|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2440 fasta sequence
[GATAGATATATACTCCTTCCTCCTTCCCCCTCTCTTCCAATCCTAATCCTAATCCTAAAGAAAGAAGTTGGAGAAATCTCACGGCGGAATCAATCCCACGCGATTCGTCGTCGATCTGGCCACGGCACTCCGCTTCTCTCTTCTCCTCTACTCCAGCACAGCAGTATGAGTATGAATTAGGATAGGAGGGAGGGAGGGAGAGGAATAGCATAGCAGCAGCCTGCAGGCGGAGGAATTCCGCCCGATTTGATTTGGATTTGGGATTCTTCTCTTTCGTTTTCGTGTG-TTTTTTTTTTCTTTGTTACTACCCTTCAATTCCTCCCTTTATTTGGGGCCAAGCCAAAGCCAAAGCAATCAACCCCGATTTCACGCCGCAAGATTCTCTTCCTTCTCATGCACCGCCTCTTAATTTCTTCTTCTTTCTTGGGGCCAGACCCCAACCCCCAATCCCTTGACCACCAAGCTCCTGCTTCTTGCAATCTTGATCGATAGTCTCCTCCATCTTCTTCGTCAAGCCTCTCCTCCTTGGATCTTTCTTACTACCTAGGTTTCCTGGTGCAAGTGCAACATGGTTGGGCAGACGGTCATGCGGATTGTGCGCCCCTGCTTCAAGCCCGACCACCAGCTCGCCGTCGGCGGCACCAGGGATGGATTGCTCTGGTACAAGGACACCGGGAGGCACGCTTGCGGCGACTTCTCTATGGCCCTCGTGCAGGCAAACAACCTTCTCGAGGATGCCAGCCAGGTCGAAGCTGCCCCTCTTCTTCTCTCCCACTCCTCCTCCACCACTTTTGTCGGCATCTACGATGGCCATGGTGGCCCGGAGACTGCTCATTTCATCGCACAACATTTCTTCCCCAATCTAAAGAAATTTGCTACGGAACAGCAAACTGTTTCAGTTGATGTCATTCGCAAATCCTATGCTGCCACGGAGGAAGGGTTTCTCAATCTTGTAAGGAAGCAATGGCTCATCAAACCGCAGCTTGCCTCCGTTGGTTCCTGCTGTTTGGTTGGCATCATCAATGAAGGAGTTCTTTATGTAGCAAATACTGGTGATTCCCGTGCTGTTCTAGGGAGACTTGAAAGGGGTGTTATTAAGGCGGTTCAGCTGTCAGCCGAGCATAACGCAAGCATTGAGTCTGTAAGGGAGGAATTAAGACAGTTTCACCCAGACGATCCACGAATCGTGGTCCTAAAGCACAACGTTTGGCGTGTCAAAGGCCTTATTCAGGTTTCCAGAACGTTAGGCGATGCTTACCTAAAAAGTACTGAATTTAACCGAGAGCCTCTTTTGGCGAGATTCCGGCTTTCAGAACCCTTCCACAAACCAATTCTTTCTCCAGAACCATCCATAGAAGTACATAAACTGTGTACAGAAGACCAATTTGTGATATTTGCCTCAGATGGGCTATGGGAGCACCTGACCAATCAGGAGGCTGTGGATATAGTTAACTGTGCGCCAAGAAATGGTATTGCAAGAAGACTAATAAAAGCGGCTCTGCGAGAGGCAGCAAAAAAAAGAGAAATGAGGTACTCAGACTTGAAAAAGATTGATCGCGGGGTCAGGAGACACTTTCACGATGATATTACTGTTGTAGTACTATTCCTGGACTCTGCTCTAGTTGGCAAGAGATTCTATGGTGGCCCATTACTTTCACTGAGGGGTGGTGATGGTGCTTCAACGCTTACACAGAAATGATGAAGATCATAGAGGTTTTCTGAGTGAATAATCCATGGTATCTTGGCTGGTTAAAGGGTGGAGCATATTAATTTTGATTCTATAATATGTACGGATAGACTTGTACCTTTGCATGAGCTCAGGAATGCAAATATTGATCATATTACTCCTATGCGGTTGGCGAAACCTGGGAGCTGCATA-ACTTCAGCATCTCCCTCCGCCTCTCAAGTCTCCGTTGTACTATGTGCTAGAGAGGGCTTTGGAGAGTTTGAAGCTGGAGGTAGCCCTGTGCAATGAGAGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATGTATGTCCATCTTCACCGCGGCAG-AAGAAAGATCCATTCCATCTCGTTCATTCAGTATTTTCGTTCTGCGGTAGTACATATATTTATATAACAGAGAACACATGCAAGTGAGAATCACAATTTTGATTGCAGCATCGAATTGAACTGCCCTATTTGTAAAGCGTTCCTTTGGCAAGTCTTTGGATTTTGAGAG-CAAATTAGTGATCGTCATCCATCAGTTTGTCACTATGTAAAGAGTTGCAGCGATGTGAGCAAAATATCCAATTTATAGAATTTGTTAGTTACTTGCTCTGCCCATTTTTATAGGACCATTTTGATTTCAAAAGGTCGAAATTTGAAGATTTTGACCAACTAGTTAGTCCATGCATATTACGGTGCAAAAGTTAGTAACCTTCGTCCCAAAAAGAGTACAATGAACATGGACTAG]
