These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1456 fasta sequence [ATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTTGGATTGCTTTTGCATTTGCATATAAAGATACTACAATTTGATTGCAATAATCCATGATGATCGATGATCATGGGGGCGGCGGCGTGCTTGAGGCTTGAGCAAGCTACCTGTCCGTCATCTACTCTACTGTGTGCAGTGCATGCTATTCTCCTTGCCTACCTAACCTGATCAATTAGTACTTTACTTCCTTTATTATTCTTTCCTTCAGAAATTTGTGGTTAATTTGGATATGCTGTAAAATGGAAGGAATGCATTTGTGGTGGGTGCAGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAACTGGTTCGGGGGATTCTCCGTCCGCATGGAGGGCACGCCCGAGATGAACCGCTGCACAGCGCGCGTCGTCCAGGCCACCGGCCACTGCGGCGCCGCCATCCCCACCGCCCCTCGCGACCTCACCCTCGCCTTCCGCATGCTCGGCCTCGCCCTCTACACCGTCCCCCCACTCCTCTCCCAGCCGCTCCGTCCCATGGACTTCTGCCCATCTCCATTAACATCTCCATCTCTTCCCGCCCTCGCGCTCGCCCCCTCTCCGATTCCGACTCCAATCATCGCGCCGCCCCCCGTGTCCTCGCCGGCTCCCCCTCTCCCGCCCCTCTGGCGCCGCAGGCCTCGCCGCCTGCCGCCCATCTGGCGCCCGACCCCACCCTCGCTACCCGTTGACACCATGCCGCCGCCGCCGCCGCCACCGCCACCGCAGCCGCAGGGCTCCGCCTGCACCTTC-GACAAGTGGGCGGACG-TTGGA-TTG-CACGGG-TGCAA-CTGGAAGGTGGTGACGCCC--AACACGACGGTGGCCATGGCGTTCGG-CCCCG-CCGCGGCGCAG-AGGTACGGCCCCGACAT-GACGC-TGCGGGAGGCGCTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCTCAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCATCGACCACATCAACGCCGCCCTCCTCACCCCCACGCTCCACAAGCTTCTCCTCGAGGGTGCGCGCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACTAATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATA--AAAAAATACTACTACT] [+] EMBL AK106664 [ATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTTGGATTGCTTTTGCATTTGCATATAAAGATACTACAATTTGATTGCAATAATCCATGATGATCGATGATCATGGGGGCGGCGGCGTGCTTGAGGCTTGAGCAAGCTACCTGTCCGTCATCTACTCTACTGTGTGCAGTGCATGCTATTCTCCTTGCCTACCTAACCTGATCAATTAGTACTTTACTTCCTTTATTATTCTTTCCTTCAGAAATTTGTGGTTAATTTGGATATGCTGTAAAATGGAAGGAATGCATTTGTGGTGGGTGCAGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAACTGGTTCGGGGGATTCTCCGTCCGCATGGAGGGCACGCCCGAGATGAACCGCTGCACAGCGCGCGTCGTCCAGGCCACCGGCCACTGCGGCGCCGCCATCCCCACCGCCCCTCGCGACCTCACCCTCGCCTTCCGCATGCTCGGCCTCGCCCTCTACACCGTCCCCCCACTCCTCTCCCAGCCGCTCCGTCCCATGGACTTCTGCCCATCTCCATTAACATCTCCATCTCTTCCCGCCCTCGCGCTCGCCCCCTCTCCGATTCCGACTCCAATCATCGCGCCGCCCCCCGTGTCCTCGCCGGCTCCCCCTCTCCCGCCCCTCTGGCGCCGCAGGCCTCGCCGCCTGCCGCCCATCTGGCGCCCGACCCCACCCTCGCTACCCGTTGACACCATGCCGCCGCCGCCGCCGCCACCGCCACCGCAGCCGCAGGGCTCCGCCTGCACCTTC GACAAGTGGGCGGACG TTGGA TTG CACGGG TGCAA CTGGAAGGTGGTGACGCCC AACACGACGGTGGCCATGGCGTTCGG CCCCG CCGCGGCGCAG AGGTACGGCCCCGACAT GACGC TGCGGGAGGCGCTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCTCAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCATCGACCACATCAACGCCGCCCTCCTCACCCCCACGCTCCACAAGCTTCTCCTCGAGGGTGCGCGCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACTAATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATA CTACACTACTACTACT] [+] EMBL AU085963 [ caacttTTCNGACAATTGGGCGGACGTTTGGATTTGCCACGGGTTGCAANCTGGAAGGTGTTGACGCCCCAAACACGACGGTGGCCATGGCGTTCGGCCCCCGCCCGCGGCGCAGAAGGTNCGGCCCCGACATGGACGCTTGCGGGAGGCGCTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCTCAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCATCGACCACATCAACGCCGCCCTCCTNACCCCCACGNTCCACAAGCTTCTCCTCGAGGGTGCNCGCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACNTCACCCCNTGCAACTAATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTTG TACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATA