cluster # 11170

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11170 cluster # 11170 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11170#0 length = 1456 sequences # 4

consensus_11170#1 length = 394 sequences # 3
consensus_11170#2 length = 224 sequences # 1

consensusID : consensus_11170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1456
fasta sequence

                              [ATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTTGGATTGCTTTTGCATTTGCATATAAAGATACTACAATTTGATTGCAATAATCCATGATGATCGATGATCATGGGGGCGGCGGCGTGCTTGAGGCTTGAGCAAGCTACCTGTCCGTCATCTACTCTACTGTGTGCAGTGCATGCTATTCTCCTTGCCTACCTAACCTGATCAATTAGTACTTTACTTCCTTTATTATTCTTTCCTTCAGAAATTTGTGGTTAATTTGGATATGCTGTAAAATGGAAGGAATGCATTTGTGGTGGGTGCAGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAACTGGTTCGGGGGATTCTCCGTCCGCATGGAGGGCACGCCCGAGATGAACCGCTGCACAGCGCGCGTCGTCCAGGCCACCGGCCACTGCGGCGCCGCCATCCCCACCGCCCCTCGCGACCTCACCCTCGCCTTCCGCATGCTCGGCCTCGCCCTCTACACCGTCCCCCCACTCCTCTCCCAGCCGCTCCGTCCCATGGACTTCTGCCCATCTCCATTAACATCTCCATCTCTTCCCGCCCTCGCGCTCGCCCCCTCTCCGATTCCGACTCCAATCATCGCGCCGCCCCCCGTGTCCTCGCCGGCTCCCCCTCTCCCGCCCCTCTGGCGCCGCAGGCCTCGCCGCCTGCCGCCCATCTGGCGCCCGACCCCACCCTCGCTACCCGTTGACACCATGCCGCCGCCGCCGCCGCCACCGCCACCGCAGCCGCAGGGCTCCGCCTGCACCTTC-GACAAGTGGGCGGACG-TTGGA-TTG-CACGGG-TGCAA-CTGGAAGGTGGTGACGCCC--AACACGACGGTGGCCATGGCGTTCGG-CCCCG-CCGCGGCGCAG-AGGTACGGCCCCGACAT-GACGC-TGCGGGAGGCGCTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCTCAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCATCGACCACATCAACGCCGCCCTCCTCACCCCCACGCTCCACAAGCTTCTCCTCGAGGGTGCGCGCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACTAATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATA--AAAAAATACTACTACT]

[+] EMBL AK106664             [ATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTTGGATTGCTTTTGCATTTGCATATAAAGATACTACAATTTGATTGCAATAATCCATGATGATCGATGATCATGGGGGCGGCGGCGTGCTTGAGGCTTGAGCAAGCTACCTGTCCGTCATCTACTCTACTGTGTGCAGTGCATGCTATTCTCCTTGCCTACCTAACCTGATCAATTAGTACTTTACTTCCTTTATTATTCTTTCCTTCAGAAATTTGTGGTTAATTTGGATATGCTGTAAAATGGAAGGAATGCATTTGTGGTGGGTGCAGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAACTGGTTCGGGGGATTCTCCGTCCGCATGGAGGGCACGCCCGAGATGAACCGCTGCACAGCGCGCGTCGTCCAGGCCACCGGCCACTGCGGCGCCGCCATCCCCACCGCCCCTCGCGACCTCACCCTCGCCTTCCGCATGCTCGGCCTCGCCCTCTACACCGTCCCCCCACTCCTCTCCCAGCCGCTCCGTCCCATGGACTTCTGCCCATCTCCATTAACATCTCCATCTCTTCCCGCCCTCGCGCTCGCCCCCTCTCCGATTCCGACTCCAATCATCGCGCCGCCCCCCGTGTCCTCGCCGGCTCCCCCTCTCCCGCCCCTCTGGCGCCGCAGGCCTCGCCGCCTGCCGCCCATCTGGCGCCCGACCCCACCCTCGCTACCCGTTGACACCATGCCGCCGCCGCCGCCGCCACCGCCACCGCAGCCGCAGGGCTCCGCCTGCACCTTC GACAAGTGGGCGGACG TTGGA TTG CACGGG TGCAA CTGGAAGGTGGTGACGCCC  AACACGACGGTGGCCATGGCGTTCGG CCCCG CCGCGGCGCAG AGGTACGGCCCCGACAT GACGC TGCGGGAGGCGCTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCTCAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCATCGACCACATCAACGCCGCCCTCCTCACCCCCACGCTCCACAAGCTTCTCCTCGAGGGTGCGCGCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACTAATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATA  CTACACTACTACTACT]
[+] EMBL AU085963             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               caacttTTCNGACAATTGGGCGGACGTTTGGATTTGCCACGGGTTGCAANCTGGAAGGTGTTGACGCCCCAAACACGACGGTGGCCATGGCGTTCGGCCCCCGCCCGCGGCGCAGAAGGTNCGGCCCCGACATGGACGCTTGCGGGAGGCGCTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCTCAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCATCGACCACATCAACGCCGCCCTCCTNACCCCCACGNTCCACAAGCTTCTCCTCGAGGGTGCNCGCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACNTCACCCCNTGCAACTAATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTTG TACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATA  AAAAAA          ]
[+] EMBL AU164161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCG CCGCGGCGCAG AGGTACGGCCCCGACAT GACGC TGCGGGAGNCGNTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCTCAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCATCGACCACATCAACGCCGCCCTCCTCACCCCCACGCTCCACAAGCTTCTCCTCGAGGGTGCGCGCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACTAATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTANCCNGTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATA  AAAAAA          ]
[-] EMBL CF328642             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTGCGCGCTTCCGCCTCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACTAATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATACTAAAAAAaaaaa     ]




>consensus_11170#0
ATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGC
CGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACC
AGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTTGGATTGCTTTTG
CATTTGCATATAAAGATACTACAATTTGATTGCAATAATCCATGATGATCGATGATCATG
GGGGCGGCGGCGTGCTTGAGGCTTGAGCAAGCTACCTGTCCGTCATCTACTCTACTGTGT
GCAGTGCATGCTATTCTCCTTGCCTACCTAACCTGATCAATTAGTACTTTACTTCCTTTA
TTATTCTTTCCTTCAGAAATTTGTGGTTAATTTGGATATGCTGTAAAATGGAAGGAATGC
ATTTGTGGTGGGTGCAGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGT
GACGGTGCGGGAGTGCAACACCAACTGGTTCGGGGGATTCTCCGTCCGCATGGAGGGCAC
GCCCGAGATGAACCGCTGCACAGCGCGCGTCGTCCAGGCCACCGGCCACTGCGGCGCCGC
CATCCCCACCGCCCCTCGCGACCTCACCCTCGCCTTCCGCATGCTCGGCCTCGCCCTCTA
CACCGTCCCCCCACTCCTCTCCCAGCCGCTCCGTCCCATGGACTTCTGCCCATCTCCATT
AACATCTCCATCTCTTCCCGCCCTCGCGCTCGCCCCCTCTCCGATTCCGACTCCAATCAT
CGCGCCGCCCCCCGTGTCCTCGCCGGCTCCCCCTCTCCCGCCCCTCTGGCGCCGCAGGCC
TCGCCGCCTGCCGCCCATCTGGCGCCCGACCCCACCCTCGCTACCCGTTGACACCATGCC
GCCGCCGCCGCCGCCACCGCCACCGCAGCCGCAGGGCTCCGCCTGCACCTTCGACAAGTG
GGCGGACGTTGGATTGCACGGGTGCAACTGGAAGGTGGTGACGCCCAACACGACGGTGGC
CATGGCGTTCGGCCCCGCCGCGGCGCAGAGGTACGGCCCCGACATGACGCTGCGGGAGGC
GCTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCT
CAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCAT
CGACCACATCAACGCCGCCCTCCTCACCCCCACGCTCCACAAGCTTCTCCTCGAGGGTGC
GCGCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACTA
ATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTCG
CTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAATA
AAAAAATACTACTACT

consensusID : consensus_11170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 394
fasta sequence

                              [GATAGATCATATCTAGCGTGGACGATGGCGAGGCATCGGTGGTATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAAC-TGGTTCGGGGGATTCTCCGTCCGCATGGA-GGGCANCGCCCG-AGATGAACCGTTGCACAGGGCGCGTCGTCCAGGCCACCGGCAANTTCGGCGCCG-CATTCCCACCGCCCTTGGGACCT]