[+] EMBL CB656242 [GATAGATATATACTCCTTCCTCCTTCCCCCTCTCTTCCAATCCTAATCCTAATCCTAAAGAAAGAAGTTGGAGAAATCTCACGGCGGAATCAATCCCACGCGATTCGTCGTCGATCTGGCCACGGCACTCCGCTTCTCTCTTCTCCTCTACTCCAGCACAGCAGTATGAGTATGAATTAGGATAGGAGGGAGGGAGGGAGAGGAATAGCATAGCAGCAGCCTGCAGGCGGAGGAATTCCGCCCGATTTGATTTGGATTTGGGATTCTTCTCTTTCGTTTTCGTGTGTTTTTTTTTTTCTTTGTTACTACCCTTCAATTCCTCCCTTTATTTGGGGCCAAGCCAAAGCCAAAGCAATCAACCCCGATTTCACGCCGCAAGATTCTCTTCCTTCTCATGCACCGCCTCTTAATTTCTTCTTCTTTCTTGGGGCCAGACCCCAACCCCCAATCCCTTGACCACCAAGCTCCTGCTTCTTGCAATCTTGATCGATAGTCTCCTCCATCTTCTTCGTCAAGCCTCTCCTCCTTGGATCTTTCTTACTACCTAGGTTTCCTGGTGCAAGTGCAACATGGTTGGGCAGACGGTCATGCGGATTGTGCGCCCCTGCTTCAAGCCCGACCACCAGCTCGCCGTCGGCGGCACCAGGGATGGATTGCTCTGGTACAAGGACACCGGGAGGCACGCTTGCGGCGACTTCTCTATGGCCCTCGTGCAGGC ]
[+] EMBL AK100571 [ TAGATACTCCTTCCTCCTTCCCCCTCTCTTCCAATCCTAATCCTAATCCTAAAGAAAGAAGTTGGAGAAATCTCACGGCGGAATCAATCCCACGCGATTCGTCGTCGATCTGGCCACGGCACTCCGCTTCTCTCTTCTCCTCTACTCCAGCACAGCAGTATGAGTATGAATTAGGATAGGAGGGAGGGAGGGAGAGGAATAGCATAGCAGCAGCCTGCAGGCGGAGGAATTCCGCCCGATTTGATTTGGATTTGGGATTCTTCTCTTTCGTTTTCGTGTG TTTTTTTTTTCTTTGTTACTACCCTTCAATTCCTCCCTTTATTTGGGGCCAAGCCAAAGCCAAAGCAATCAACCCCGATTTCACGCCGCAAGATTCTCTTCCTTCTCATGCACCGCCTCTTAATTTCTTCTTCTTTCTTGGGGCCAGACCCCAACCCCCAATCCCTTGACCACCAAGCTCCTGCTTCTTGCAATCTTGATCGATAGTCTCCTCCATCTTCTTCGTCAAGCCTCTCCTCCTTGGATCTTTCTTACTACCTAGGTTTCCTGGTGCAAGTGCAACATGGTTGGGCAGACGGTCATGCGGATTGTGCGCCCCTGCTTCAAGCCCGACCACCAGCTCGCCGTCGGCGGCACCAGGGATGGATTGCTCTGGTACAAGGACACCGGGAGGCACGCTTGCGGCGACTTCTCTATGGCCCTCGTGCAGGCAAACAACCTTCTCGAGGATGCCAGCCAGGTCGAAGCTGCCCCTCTTCTTCTCTCCCACTCCTCCTCCACCACTTTTGTCGGCATCTACGATGGCCATGGTGGCCCGGAGACTGCTCATTTCATCGCACAACATTTCTTCCCCAATCTAAAGAAATTTGCTACGGAACAGCAAACTGTTTCAGTTGATGTCATTCGCAAATCCTATGCTGCCACGGAGGAAGGGTTTCTCAATCTTGTAAGGAAGCAATGGCTCATCAAACCGCAGCTTGCCTCCGTTGGTTCCTGCTGTTTGGTTGGCATCATCAATGAAGGAGTTCTTTATGTAGCAAATACTGGTGATTCCCGTGCTGTTCTAGGGAGACTTGAAAGGGGTGTTATTAAGGCGGTTCAGCTGTCAGCCGAGCATAACGCAAGCATTGAGTCTGTAAGGGAGGAATTAAGACAGTTTCACCCAGACGATCCACGAATCGTGGTCCTAAAGCACAACGTTTGGCGTGTCAAAGGCCTTATTCAGGTTTCCAGAACGTTAGGCGATGCTTACCTAAAAAGTACTGAATTTAACCGAGAGCCTCTTTTGGCGAGATTCCGGCTTTCAGAACCCTTCCACAAACCAATTCTTTCTCCAGAACCATCCATAGAAGTACATAAACTGTGTACAGAAGACCAATTTGTGATATTTGCCTCAGATGGGCTATGGGAGCACCTGACCAATCAGGAGGCTGTGGATATAGTTAACTGTGCGCCAAGAAATGGTATTGCAAGAAGACTAATAAAAGCGGCTCTGCGAGAGGCAGCAAAAAAAAGAGAAATGAGGTACTCAGACTTGAAAAAGATTGATCGCGGGGTCAGGAGACACTTTCACGATGATATTACTGTTGTAGTACTATTCCTGGACTCTGCTCTAGTTGGCAAGAGATTCTATGGTGGCCCATTACTTTCACTGAGGGGTGGTGATGGTGCTTCAACGCTTACACAGAAATGATGAAGATCATAGAGGTTTTCTGAGTGAATAATCCATGGTATCTTGGCTGGTTAAAGGGTGGAGCATATTAATTTTGATTCTATAATATGTACGGATAGACTTGTACCTTTGCATGAGCTCAGGAATGCAAATATTGATCATATTACTCCTATGCGGTTGGCGAAACCTGGGAGCTGCATA ACTTCAGCATCTCCCTCCGCCTCTCAAGTCTCCGTTGTACTATGTGCTAGAGAGGGCTTTGGAGAGTTTGAAGCTGGAGGTAGCCCTGTGCAATGAGAGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATGTATGTCCATCTTCACCGCGGCAG AAGAAAGATCCATTCCATCTCGTTCATTCAGTATTTTCGTTCTGCGGTAGTACATATATTTATATAACAGAGAACACATGCAAGTGAGAATCACAATTTTGATTGCAGCATCGAATTGAACTGCCCTATTTGTAAAGCGTTCCTTTGGCAAGTCTTTGGATTTTGAGAG CAAATTAGTGATCGTCATCCATCAGTTTGTCACTATGTAAAGAGTTGCAGCGATGTGAGCAAAATATCCAATTTATAGAATTTGTTAGTTACTTGCTCTGCCCATTTTTATAGGACCATTTTGATTTCAAAAGGTCGAAATTTGAAGATTTTGACCAACTAGTTAGTCCATGCATATTACGGTGCAAAAGTTAGTAACCTTCGTCCCAAAAAGAGTACAATGAACATGGACTAG]