AAAAAA ] [+] EMBL AU164161 [ CCG CCGCGGCGCAG AGGTACGGCCCCGACAT GACGC TGCGGGAGNCGNTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCTCAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCATCGACCACATCAACGCCGCCCTCCTCACCCCCACGCTCCACAAGCTTCTCCTCGAGGGTGCGCGCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACTAATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTANCCNGTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATA AAAAAA ] [-] EMBL CF328642 [ GTGCGCGCTTCCGCCTCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACTAATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATACTAAAAAAaaaaa ] consensusID : consensus_11170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 394 fasta sequence [GATAGATCATATCTAGCGTGGACGATGGCGAGGCATCGGTGGTATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAAC-TGGTTCGGGGGATTCTCCGTCCGCATGGA-GGGCANCGCCCG-AGATGAACCGTTGCACAGGGCGCGTCGTCCAGGCCACCGGCAANTTCGGCGCCG-CATTCCCACCGCCCTTGGGACCT] [+] EMBL AU197331 [GATAGATCATATCTAGCGTGGACGATGGCGAGGCATCGGTGGTATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAACTTGGTTCGGGGGATTCTCCGTCCGNATTGAGGGGCANCGCCCGAAGATGAACCGTTGCACAGGGCGCGTCGTCCAGGCCACCGGCAANTTCGGCGCCG CATTCCCACCGCCCTTGGGACCT] [+] EMBL AU164160 [GATAGATCATATCTAGCGTGGACGATGGCGAGGCATCGGTGGTATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACNGTGCGGGAGTGCAACACCAAC TGGTTCNGGGGATTCTCCGTCCGCATGGA GGGCA CGCCCG AGATGAACCGCTGCACAACGCGCGTCGTCCANGCCACCGGGCANTGCGGCGCCGNCATCCCCAACGCCCct ] [+] EMBL AU085962 [GATAGATCATATCTAGCGTGGACGATGGCGAGGCATCGGTGGTATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAAC TGGTTCGGGGGATTCTCCGTCCGCATGGA GGGCANGGCCCG A ] consensusID : consensus_11170#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [GGTGCGCGCTTCCGCCTCGCCAACTCCGACTCCACCTGCCCTGCCACCTACCCCCTGCAACTATACTACTCCTGCTTGCTTACTCATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACCTAATGTATTACTATGTCTCACTCATACTTAATTGGGGATGGATTTTAATACTAAAAAAAAAAAAAAAAAAAAAAACACTGTCTGCCGTTCGTAGCGTAT] [+] EMBL CF328641 [GGTGCGCGCTTCCGCCTCGCCAACTCCGACTCCACCTGCCCTGCCACCTACCCCCTGCAACTATACTACTCCTGCTTGCTTACTCATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACCTAATGTATTACTATGTCTCACTCATACTTAATTGGGGATGGATTTTAATACTAAAAAAAAAAAAAAAAAAAAAAACACTGTCTGCCGTTCGTAGCGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11170#0 ATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGC 60 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 CGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACC 120 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 AGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTTGGATTGCTTTTG 180 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 CATTTGCATATAAAGATACTACAATTTGATTGCAATAATCCATGATGATCGATGATCATG 240 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 GGGGCGGCGGCGTGCTTGAGGCTTGAGCAAGCTACCTGTCCGTCATCTACTCTACTGTGT 300 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 GCAGTGCATGCTATTCTCCTTGCCTACCTAACCTGATCAATTAGTACTTTACTTCCTTTA 360 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 TTATTCTTTCCTTCAGAAATTTGTGGTTAATTTGGATATGCTGTAAAATGGAAGGAATGC 420 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 ATTTGTGGTGGGTGCAGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGT 480 