[+] EMBL AU197331             [GATAGATCATATCTAGCGTGGACGATGGCGAGGCATCGGTGGTATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAACTTGGTTCGGGGGATTCTCCGTCCGNATTGAGGGGCANCGCCCGAAGATGAACCGTTGCACAGGGCGCGTCGTCCAGGCCACCGGCAANTTCGGCGCCG CATTCCCACCGCCCTTGGGACCT]
[+] EMBL AU164160             [GATAGATCATATCTAGCGTGGACGATGGCGAGGCATCGGTGGTATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACNGTGCGGGAGTGCAACACCAAC TGGTTCNGGGGATTCTCCGTCCGCATGGA GGGCA CGCCCG AGATGAACCGCTGCACAACGCGCGTCGTCCANGCCACCGGGCANTGCGGCGCCGNCATCCCCAACGCCCct       ]
[+] EMBL AU085962             [GATAGATCATATCTAGCGTGGACGATGGCGAGGCATCGGTGGTATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAAC TGGTTCGGGGGATTCTCCGTCCGCATGGA GGGCANGGCCCG A                                                                             ]




>consensus_11170#1
GATAGATCATATCTAGCGTGGACGATGGCGAGGCATCGGTGGTATGTGCAGGCGGTGGCG
CTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGCCGACGACGACGAGGAGC
AGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACCAGTGCAAGGACGGCGCC
AGAGGCCTCTTCGACTACCCGCTCTACGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGG
GAGAGCCCGGTGACGGTGCGGGAGTGCAACACCAACTGGTTCGGGGGATTCTCCGTCCGC
ATGGAGGGCANCGCCCGAGATGAACCGTTGCACAGGGCGCGTCGTCCAGGCCACCGGCAA
NTTCGGCGCCGCATTCCCACCGCCCTTGGGACCT

consensusID : consensus_11170#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [GGTGCGCGCTTCCGCCTCGCCAACTCCGACTCCACCTGCCCTGCCACCTACCCCCTGCAACTATACTACTCCTGCTTGCTTACTCATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACCTAATGTATTACTATGTCTCACTCATACTTAATTGGGGATGGATTTTAATACTAAAAAAAAAAAAAAAAAAAAAAACACTGTCTGCCGTTCGTAGCGTAT]

[+] EMBL CF328641             [GGTGCGCGCTTCCGCCTCGCCAACTCCGACTCCACCTGCCCTGCCACCTACCCCCTGCAACTATACTACTCCTGCTTGCTTACTCATCGCTAATGCACTCGTTTTTCATTTTATTACTCGCTACCTAATGTATTACTATGTCTCACTCATACTTAATTGGGGATGGATTTTAATACTAAAAAAAAAAAAAAAAAAAAAAACACTGTCTGCCGTTCGTAGCGTAT]




>consensus_11170#2
GGTGCGCGCTTCCGCCTCGCCAACTCCGACTCCACCTGCCCTGCCACCTACCCCCTGCAA
CTATACTACTCCTGCTTGCTTACTCATCGCTAATGCACTCGTTTTTCATTTTATTACTCG
CTACCTAATGTATTACTATGTCTCACTCATACTTAATTGGGGATGGATTTTAATACTAAA
AAAAAAAAAAAAAAAAAAAACACTGTCTGCCGTTCGTAGCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11170#0      ATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTGCGGCGCCGC 60
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      CGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGTTCTGCGACC 120
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      AGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTTGGATTGCTTTTG 180
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      CATTTGCATATAAAGATACTACAATTTGATTGCAATAATCCATGATGATCGATGATCATG 240
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      GGGGCGGCGGCGTGCTTGAGGCTTGAGCAAGCTACCTGTCCGTCATCTACTCTACTGTGT 300
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      GCAGTGCATGCTATTCTCCTTGCCTACCTAACCTGATCAATTAGTACTTTACTTCCTTTA 360
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      TTATTCTTTCCTTCAGAAATTTGTGGTTAATTTGGATATGCTGTAAAATGGAAGGAATGC 420
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      ATTTGTGGTGGGTGCAGGTGCGCGGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGT 480
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      GACGGTGCGGGAGTGCAACACCAACTGGTTCGGGGGATTCTCCGTCCGCATGGAGGGCAC 540
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      GCCCGAGATGAACCGCTGCACAGCGCGCGTCGTCCAGGCCACCGGCCACTGCGGCGCCGC 600
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      CATCCCCACCGCCCCTCGCGACCTCACCCTCGCCTTCCGCATGCTCGGCCTCGCCCTCTA 660
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      CACCGTCCCCCCACTCCTCTCCCAGCCGCTCCGTCCCATGGACTTCTGCCCATCTCCATT 720
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      AACATCTCCATCTCTTCCCGCCCTCGCGCTCGCCCCCTCTCCGATTCCGACTCCAATCAT 780
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      CGCGCCGCCCCCCGTGTCCTCGCCGGCTCCCCCTCTCCCGCCCCTCTGGCGCCGCAGGCC 840
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      TCGCCGCCTGCCGCCCATCTGGCGCCCGACCCCACCCTCGCTACCCGTTGACACCATGCC 900
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      GCCGCCGCCGCCGCCACCGCCACCGCAGCCGCAGGGCTCCGCCTGCACCTTCGACAAGTG 960
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      GGCGGACGTTGGATTGCACGGGTGCAACTGGAAGGTGGTGACGCCCAACACGACGGTGGC 1020
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      CATGGCGTTCGGCCCCGCCGCGGCGCAGAGGTACGGCCCCGACATGACGCTGCGGGAGGC 1080
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ------------------------------------------------------------
                                                                                   