[-] EMBL AK068121 [ CTACTCCAGCACAGCAGTATGAGTATGAATTAGGATAGGAGGGAGGGAGGGAGAGGAATAGCATAGCAGCAGCCTGCAGGCGGAGGAATTCCGCCCGATTTGATTTGGATTTGGGATTCTTCTCTTTCGTTTTCGTGTG TTTTTTTTTTCTTTGTTACTACCCTTCAATTCCTCCCTTTATTTGGGGCCAAGCCAAAGCCAAAGCAATCAACCCCGATTTCACGCCGCAAGATTCTCTTCCTTCTCATGCACCGCCTCTTAATTTCTTCTTCTTTCTTGGGGCCAGACCCCAACCCCCAATCCCTTGACCACCAAGCTCCTGCTTCTTGCAATCTTGATCGATAGTCTCCTCCATCTTCTTCGTCAAGCCTCTCCTCCTTGGATCTTTCTTACTACCTAGGTTTCCTGGTGCAAGTGCAACATGGTTGGGCAGACGGTCATGCGGATTGTGCGCCCCTGCTTCAAGCCCGACCACCAGCTCGCCGTCGGCGGCACCAGGGATGGATTGCTCTGGTACAAGGACACCGGGAGGCACGCTTGCGGCGACTTCTCTATGGCCCTCGTGCAGGCAAACAACCTTCTCGAGGATGCCAGCCAGGTCGAAGCTGCCCCTCTTCTTCTCTCCCACTCCTCCTCCACCACTTTTGTCGGCATCTACGATGGCCATGGTGGCCCGGAGACTGCTCATTTCATCGCACAACATTTCTTCCCCAATCTAAAGAAATTTGCTACGGAACAGCAAACTGTTTCAGTTGATGTCATTCGCAAATCCTATGCTGCCACGGAGGAAGGGTTTCTCAATCTTGTAAGGAAGCAATGGCTCATCAAACCGCAGCTTGCCTCCGTTGGTTCCTGCTGTTTGGTTGGCATCATCAATGAAGGAGTTCTTTATGTAGCAAATACTGGTGATTCCCGTGCTGTTCTAGGGAGACTTGAAAGGGGTGTTATTAAGGCGGTTCAGCTGTCAGCCGAGCATAACGCAAGCATTGAGTCTGTAAGGGAGGAATTAAGACAGTTTCACCCAGACGATCCACGAATCGTGGTCCTAAAGCACAACGTTTGGCGTGTCAAAGGCCTTATTCAGGTTTCCAGAACGTTAGGCGATGCTTACCTAAAAAGTACTGAATTTAACCGAGAGCCTCTTTTGGCGAGATTCCGGCTTTCA ]
[+] EMBL CA999253 [ TGGTCCTAAAGCACAACGTTTGGCGTGTCAAAGGCCTTATTCAGGTTTCCAGAACGTTAGGCGATGCTTACCTAAAAAGTACTGAATTTAACCGAGAGCCTCTTTTGGCGAGATTCCGGCTTTCAGAACCCTTCCACAAACCAATTCTTTCTCCAGAACCATCCATAGAAGTACATAAACTGTGTACAGAAGACCAATTTGTGATATTTGCCTCAGATGGGCTATGGGAGCACCTGACCAATCAGGAGGCTGTGGATATAGTTAACTGTTCGCCAAGAAATGGTATTGCAAGAAGACTAATAAAAGCGGCTCTGCGAGAGGCAGCAAAAAAAAGAGAAATGAGGTACTCAGACTTGAAAAAGATTGATCGCGGGGTCAGGAGACACTTTCACGATGATATTACTGTTGTAGTACTATTCCTGGACTCTGCTCTAGTTGGCAAGAGATTCTATGGTGGCCCATTACTTTCACTGAGGGGTGGTGATGGTGCTTCAACGCTTACA ]
[+] EMBL BI805352 [ ctTGCATATACTTCAGCATCTCCCTCCGCCTCTCAAGTCTCCGTTGTACTATGTGCTAGAGAGGGCTTTGGAGAGTTTGAAGCTGGAGGTAGCCCTGTGCAATGAGAGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATGTATGTCCATCTTCACCGCGGCAGTAAGAAAGATCCATTCCATCTCGTTCATTCAGTATTTTCGTTCTGCGGTAGTACATATATTTATATAACAGAGAACACATGCAAGTGAGAATCACAATTTTGATTGCAGCATCGTATTGAACTGCCCTATTTGTAAAGCGTTCCTTTGGCAAGTCTTTGGATTTTGAGAGCCAAATTAGTGATCGTCATCCATCAGTTTGTCACTATGTAAAGAGTTGCAGCGATGTGAGCCAAATATCCCATTTATAGAATTTGTTAGTTAaaaaaaaaa ]
consensusID : consensus_11212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence
