These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 840 fasta sequence [ATATTTTCCCACGCATCCGTCTCCTCCTCGCGGAATAATAACCTTTTTTTTTCTTTTTCCAAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTAGCAATTCGCATC-GCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCCGGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT] [+] EMBL AK066250 [ATATTTTCCCACGCATCCGTCTCCTCCTCGCGGAATAATAACCTTTTTTTTTCTTTTTCCAAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTAGCAATTCGCATC GCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCCGGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCGCACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT] [+] EMBL AK104186 [ TAATAACCTTTTTTTTTCTTTTTCCAAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTAGCAATTCGCATC GCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCCGGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT] [+] EMBL AK069897 [ ATAACCTTTTTTTTTCTTTTTCCAAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTAGCAATTCGCATC GCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCCGGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT] [+] EMBL AU172455 [ CTTTTTCCAAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCCAATTCGATGCAGCCGCGGTAGCAATTCGCATCAGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTT ] consensusID : consensus_11204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 761 fasta sequence [TCGGCTTTGTTGGCCTACTGGAATTCGATGCAGCCGCGGTAGCAATTCGCATCGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGA--TTTCATGCAGGAGATGCTGGTGATGATGGA-TAACGTGAAAAACGAGAA-G-CCGGACACACTCGAGGACCTGCAG-AAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGG-CGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCG-CAGGTGACCGGCGCG-CCGGTGTACGAGACGTGCACACGCCTCTAAGTGATG-AAAAGAGAGACAAGCAGAAG-AAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT] [+] EMBL AK059801 [TCGGCTTTGTTGGCCTACTGGAATTCGATGCAGCCGCGGTAGCAATTCGCATCGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGA TTTCATGCAGGAGATGCTGGTGATGATGGA TAACGTGAAAAACGAGAA G CCGGACACACTCGAGGACCTGCAG AAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGG CGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCG CAGGTGACCGGCGCG CCGGTGTACGAGACGTGCACACGCCTCTAAGTGATG AAAAGAGAGACAAGCAGAAG AAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT] [+] EMBL CF325678 [ GCCGCCCCCGCCACCGCACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGCGTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGTGCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCCCGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAAGGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGATTTCTCCGA TTTCATGCAGGAGATGCTGGTGATGATGGA TAACGTGAAAAACGAGAA G CCGGACACACTCGAGGACCTGCAG AAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGCGG CGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCC ] [+] EMBL BM037870 [ CCGAATTTTCATGCAGGAGATGCTGGTGATGATGGANTAACGTGANATACGAGAATGCCCGGACACACTCGAGGACCTGCAGAAAGATGCTGCAA ACATCGTCAGCGGCGACGGCGGAAGCCGCGGCCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCG CAGGTGACCGGCGCG CCGGTGTACGAGACGTGCACACGCCTCTAAGTGATG AAAAGAGAGACAAGCAGAAG AAGAGAGGAAGCAAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCC ] [+] EMBL BM038203 [ gtGCCGCGT CCGTCGGTCGGCACACGGAGGACGCGCTTCGCGCCCTACCCGGCGCAGTCGCGNCAGGTGACCGGCGCGCCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGTAAAAGAGAGACCANCCGAAGTAAGAGAGGAAGCCAACGGGAAAGAAAAACCCATTAAATTTGGCAGAATNTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11204#0 ATATTTTCCCACGCATCCGTCTCCTCCTCGCGGAATAATAACCTTTTTTTTTCTTTTTCC 60 consensus_11204#1 ------------------------------------------------------------ consensus_11204#0 AAGCGCCCTTCAAACCCATCTCCTCTCCCCTCTCCCTCCC-AATTCGATGCAGCCGCGGT 119 consensus_11204#1 --------------------TCGGCTTTGTTGGCCTACTGGAATTCGATGCAGCCGCGGT 40 ** ** * ** * ******************* consensus_11204#0 AGCAATTCGCATCGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCG 179 consensus_11204#1 AGCAATTCGCATCGCCCCGCCCTCCTCGCCGCGCGGATTCGCTCGCCGCCCCCGCCACCG 100 ************************************************************ consensus_11204#0 CACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGC 239 consensus_11204#1 CACCCCCATGGACGCCTCCGCCGGATCCGGCAATGCCTCCGGTGGCGCCGGCGCCGGCGC 160 ************************************************************ consensus_11204#0 GTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGT 299 consensus_11204#1 GTCCGCGTGCTGCTACTACTCCCTGCTCGGCATCCGGAAGAACGCGTCCGCCACCGACGT 220 ************************************************************ consensus_11204#0 GCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCC 359 consensus_11204#1 GCGCGCCGCCTACCGGAGGCTCGCCATGAAGTGGCACCCGGACCGGTGCGTGAGCGACCC 280 ************************************************************ consensus_11204#0 CGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAA 419 consensus_11204#1 CGGCGAGGCCAATCGGCGGTTCCAGCGGATCCAAGAGGCGTACTCCGTTCTGTCCGACAA 340 ************************************************************ consensus_11204#0 GGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGA 479 consensus_11204#1 GGGGAAGCGAGCCATGTACGACGCCGGGCTGTTCGATCCCCTCGACGACGACGACCAGGA 400 ************************************************************ consensus_11204#0 TTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCC 539 consensus_11204#1 TTTCTCCGATTTCATGCAGGAGATGCTGGTGATGATGGATAACGTGAAAAACGAGAAGCC 460 ************************************************************ consensus_11204#0 GGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAG 599 consensus_11204#1 GGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAG 520 ************************************************************ consensus_11204#0 CCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGC 659 consensus_11204#1 CCGCGGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGC 580 ************************************************************ consensus_11204#0 GCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGC 719 consensus_11204#1 GCCCTACCCGGCGCAGTCGCGCAGGTGACCGGCGCGCCGGTGTACGAGACGTGCACACGC 640 ************************************************************ consensus_11204#0 CTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAA 779 consensus_11204#1 CTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGCAAACGGGAAAGAAAAA 700 ************************************************************ consensus_11204#0 CCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCG 839 consensus_11204#1 CCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCG 760 ************************************************************ consensus_11204#0 T 840 consensus_11204#1 T 761 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||