consensus_11170#0      GCTGGACGGGAGGGGAGACATGTACCGGACGCTGCTGCGGGAGGCCACGGCGGCGCTCCT 1140
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      --------------------------GATAGATCATATCTAGCGTGGACGATGGCGAGGC 34
                                                                                   

consensus_11170#0      CAATGCCTACTACAACCCCAGTGGCTCCGGCTTCCTGTACCCCACCACCGCCAGCGTCAT 1200
consensus_11170#2      ------------------------------------------------------------
consensus_11170#1      ATCGGTGGTATGTGCAGGCGGTGGCGCTGCTGGTGGTGCTGAAGGCGGCGGCAGGGTCTG 94
                                                                                   

consensus_11170#0      CGACCACATCAACGCCGCCCTCCTCACCCCCACGCTCCACAAGCTTCTCCTCGAGGGTGC 1260
consensus_11170#2      -------------------------------------------------------GGTGC 5
consensus_11170#1      CGGCGCCGCCGACGACGACGAGGAGCAGGAGCAGCAGCACGGTGGTGGCCGGGATGGTGT 154
                                                                              **** 

consensus_11170#0      GC-GCTTCCGCCGCGCCAACTCCGACTCCAACCTGCCCTGCCACCTCACCCCCTGCAACT 1319
consensus_11170#2      GC-GCTTCCGCCTCGCCAACTCCGACTCCA-CCTGCCCTGCCACCT-ACCCCCTGCAACT 62
consensus_11170#1      TCTGCGACCAGTGCAAGGACGGCGCCAGAGGCCTCTTCGACTACCCGCTCTACGGTGCGC 214
                        * **  **    *    **  ** *     ***   *  * ***    *  * *     

consensus_11170#0      AATTACTACTCCTGCTTGCTTACTCGATCGCTAATGCACTCGTTTTTCATTTTATTACTC 1379
consensus_11170#2      A--TACTACTCCTGCTTGCTTACTC-ATCGCTAATGCACTCGTTTTTCATTTTATTACTC 119
consensus_11170#1      GGGTGGCGATCGAGTGCGGCGGAGGGGAGAGCCCGGTGACGGTGCGGGAGTGCAACACCA 274
                          *     **  *   *                 *     **     * *  *  **  

consensus_11170#0      GCTACGCTAATGTATTACTAGTGTCTCGACTCAATACTTAATTGGTGGATGGATTTTAAT 1439
consensus_11170#2      GCTAC-CTAATGTATTACTA-TGTCTC-ACTCA-TACTTAATTGG-GGATGGATTTTAAT 174
consensus_11170#1      ACTGGTTCGGGGGATTCTC--CGTCCGCATGGAGGGCANCGCCCG-AGATGAACCGTTGC 331
                        **        * ***      ***   *   *   *       *  **** *   *   

consensus_11170#0      AAAAAAATACTACTACT------------------------------------------- 1456
consensus_11170#2      ACTAAAAAAAAAAAAAAAAAAAAAAACACTGTCTGC----CGTTCGTAGCGTAT------ 224
consensus_11170#1      ACAGGGCGCGTCGTCCAGGCCACCGGCAANTTCGGCGCCGCATTCCCACCGCCCTTGGGA 391
                       *                                                           

consensus_11170#0      ---
consensus_11170#2      ---
consensus_11170#1      CCT 394