[CAGAAAGACTAATAAAAGCGGCTCTGCGAGACGCAGCAAAAAAAAGAGAAATGAGGTACTCAGACTTGAAAAAGATTGATCGCGGGGTCAGGAGACACTTTCACGATGATATTACTGTTGTAGTACTATTCCTGGACTCTGCTCTAGTTGGCAAGAGATTCTATGGTGGCCCATTACTTTCACTGATGGGTGGTGATGGTGCTTCAACGCTTACACAGAAATGCTGAAGATCATAGAGGTTTTCTGAGTGAATAATCCATGGTATCTTGGCTGGTTAAAGGGTGGAGCATATTAATTTTGAATTCTATAATATGTACGGATAGACTTGTACCTTTGCATGAGCTCAGGAATGCAAATATTGATCATATTACTCCTATGCGGTTGGCGAAACCTGGGAGCTGCATAACTTCAGCATCTCCCTCCGCCTCTCAAGTCTCCGTTGTACTATGTGCTAGGGAGGGCTTTGGAGAGTTTGAAGCTGGAGTAGCCCTGTGCAATGAGAGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATATATGTCCATCTCACCGCGGCAGAAGAAAGATCCATTCCATTTCGTTCATTCAGTATTTTCGTTCTGCGGTAGTACATAAGTATTTATATAACAGAGAACACATGCAAGTGAGAATCACAATTTTGATTGCAGCATCGTATTTAACTGCCCTATTTGTAAAGCGTTCCTGTATTTTGAGAGCAACTATGTAAAGAGTTGCAGCTATATGAGCAAAATATCCAATTTATAGAATTTGTTAGTTACTTGCTCTGCCCAAAAAAAAAGA]
[-] EMBL CB635595 [CAGAAAGACTAATAAAAGCGGCTCTGCGAGACGCAGCAAAAAAAAGAGAAATGAGGTACTCAGACTTGAAAAAGATTGATCGCGGGGTCAGGAGACACTTTCACGATGATATTACTGTTGTAGTACTATTCCTGGACTCTGCTCTAGTTGGCAAGAGATTCTATGGTGGCCCATTACTTTCACTGATGGGTGGTGATGGTGCTTCAACGCTTACACAGAAATGCTGAAGATCATAGAGGTTTTCTGAGTGAATAATCCATGGTATCTTGGCTGGTTAAAGGGTGGAGCATATTAATTTTGAATTCTATAATATGTACGGATAGACTTGTACCTTTGCATGAGCTCAGGAATGCAAATATTGATCATATTACTCCTATGCGGTTGGCGAAACCTGGGAGCTGCATAACTTCAGCATCTCCCTCCGCCTCTCAAGTCTCCGTTGTACTATGTGCTAGGGAGGGCTTTGGAGAGTTTGAAGCTGGAGTAGCCCTGTGCAATGAGAGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATATATGTCCATCTCACCGCGGCAGAAGAAAGATCCATTCCATTTCGTTCATTCAGTATTTTCGTTCTGCGGTAGTACATAAGTATTTATATAACAGAGAACACATGCAAGTGAGAATCACAATTTTGATTGCAGCATCGTATTTAACTGCCCTATTTGTAAAGCGTTCCTGTATTTTGAGAGCAACTATGTAAAGAGTTGCAGCTATATGAGCAAAATATCCAATTTATAGAATTTGTTAGTTACTTGCTCTGCCCAAAAAAAAAGA]
consensusID : consensus_11212#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[TACTCCTTCCTCCTTCCCCCTCTCTTCCAATCCTAATCCTAATCCTAAAGAAAGAAGTTGGAGAAATCGGAATCAATCCCACGCGATTCGTCGTCGATCTGGCCACGGCACTCCGCTTCTCTCTTCTCCTCTACTCCAGCACAGCAGTATGAGTATGAATTAGGATAGGAGGGAGGGAGGGAGAGGAATAGCATAGCAGCAGCCTGCAGGCGGAGGAATTCCGCCCGATTTGATTTGGATTTGGGATTCTTCTCTTTCGTTTTCGTGTGGTTTTTTTTTCTTGCTACTACCTTCAATTCCTCCCTTTATTTGGGGCCAAAGCCAAAGCAATCAACCCCGATTTCACGCCGCAAGATTCTCTTCCTTCTCATGCACCGCCTCTTAATTTCTTCTTCTTTCTTTTCTTTCTTGGGGCCGGACACCAACCCCAATCCGGTAACCTTTCTTGACCACCAAGCTCCTGCTTCTTGCAATCTTGATAGATAGGAATAGAGGATAGCCTCCTCCATCTTCAAGCCTCTCCTCTTTGGATCTTTCTTACTACCTAGGTTTCCTGGTGCAAGTGCAACATGGTTGGGCAGATGGTCATGCGGATTGTGCGCCCCTGCTTCAAGCCCGACCACCAGCTCGCCGTCGGCGGCGGCGGCACCAGGGATGGATTGCTCTGGTACAAGGACACCGGGAGGCATGCTTGCGGGGACTTCTCCATGGCCCTCGTGCAGGCAAACAACCTTCTCGAGGATGTCAGTCAGGTCGAAGCTGCCCCTCTTCTCTNCCACTCCTCCTCACCACTTTTG]
