *
consensus_11167#0 ATTTAGAATTTAGTTAGACGACGTGCGATGTATACGTGTAA----ATGATAG---TACAT 1008
consensus_11167#2 -TTTAGAATTTAGTTAGACGACGTACGATGTATAAGTGTAATTAAATGATAG---TACAT 171
consensus_11167#1 GGGCCCAATGAAACTAATTAGGCCCAGCTATATACAGGCGACCAGGTCGGAGGTGTTCCG 296
*** * ** * * **** * * * ** * *
consensus_11167#0 GCATCTCTGGAAGATTAATGTGATCAATATATGCAATTTATATTAGTTTCTTTGAAAAAA 1068
consensus_11167#2 GCATATCTCTGGAATTAAAAAAAAA----------------------------------- 196
consensus_11167#1 CCACATNCTCGNCGGCGACGACG------------------------------------- 319
** * *
consensus_11167#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1119
consensus_11167#2 ---------------------------------------------------
consensus_11167#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||