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 GACGGTGCGGGAGTGCAACACCAACTGGTTCGGGGGATTCTCCGTCCGCATGGAGGGCAC 540 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 GCCCGAGATGAACCGCTGCACAGCGCGCGTCGTCCAGGCCACCGGCCACTGCGGCGCCGC 600 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 CATCCCCACCGCCCCTCGCGACCTCACCCTCGCCTTCCGCATGCTCGGCCTCGCCCTCTA 660 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 CACCGTCCCCCCACTCCTCTCCCAGCCGCTCCGTCCCATGGACTTCTGCCCATCTCCATT 720 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 AACATCTCCATCTCTTCCCGCCCTCGCGCTCGCCCCCTCTCCGATTCCGACTCCAATCAT 780 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 CGCGCCGCCCCCCGTGTCCTCGCCGGCTCCCCCTCTCCCGCCCCTCTGGCGCCGCAGGCC 840 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 TCGCCGCCTGCCGCCCATCTGGCGCCCGACCCCACCCTCGCTACCCGTTGACACCATGCC 900 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 GCCGCCGCCGCCGCCACCGCCACCGCAGCCGCAGGGCTCCGCCTGCACCTTCGACAAGTG 960 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 GGCGGACGTTGGATTGCACGGGTGCAACTGGAAGGTGGTGACGCCCAACACGACGGTGGC 1020 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 CATGGCGTTCGGCCCCGCCGCGGCGCAGAGGTACGGCCCCGACATGACGCTGCGGGAGGC 1080 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ------------------------------------------------------------ consensus_11170#0 GCTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCT 1140 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 --------------------------GATAGATCATATCTAGCGTGGACGATGGCGAGGC 34 consensus_11170#0 CAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCAT 1200 consensus_11170#2 ------------------------------------------------------------ consensus_11170#1 ATCGGTGGTATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTG 94 consensus_11170#0 CGACCACATCAACGCCGCCCTCCTCACCCCCACGCTCCACAAGCTTCTCCTCGAGGGTGC 1260 consensus_11170#2 -------------------------------------------------------GGTGC 5 consensus_11170#1 CGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGT 154 **** consensus_11170#0 GC-GCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACT 1319 consensus_11170#2 GC-GCTTCCGCCTCGCCAACTCCGACTCCA-CCTGCCCTGCCACCT-ACCCCCTGCAACT 62 consensus_11170#1 TCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTGCGC 214 * ** ** * ** ** * *** * * *** * * * consensus_11170#0 AATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTC 1379 consensus_11170#2 A--TACTACTCCTGCTTGCTTACTC-ATCGCTAATGCACTCGTTTTTCATTTTATTACTC 119 consensus_11170#1 GGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCA 274 * ** * * * ** * * * ** consensus_11170#0 GCTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAAT 1439 consensus_11170#2 GCTAC-CTAATGTATTACTA-TGTCTC-ACTCA-TACTTAATTGG-GGATGGATTTTAAT 174 consensus_11170#1 ACTGGTTCGGGGGATTCTC--CGTCCGCATGGAGGGCANCGCCCG-AGATGAACCGTTGC 331 ** * *** *** * * * * **** * * consensus_11170#0 AAAAAAATACTACTACT------------------------------------------- 1456 consensus_11170#2 ACTAAAAAAAAAAAAAAAAAAAAAAACACTGTCTGC----CGTTCGTAGCGTAT------ 224 consensus_11170#1 ACAGGGCGCGTCGTCCAGGCCACCGGCAANTTCGGCGCCGCATTCCCACCGCCCTTGGGA 391 * consensus_11170#0 --- consensus_11170#2 --- consensus_11170#1 CCT 394 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||