[+] EMBL CB635594 [TACTCCTTCCTCCTTCCCCCTCTCTTCCAATCCTAATCCTAATCCTAAAGAAAGAAGTTGGAGAAATCGGAATCAATCCCACGCGATTCGTCGTCGATCTGGCCACGGCACTCCGCTTCTCTCTTCTCCTCTACTCCAGCACAGCAGTATGAGTATGAATTAGGATAGGAGGGAGGGAGGGAGAGGAATAGCATAGCAGCAGCCTGCAGGCGGAGGAATTCCGCCCGATTTGATTTGGATTTGGGATTCTTCTCTTTCGTTTTCGTGTGGTTTTTTTTTCTTGCTACTACCTTCAATTCCTCCCTTTATTTGGGGCCAAAGCCAAAGCAATCAACCCCGATTTCACGCCGCAAGATTCTCTTCCTTCTCATGCACCGCCTCTTAATTTCTTCTTCTTTCTTTTCTTTCTTGGGGCCGGACACCAACCCCAATCCGGTAACCTTTCTTGACCACCAAGCTCCTGCTTCTTGCAATCTTGATAGATAGGAATAGAGGATAGCCTCCTCCATCTTCAAGCCTCTCCTCTTTGGATCTTTCTTACTACCTAGGTTTCCTGGTGCAAGTGCAACATGGTTGGGCAGATGGTCATGCGGATTGTGCGCCCCTGCTTCAAGCCCGACCACCAGCTCGCCGTCGGCGGCGGCGGCACCAGGGATGGATTGCTCTGGTACAAGGACACCGGGAGGCATGCTTGCGGGGACTTCTCCATGGCCCTCGTGCAGGCAAACAACCTTCTCGAGGATGTCAGTCAGGTCGAAGCTGCCCCTCTTCTCTNCCACTCCTCCTCACCACTTTTG]
consensusID : consensus_11212#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[GGTGGCCCATCACTTTCACTGATGGGTGGTGATGGTGCTTCAACGCTTACACAGAAATGCTGAAGATCATAGAGGTTTTCTGAGTGAATAATCCATGGTATCTTGGCTGGTTAAAGGGTGGAGCATATTAATTTTGAATTCTATAATATGTACGGATAGACTTGTACCTTTGCATGAGCTCAGGAATGCAAATATTGATCATATTACTCCTATGCGGTTGCCGAAACCTGGGAGCTGCATAACTTCAGCATCTCCCTCCGCCTCTCAAGTCTCCGTTGTACTATGTGCTAGAGAGGGCTTTGGAGAGTTTGAAGCTGGAGTAGCCCTGTGCCATGAGAGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATATATGTTCATCTCACCCCGGCAAAAGAAAGATCCATTCCATTTCCTTCCTTCATTATTTTCGTTCTGCCGTAGTACCTTAGTATTTATATACCCGAAAACCCCTGCAAGGTGAGAAATTCCCATTTTGGATGGCAGCCTCCTATTTGACCCGCCCCTATTGGTAAAGCCGTCCCGGTATTGCGAAAAACCACCATGGTAANAAGTTGCCCCCAATATAAACCACAATATCCCAATTAATAAAATTTGGGTAACTTAAAAAAAAAAAAAATAAACCCAAGGGGGGGCCCGGATCCCAATTCNCCCTATAN]
[+] EMBL CA753077 [GGTGGCCCATCACTTTCACTGATGGGTGGTGATGGTGCTTCAACGCTTACACAGAAATGCTGAAGATCATAGAGGTTTTCTGAGTGAATAATCCATGGTATCTTGGCTGGTTAAAGGGTGGAGCATATTAATTTTGAATTCTATAATATGTACGGATAGACTTGTACCTTTGCATGAGCTCAGGAATGCAAATATTGATCATATTACTCCTATGCGGTTGCCGAAACCTGGGAGCTGCATAACTTCAGCATCTCCCTCCGCCTCTCAAGTCTCCGTTGTACTATGTGCTAGAGAGGGCTTTGGAGAGTTTGAAGCTGGAGTAGCCCTGTGCCATGAGAGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATATATGTTCATCTCACCCCGGCAAAAGAAAGATCCATTCCATTTCCTTCCTTCATTATTTTCGTTCTGCCGTAGTACCTTAGTATTTATATACCCGAAAACCCCTGCAAGGTGAGAAATTCCCATTTTGGATGGCAGCCTCCTATTTGACCCGCCCCTATTGGTAAAGCCGTCCCGGTATTGCGAAAAACCACCATGGTAANAAGTTGCCCCCAATATAAACCACAATATCCCAATTAATAAAATTTGGGTAACTTAAAAAAAAAAAAAATAAACCCAAGGGGGGGCCCGGATCCCAATTCNCCCTATAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 GATAGATATATACTCCTTCCTCCTTCCCCCTCTCTTCCAATCCTAATCCTAATCCTAAAG 60
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 AAAGAAGTTGGAGAAATCTCACGGCGGAATCAATCCCACGCGATTCGTCGTCGATCTGGC 120
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CACGGCACTCCGCTTCTCTCTTCTCCTCTACTCCAGCACAGCAGTATGAGTATGAATTAG 180
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 GATAGGAGGGAGGGAGGGAGAGGAATAGCATAGCAGCAGCCTGCAGGCGGAGGAATTCCG 240
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CCCGATTTGATTTGGATTTGGGATTCTTCTCTTTCGTTTTCGTGTGTTTTTTTTTTCTTT 300
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 GTTACTACCCTTCAATTCCTCCCTTTATTTGGGGCCAAGCCAAAGCCAAAGCAATCAACC 360
