cluster # 1120

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Oryza sativa
cluster # 1120 cluster # 1120 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1120#0 length = 432 sequences # 1

consensus_1120#1 length = 170 sequences # 1

consensusID : consensus_1120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [CCAAGAGACGAGATGCACACAGTGGGAGAACTCATCCACACCCTTTTTNTTCATCCCGACATCGTAGATCCTGATCTTGGGGTCAGGGACACCACGGCAGTACCTTGACTTGGGGTACGGCTTGTTCTTGATCTGGCGATAGCACCTTGCAGGTCTCCTCCCCATGGCGGCGGCGGCGTGCGCGCGGCGGACGGCGGCGGGAANAGGCGGGGACTCCGGCGGGAACTGGAGGAACTGATTGGTGGGGCCCATCGTGGCCAGTTATCCTTAGCTATCCGTGTCAGAATCATNTTATCATCGAGTCGAGTCGTTATCGTGTCCAGTGGCTCTCTCGAGTCGAGAAGCCCTCTATCCATCCATCCAGTGTTAGGTGTTNTTNGTCCGTGATGTTACCATGAATTGAGTTCCGCTTTGGTTATGGTGTTTGAAAAA]

[+] EMBL AU222860             [CCAAGAGACGAGATGCACACAGTGGGAGAACTCATCCACACCCTTTTTNTTCATCCCGACATCGTAGATCCTGATCTTGGGGTCAGGGACACCACGGCAGTACCTTGACTTGGGGTACGGCTTGTTCTTGATCTGGCGATAGCACCTTGCAGGTCTCCTCCCCATGGCGGCGGCGGCGTGCGCGCGGCGGACGGCGGCGGGAANAGGCGGGGACTCCGGCGGGAACTGGAGGAACTGATTGGTGGGGCCCATCGTGGCCAGTTATCCTTAGCTATCCGTGTCAGAATCATNTTATCATCGAGTCGAGTCGTTATCGTGTCCAGTGGCTCTCTCGAGTCGAGAAGCCCTCTATCCATCCATCCAGTGTTAGGTGTTNTTNGTCCGTGATGTTACCATGAATTGAGTTCCGCTTTGGTTATGGTGTTTGAAAAA]




>consensus_1120#0
CCAAGAGACGAGATGCACACAGTGGGAGAACTCATCCACACCCTTTTTNTTCATCCCGAC
ATCGTAGATCCTGATCTTGGGGTCAGGGACACCACGGCAGTACCTTGACTTGGGGTACGG
CTTGTTCTTGATCTGGCGATAGCACCTTGCAGGTCTCCTCCCCATGGCGGCGGCGGCGTG
CGCGCGGCGGACGGCGGCGGGAANAGGCGGGGACTCCGGCGGGAACTGGAGGAACTGATT
GGTGGGGCCCATCGTGGCCAGTTATCCTTAGCTATCCGTGTCAGAATCATNTTATCATCG
AGTCGAGTCGTTATCGTGTCCAGTGGCTCTCTCGAGTCGAGAAGCCCTCTATCCATCCAT
CCAGTGTTAGGTGTTNTTNGTCCGTGATGTTACCATGAATTGAGTTCCGCTTTGGTTATG
GTGTTTGAAAAA

consensusID : consensus_1120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 170
fasta sequence

                              [ATCATCGGGTCGAGTCGTTATCGTGTCCAGTGGCTCTCTCGAGTCGAGAAGCCCTCTATCCATCCATCCAGTGTTAGGTGTTCTTCGTCCGTGATGTTACCATGAATTGAGTTCGCTTTGGTTAAAAAAAAAAAAAAAAAAAAACACTGTTTTGCCGTTACGTAGCGTAT]

[+] EMBL CF330419             [ATCATCGGGTCGAGTCGTTATCGTGTCCAGTGGCTCTCTCGAGTCGAGAAGCCCTCTATCCATCCATCCAGTGTTAGGTGTTCTTCGTCCGTGATGTTACCATGAATTGAGTTCGCTTTGGTTAAAAAAAAAAAAAAAAAAAAACACTGTTTTGCCGTTACGTAGCGTAT]




>consensus_1120#1
ATCATCGGGTCGAGTCGTTATCGTGTCCAGTGGCTCTCTCGAGTCGAGAAGCCCTCTATC
CATCCATCCAGTGTTAGGTGTTCTTCGTCCGTGATGTTACCATGAATTGAGTTCGCTTTG
GTTAAAAAAAAAAAAAAAAAAAAACACTGTTTTGCCGTTACGTAGCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1120#0      CCAAGAGACGAGATGCACACAGTGGGAGAACTCATCCACACCCTTTTTNTTCATCCCGAC 60
consensus_1120#1      ------------------------------------------------------------
                                                                                  

consensus_1120#0      ATCGTAGATCCTGATCTTGGGGTCAGGGACACCACGGCAGTACCTTGACTTGGGGTACGG 120
consensus_1120#1      ------------------------------------------------------------
                                                                                  

consensus_1120#0      CTTGTTCTTGATCTGGCGATAGCACCTTGCAGGTCTCCTCCCCATGGCGGCGGCGGCGTG 180
consensus_1120#1      ------------------------------------------------------------
                                                                                  

consensus_1120#0      CGCGCGGCGGACGGCGGCGGGAANAGGCGGGGACTCCGGCGGGAACTGGAGGAACTGATT 240
consensus_1120#1      ------------------------------------------------------------
                                                                                  

consensus_1120#0      GGTGGGGCCCATCGTGGCCAGTTATCCTTAGCTATCCGTGTCAGAATCATNTTATCATCG 300
consensus_1120#1      -----------------------------------------------------ATCATCG 7
                                                                           *******

consensus_1120#0      AGTCGAGTCGTTATCGTGTCCAGTGGCTCTCTCGAGTCGAGAAGCCCTCTATCCATCCAT 360
consensus_1120#1      GGTCGAGTCGTTATCGTGTCCAGTGGCTCTCTCGAGTCGAGAAGCCCTCTATCCATCCAT 67
                       ***********************************************************

consensus_1120#0      CCAGTGTTAGGTGTTNTTNGTCCGTGATGTTACCATGAATTGAGTTCCGCTTTGGTTATG 420
consensus_1120#1      CCAGTGTTAGGTGTTCTTCGTCCGTGATGTTACCATGAATTGAGTTC-GCTTTGGTTAAA 126
                      *************** ** **************************** **********  

consensus_1120#0      GTGTTTGAAAAA-------------------------------- 432
consensus_1120#1      AAAAAAAAAAAAAAAAAACACTGTTTTGCCGTTACGTAGCGTAT 170
                             *****