These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 681 fasta sequence [GTCGTCTCCTCCTCCGTTCGCCGTCTCCTCCCCC-AACTCGCGC-CCGGCGG-GAGCAA-GCGAAGCGAAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGT-G-ATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTAAAAAAAAAAA] [+] EMBL OSC18432 [GTCGTCTCCTCCTCCGTTCGCCGTCTCCTCCCCC AACTCGCGCGCCGGCGG GAGCAAGGCNAAG GATGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTNGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGA ] [+] EMBL C26916 [ CCGTCTCCTCCCCC AACTCGCGCGCCGGCGG GAGCAA GCAAAGANAGGTCCCCGTGTAGCTCCCGGTTTGGTTCNACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCNATTGGGGAGGGATTAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCA ] [+] EMBL C96988 [ TCTTCCCCCAAANTCGCGC CCGGCGGCGAGCAA GCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGT G ATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTAAAAAAAAAAA] [+] EMBL CA758827 [ GCGGCGAGCAA GCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACANAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACNAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGT GNATTACAGTTC ACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAAT ACATGCANACT ] [+] EMBL C99503 [ CCCCCACTTAGAGGTGGTGACAGAGTTANTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCAGTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGG ATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTcctt ] consensusID : consensus_11171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [CAGGAATTCGGCACGAGGCGCGCCGGCGGCGAGCAAGGTAAGGACTGATCGATTGGCTTGGGCCGCTTGCATCCTCGTCTTCCTCATCCGGGGTCTCCGAATTTCCGCGTGCAGCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAACGCCCCAGGACATACTATTGCAAGCTACCACGCTAAGGGATTCTCTGGGCAAGAAAGTGGTGAAGCTTGAAACCACACACGTTACAAAGCGCCCCCATTGGTTTAGGAACATTGACCACAAAACTGGAGATGTGATCATGT] [+] EMBL BE039192 [CAGGAATTCGGCACGAGGCGCGCCGGCGGCGAGCAAGGTAAGGACTGATCGATTGGCTTGGGCCGCTTGCATCCTCGTCTTCCTCATCCGGGGTCTCCGAATTTCCGCGTGCAGCGAAGCGGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCTGAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAGCAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAACGCCCCAGGACATACTATTGCAAGCTACCACGCTAAGGGATTCTCTGGGCAAGAAAGTGGTGAAGCTTGAAACCACACACGTTACAAAGCGCCCCCATTGGTTTAGGAACATTGACCACAAAACTGGAGATGTGATCATGT] consensusID : consensus_11171#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence [CACATCTTCCAGCTTGTTAAGGAAAAGGACCCCCGACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACACGCATCCTAACCTGAAGGGCATTTTACCATAGAATCATAATGAGCGAGATTGCTTTGTGTCCTGAAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAACGCTGAGAACCAGACACGTAAC-AAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAGCTGAAGATGTGATCATGTGAGTTGACCACGATTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATGTGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGC-AACTTGGGTGTTCCTTGTTGTAAAAAAAA] [+] EMBL BI796766 [CACATCTTCCAGCTTGTTAAGGAAAAGGACCCCCGACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACACGCATCCTAACCTGAAGGGCATTTTACCATAGAATCATAATGAGCGAGATTGCTTTGTGTCCTGAAAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAACGCTGAGAACCAGACACGTAAC AAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAGCTGAAGATGTGATCATGTGAGTTGACCACGATTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATGTGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGC AACTTGGGTGTTCCTTGTTGTAAAAAAAA] [+] EMBL C99504 [ gaACCCCCCACTTAGAGNTGGTGACAGAGTTAGTCCGTGGACA GCANCCTAACCTGAAGGGCA TTTA CA AAAATCATAATGAGCGAG TTG TTTGTGTCC G AAATTTAGCGCCCGAGGACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAA GCTGAGAACCAGACACGTAACAAAGCGCCCCAGTGTTCAGGGAACATGGACGACAGAACTGAAGATGTGATCATGTGAGTTGACCA G TTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGTCGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACTCACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAATAACATGCAAACTTGGGTGTTCCTTGTTGTAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11171#0 ---------------------------------------------------------GTC 3 consensus_11171#2 ------------------------------------------------------------ consensus_11171#1 CAGGAATTCGGCACGAGGCGCGCCGGCGGCGAGCAAGGTAAGGACTGATCGATTGGCTTG 60 consensus_11171#0 GTCTCCTCCTCCGTTCGCCGTCTCCTCCCCCAACTCGCGCCCGGCGGGAGCAAGCGAAGC 63 consensus_11171#2 ------------------------------------------------------------ consensus_11171#1 GGCCGCTTGCATCCTCGTCTTCCTCATCCGGGGTCTCCGAATTTCCGCGTGCAGCGAAGC 120 consensus_11171#0 GAAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCT 123 consensus_11171#2 ------------------------------------------------------------ consensus_11171#1 GGAGTCCCCGTGTAGCTCCCGGTTTGGATCGACCCCGGCGGCGGCGGCAGGGATGGCGCT 180 consensus_11171#0 GAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAG 183 consensus_11171#2 ------------------------------------------------------------ consensus_11171#1 GAGGGGCGTTTGGCAGCTGCAGAAGCTCGTGGTGAACTACTGCGATTGGGGAGGGAGCAG 240 consensus_11171#0 CAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTT-TTAAGGAAAAGAACCCCC 242 consensus_11171#2 --------------------------CACATCTTCCAGCTTGTTAAGGAAAAGGACCCCC 34 consensus_11171#1 CAGGGGGATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTT-TTAAGGAAAAGAACCCCC 299 * ************* *********** ****** consensus_11171#0 -ACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACA-GCATCCTAACCTGAAGGGCATTT- 299 consensus_11171#2 GACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACACGCATCCTAACCTGAAGGGCATTTT 94 consensus_11171#1 -ACTTAGAGGTGGTGACAGAGTTAGTCCGTGGACA-GCATCCTAACCTGAAGGGCATTT- 356 ********************************** *********************** consensus_11171#0 ACAA--AAATCATAATGAGCGAG-TTG-TTTGTGTCC--GAAATTTAGCGCCCGAGGACA 353 consensus_11171#2 ACCATAGAATCATAATGAGCGAGATTGCTTTGTGTCCTGAAAATTTAGCGCCCGAGGACA 154 consensus_11171#1 ACAA--AAATCATAATGAGCGAG-TTG-TTTGTGTCC--GAAATTTAACGCCCCAGGACA 410 ** * **************** *** ********* ******* ***** ****** consensus_11171#0 TACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAA-GCTGAGA 412 consensus_11171#2 TACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAACGCTGAGA 214 consensus_11171#1 TACTATTGCAAGCTACCACGCTAAGGGATTCTCTGGGCAAGAAAGTGGTGAA-GCTTGAA 469 ****************** ******* ************ ************ *** * consensus_11171#0 ACCAGACACGTAACAAAGCGCCCC-AGTGTTCAGGGAACATGGACGACAGAACTGAAGAT 471 consensus_11171#2 ACCAGACACGTAACAA-GCGCCCC-AGTGTTCAGGGAACATGGACGACAGAGCTGAAGAT 272 consensus_11171#1 ACCACACACGTTACAAAGCGCCCCCATTGGTTTAGGAACATTGACCACAAAACTGGAGAT 529 **** ****** **** ******* * ** * ******* *** *** * *** **** consensus_11171#0 GTGATCATGTGAGTTGACCA--GTTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGT 529 consensus_11171#2 GTGATCATGTGAGTTGACCACGATTGGGTTCTCAGACAAGCTGCTGATGTTCTTTGATGT 332 consensus_11171#1 GTGATCATGT-------------------------------------------------- 539 ********** consensus_11171#0 CGTGATTGCAGAACTGTTTTCATATGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACT 589 consensus_11171#2 CGTGATTGCAGAACTGTTTTCATGTGCGTGTCAAGAATTAGTCAGTGCAGCTATTCGACT 392 consensus_11171#1 ------------------------------------------------------------ consensus_11171#0 CACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAA 649 consensus_11171#2 CACCTTTTTTTAGTGATTACAGTTCAACTTTGTCTTTTTGTTTCGTCCGGTATCTGATAA 452 consensus_11171#1 ------------------------------------------------------------ consensus_11171#0 TAACATGCAAACTTGGGTGTTA------AAAAAAAAAA 681 consensus_11171#2 TAACATGCAA-CTTGGGTGTTCCTTGTTGTAAAAAAAA 489 consensus_11171#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||