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CCGATTTCACGCCGCAAGATTCTCTTCCTTCTCATGCACCGCCTCTTAATTTCTTCTTCT 420
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 TTCTTGGGGCCAGACCCCAACCCCCAATCCCTTGACCACCAAGCTCCTGCTTCTTGCAAT 480
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CTTGATCGATAGTCTCCTCCATCTTCTTCGTCAAGCCTCTCCTCCTTGGATCTTTCTTAC 540
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 TACCTAGGTTTCCTGGTGCAAGTGCAACATGGTTGGGCAGACGGTCATGCGGATTGTGCG 600
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CCCCTGCTTCAAGCCCGACCACCAGCTCGCCGTCGGCGGCACCAGGGATGGATTGCTCTG 660
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 GTACAAGGACACCGGGAGGCACGCTTGCGGCGACTTCTCTATGGCCCTCGTGCAGGCAAA 720
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CAACCTTCTCGAGGATGCCAGCCAGGTCGAAGCTGCCCCTCTTCTTCTCTCCCACTCCTC 780
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CTCCACCACTTTTGTCGGCATCTACGATGGCCATGGTGGCCCGGAGACTGCTCATTTCAT 840
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CGCACAACATTTCTTCCCCAATCTAAAGAAATTTGCTACGGAACAGCAAACTGTTTCAGT 900
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 TGATGTCATTCGCAAATCCTATGCTGCCACGGAGGAAGGGTTTCTCAATCTTGTAAGGAA 960
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 GCAATGGCTCATCAAACCGCAGCTTGCCTCCGTTGGTTCCTGCTGTTTGGTTGGCATCAT 1020
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CAATGAAGGAGTTCTTTATGTAGCAAATACTGGTGATTCCCGTGCTGTTCTAGGGAGACT 1080
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 TGAAAGGGGTGTTATTAAGGCGGTTCAGCTGTCAGCCGAGCATAACGCAAGCATTGAGTC 1140
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 TGTAAGGGAGGAATTAAGACAGTTTCACCCAGACGATCCACGAATCGTGGTCCTAAAGCA 1200
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CAACGTTTGGCGTGTCAAAGGCCTTATTCAGGTTTCCAGAACGTTAGGCGATGCTTACCT 1260
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 AAAAAGTACTGAATTTAACCGAGAGCCTCTTTTGGCGAGATTCCGGCTTTCAGAACCCTT 1320
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CCACAAACCAATTCTTTCTCCAGAACCATCCATAGAAGTACATAAACTGTGTACAGAAGA 1380
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CCAATTTGTGATATTTGCCTCAGATGGGCTATGGGAGCACCTGACCAATCAGGAGGCTGT 1440
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 -----------------------------------CAGAAAGACTAATAAAAGCGGCTCT 25
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 GGATATAGTTAACTGTGCGCCAAGAAATGGTATTGCAAGAAGACTAATAAAAGCGGCTCT 1500
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 GCGAGACGCAGCAAAAAAAAGAGAAATGAGGTACTCAGACTTGAAAAAGATTGATCGCGG 85
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 GCGAGAGGCAGCAAAAAAAAGAGAAATGAGGTACTCAGACTTGAAAAAGATTGATCGCGG 1560
consensus_11212#2 ------------------------------------------------TACTCCTTCCTC 12
consensus_11212#1 GGTCAGGAGACACTTTCACGATGATATTACTGTTGTAGTACTATTCCTG-GACTCTGCTC 144
