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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11189#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1067 fasta sequence
[AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGC-TCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGCCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGG--ATATATATATATATGGCATTTAGTAGTGAAAAAAACGAGTTAAAAAA]
[+] EMBL AK103636 [AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGC TCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGCCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGCGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGG ATATATATATATATGGCA ]
[+] EMBL CF327566 [AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGC TCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGGCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTG ]
[+] EMBL OSS4908A [ TCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGCTTAGTAGCTTGAGCTCCATCGGTTTTGGTTGAGCTCCTGCTTCAGCTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTNACTCAGCACTTAGGCAGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTCGCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTACGTGCTTCGACCTGGGGTTCGTCCACCCACAACACGNTGCCCATGCTTNCCTTCTATGGGAGCGGNGAGCGCAATGCCTACCTTTGCCCCTG ]
[+] EMBL AU088727 [ ACTTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAGCGNCGAGCGCCATGCCTACCTTGCCCCNTGCAGAACATCATCGCCACAGCCGCACGGCCACACCTACCACCGCACACTCGTGGCCTCTATATATCGCTC CANNTTCGCTGACAACATCGATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGG ATATATATATATATGGCATTTAGTAGTGAAAAAAA ]
[-] EMBL CF327567 [ TGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATCGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATTAGGATATATATATATATATGGCATTTAGTAGTGATCTTTGCGAGTTAAAAAA]
[+] EMBL CB686046 [ CACCCTTGAGGTTTCTGCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTGGGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGGCGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGGAGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTAGCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCTAAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAACTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTT ]
consensusID : consensus_11189#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 258 fasta sequence
[CGAGATGGCTCAAACNRATGGK-TACTTTGTCCGTTGCAGGTTGAGCTCCTRCTDCAGMTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTGWCTCAGCACTKAGGCAGTGAAGGGKATGGMGCGCAGGTACAGTACGAGGCGACGCTGGCRTACTSGGGHACASTCGCGGGGKGC]
[+] EMBL AA754301 [CGAGATGGCTCAAACNRATGGK TACTTTGTCCGTTGCAGGTTGAGCTCCTRCTDCAGMTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTGWCTCAGCACTKAGGCAGTGAAGGGKATGGMGCGCAGGTACAGTACGAGGCGACGCTGGCRTACTSGGGHACASTCGCGGGGKGC]
[+] EMBL AA754336 [CGAGATGGCTCAAACNRATGGKTTACTTTGTCCGTTGCAGGTTGAGCTCCTGCTDCAGMTTGCCTCATGCCAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTACTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11189#0 AAATTACATCTCCTACACCAATTTTTTTTCCTGTATGTTCTTCCGCATGTGCTAGCTAGC 60
consensus_11189#1 ---------------------------------------------------CGAGATGGC 9
* ** * **
consensus_11189#0 TTAGTAGCTTGAG--CTCCATCGGTTTT-GGTTGAGCTCCTGCTTCAGCTTGCCTCATGC 117
consensus_11189#1 TCAAACNRATGGKTACTTTGTCCGTTGCAGGTTGAGCTCCTRCTDCAGMTTGCCTCATGC 69
* * ** ** ** *** ************ ** *** ***********
consensus_11189#0 CAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTA 177
consensus_11189#1 CAGCATGCGCATGGTGCGGTCTGCTGCTCATGTGTTCTCTTCTTTCCAACATTTATCCTA 129
************************************************************
consensus_11189#0 CTCGTTGCTCCTTAAGGTACGTACTGGGGCAGCGTGATGCCCGTGACTCAGCACTTAGGC 237
consensus_11189#1 CTCGTTGCTCCTTAAGGTACGTACTGTGGCAGCGTGATGCCCGTGWCTCAGCACTKAGGC 189
************************** ****************** ********* ****
consensus_11189#0 AGTGAAGGGGATGGAGCGCAGGTGCAGTACGAGGCGACGCTGGCGTACTCGGGTGCAGTC 297
consensus_11189#1 AGTGAAGGGKATGGMGCGCAGGTACAGTACGAGGCGACGCTGGCRTACTSGGGHACASTC 249
********* **** ******** ******************** **** *** ** **
consensus_11189#0 GCGGGGGTGACGATCGAGGAACTAGCTGGCCGGACATCGTCATGGTCTTCGGTCTCCTAC 357
consensus_11189#1 GCGGGGKGC--------------------------------------------------- 258
******
consensus_11189#0 GTGCTCGACCTGGGGTTCGTCCACCCACACCACGCTGCCCATGCTTGCCTTCTATGGGAG 417
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 CGGCGAGCGCCATGCCTACCTTGCCCCCTGCAGAACATCATCGCCACAGCCGCACGGCCA 477
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 CACCTACCACCGCACACTCGTGGCCTCTATATATCGCTCACAGCTTCGCTGACAACATCG 537
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 ATCTGCATCTCATGTATGAGTGGATGTGTGCCATGCTGCCATAGCACCAAGGAGGTTTCT 597
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 GCGACCGCATTTGAGGATTTAAATGAAGCACATTCTAGAAGGCCAGAACAAGGTAAGGTG 657
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 GGTGAGTTGGGTCACGTCCCAGGATCGGAGGACCAGGGACGCGAAGCGTGAGTGGCAGGG 717
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 CGCCGACGTCGAGGTCTCCAACAGTACGGTATTGCTCCAATGAGCAGTTGGGACCTTGGG 777
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 AGCTGGGGTTATTGCCGCGAGGATGGTGCTTCTCTTTGTGTTGACTGTTGACAACGACTA 837
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 GCCATCGGATTTGGATTCTGGAGGTAGTCTTTAGCATTTTCAAATTTTCCGATTGTACCT 897
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 AAGTATCTCTATGTAATTGGGAGTGTGCCAACGTCATATACAGTTGAGCACTAAACCTAA 957
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 CTTTACACTTATATACTTTTTGTTCAATTGTTATATGGCATTGTATACAAATGTTTAATT 1017
consensus_11189#1 ------------------------------------------------------------
consensus_11189#0 AGGATATATATATATATGGCATTTAGTAGTGAAAAAAACGAGTTAAAAAA 1067
consensus_11189#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||