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 GGTCAGGAGACACTTTCACGATGATATTACTGTTGTAGTACTATTCCTG-GACTCTGCTC 1619
consensus_11212#2 CTTCCCCCTCTCTTCCAATCCTAATCCTAATCCTAAAGAAAGAAGTTGGAGAAATCGGAA 72
consensus_11212#1 TAGTTGGCAAGAGATTCTATGGTGGCCCATTACTTTCACTGATGGGTGGTGATGGTGCTT 204
consensus_11212#3 --------------------GGTGGCCCATCACTTTCACTGATGGGTGGTGATGGTGCTT 40
consensus_11212#0 TAGTTGGCAAGAGATTCTATGGTGGCCCATTACTTTCACTGAGGGGTGGTGATGGTGCTT 1679
consensus_11212#2 TCAATCCCACGCGATTCGTCGTCGATCTGGCCACGGCACT--CCGCTTCTCTCTTCTCCT 130
* * * **** * * * * *
consensus_11212#1 CAACGCTTACACAGAAATGC---TGAAGATCATAGAGGTTTTCTGAGTGAATAATCCATG 261
consensus_11212#3 CAACGCTTACACAGAAATGC---TGAAGATCATAGAGGTTTTCTGAGTGAATAATCCATG 97
consensus_11212#0 CAACGCTTACACAGAAATGA---TGAAGATCATAGAGGTTTTCTGAGTGAATAATCCATG 1736
consensus_11212#2 CTACTCCAGCACAGCAGTATGAGTATGAATTAGGATAGGAGGGAGGGAGGGAGAGGAATA 190
* ** * ***** * * * ** * * * * * * **
consensus_11212#1 GTATCTTGGCTGGTTAAAGGGTGGAGCATATTAATTTTGAATTCTATAATATGTACGGAT 321
consensus_11212#3 GTATCTTGGCTGGTTAAAGGGTGGAGCATATTAATTTTGAATTCTATAATATGTACGGAT 157
consensus_11212#0 GTATCTTGGCTGGTTAAAGGGTGGAGCATATTAATTTTGA-TTCTATAATATGTACGGAT 1795
consensus_11212#2 GCATAGCAGCAGCCTGCAGG-CGGAGGA-ATTCCGCCCGATTTGATTTGGATTTGGGATT 248
* ** ** * * *** **** * *** ** ** * ** * * *
consensus_11212#1 AGACTTGTACCTTTGCATG-AGCTCAGGAATGCAAATATTGATCATATTACTCCTATGCG 380
consensus_11212#3 AGACTTGTACCTTTGCATG-AGCTCAGGAATGCAAATATTGATCATATTACTCCTATGCG 216
consensus_11212#0 AGACTTGTACCTTTGCATG-AGCTCAGGAATGCAAATATTGATCATATTACTCCTATGCG 1854
consensus_11212#2 CTTCTCTTTCGTTTTCGTGTGGTTTTTTTTTCTTGCTACTACCTTCAATTCCTCCCTTTA 308
** * * *** * ** * * * ** * * * * * *
consensus_11212#1 GTTGGCGAAACCTGGGAGCTGCATAACTTCAGCATCTCCCTCC--GCCTCTCAAGTCTCC 438
consensus_11212#3 GTTGCCGAAACCTGGGAGCTGCATAACTTCAGCATCTCCCTCC--GCCTCTCAAGTCTCC 274
consensus_11212#0 GTTGGCGAAACCTGGGAGCTGCATAACTTCAGCATCTCCCTCC--GCCTCTCAAGTCTCC 1912
consensus_11212#2 TTTGGGGCCAAAGCCAAAGCAATCAACCCCGATTTCACGCCGCAAGATTCTCTTCCTTCT 368
*** * * * *** * ** * * * * **** **
consensus_11212#1 GTTGTACTATGTGCTAGGGAGGGCTTTGGAGAGTTTGAAGCTGGAG-TAGCCCTGTGCAA 497
consensus_11212#3 GTTGTACTATGTGCTAGAGAGGGCTTTGGAGAGTTTGAAGCTGGAG-TAGCCCTGTGCCA 333
consensus_11212#0 GTTGTACTATGTGCTAGAGAGGGCTTTGGAGAGTTTGAAGCTGGAGGTAGCCCTGTGCAA 1972
consensus_11212#2 CATGCACCGCCTCTTAATTTCTTCTTCTTTCTTTTCTTTCTTGGGGCCGGACACCAACCC 428
** ** * ** *** ** *** * * * *
consensus_11212#1 TGAG--AGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATATATGTCCATCT-CACC 554
consensus_11212#3 TGAG--AGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATATATGTTCATCT-CACC 390
consensus_11212#0 TGAG--AGCCGGACTTGTTTGCTTTCAGCTTTGGACTTTGAATGTATGTCCATCTTCACC 2030
consensus_11212#2 CAATCCGGTAACCTTTCTTGACCACCAAGCTCCTGCTTCTTGCA-ATCTTGATAG--ATA 485
* * ** ** * ** * *** ** * ** *
consensus_11212#1 GCGGCAGAAGAAAGATCCATTCCATTTCGTTCATTCAGTATTTTCGTTCTGCGGTAGTAC 614
consensus_11212#3 CCGGCAAAAGAAAGATCCATTCCATTTCCTTCCTTCATTATTTTCGTTCTGCCGTAGTAC 450
consensus_11212#0 GCGGCAGAAGAAAGATCCATTCCATCTCGTTCATTCAGTATTTTCGTTCTGCGGTAGTAC 2090
consensus_11212#2 GGAATAGAGGATAGCCTC-CTCCATCTTCAAGCCTCTCCTCTTTGGATCTTTCTTACTAC 544
* * ** ** * ***** * ** *** * *** ** ***
consensus_11212#1 ATAAGTATTTATATAACAGAGAACACATGCAAG-TGAGAA--TCACAATTTTGATTGCAG 671
consensus_11212#3 CTTAGTATTTATATACCCGAAAACCCCTGCAAGGTGAGAAATTCCCATTTTGGATGGCAG 510
consensus_11212#0 AT--ATATTTATATAACAGAGAACACATGCAAG-TGAGAA--TCACAATTTTGATTGCAG 2145
consensus_11212#2 CTAGGTTTCCTGGTGCAAGTGCA-ACATG---GTTGGGCAGATGGTCATGCGGATTGTGC 600
* * * * * * * ** * ** * * * * *** *
consensus_11212#1 CATCGTATTTAACTG--CCCTATTTGTAAAGC-------------GTTCCTGTATTTTGA 716
consensus_11212#3 CCTCCTATTTGACCCGCCCCTATTGGTAAAGCC------------GTCCCGGTATTGCGA 558
consensus_11212#0 CATCGAATTGAACTG--CCCTATTTGTAAAGCGTTCCTTTGGCAAGTCTTTGGATTTTGA 2203
consensus_11212#2 GCCCCTGCTTCAAGCCCGACCACCAGCTCGCCGT------CGGCGGCGGCGGCACCAGGG 654
* * * * * * * * * * *
consensus_11212#1 GAG-----------------------------CAACTATG-TAAAGAGTTGCAGCTA--- 743
consensus_11212#3 AAAA----------------------------CCACCATGGTAANAAGTTGCCCCCAA-- 588
consensus_11212#0 GAGCAAATTAGTGATCGTCATCCATCAGTTTGTCACTATG-TAAAGAGTTGCAGCGA--- 2259
consensus_11212#2 ATGGA---------------------------TTGCTCTGGTACAAGGACACCGGGAGGC 687
* ** ** * * *
consensus_11212#1 -TATGAGCAA-AATATCC-AAT--TTATAGAATTTGTTAGTTACTTGCTCTGCCCAAAA- 797
consensus_11212#3 -TATAAACCACAATATCCCAAT--TAATAAAATTTG--GGTAACTTAAAAAAAAAAAAA- 642
consensus_11212#0 -TGTGAGCAA-AATATCC-AAT--TTATAGAATTTGTTAGTTACTTGCTCTGCCCATTTT 2314
consensus_11212#2 ATGCTTGCGGGGACTTCTCCATGGCCCTCGTGCAGGCAAACAACCTTCTCGAGGATGTCA 747
* * * ** ** * * ** *
consensus_11212#1 -AAAAAGA---------------------------------------------------- 804
consensus_11212#3 -ATAAACCCAAGGGGGGGCCCGGATCCCAATTCNCCCTATAN------------------ 683
consensus_11212#0 TATAGGACCATTTTGATTTCAAAAGGTCGAAATTTGAAGATTTTGACCAACTAGTTAGTC 2374
consensus_11212#2 GTCAGGTCGAAGCTGCCCCTCTTCTCTNCCACTCCTCCTCACCACTTTTG---------- 797
*
consensus_11212#1 ------------------------------------------------------------
consensus_11212#3 ------------------------------------------------------------
consensus_11212#0 CATGCATATTACGGTGCAAAAGTTAGTAACCTTCGTCCCAAAAAGAGTACAATGAACATG 2434
consensus_11212#2 ------------------------------------------------------------
consensus_11212#1 ------
consensus_11212#3 ------
consensus_11212#0 GACTAG 2440
consensus_11212#2 ------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||