These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1109 fasta sequence [CGCCGCCGCCGCCGCAACACCAAGAAGATGGCGGCGGACTCGCTGGACATGTCCCTCGACGACCTCATCACCAACAAGTACAAGCGCCGCTCCCGTCCAGATCCAGCGCCCTCTGCCCGCCGCTTCCACTCCCGCGCCGCCACCCGCGCTGCTGCCGCTCCCTATCACGCCATCACCTTTCAGGTATAGTTTCTCTTTCTTTTTCTTGATTTGTCGCCCGGCCCGACGACCACGATCTACTCACTAGGGTTTCTGCCTAGGCGCCGCCCACGGCCTACACCCACCCGACGCCCGTCGAGACCGGCACCAAGCTCCACATCTCCAACCTCGACTACGCCGTCTCCAATGAGGACATCAAGGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACAGGAGTGGAAGATCCAAGGGAACTGCAGAGGTTGTATTTTCCAGAAAATCTGACGCCCTGGCTGCTGTTAAGAGGTACAACAATGTGCAGCTGGATGGCAAACCTATGAAACTTGAGCTCATTGGTATAAATATTGAGCCACCACCACCTGCTAT-TTTTGGTTTCGCTGCACCAGCTGGATACTTCGATTTTCCTCCCAAAAGGGGTGGAAGAGGATGGCCTCGGGGCAGGGGTGGATTTGGTGGGCGTGGTCGGGGTCATGTGGGTCGTGGGCGAGGGAGGGGAGACCGTGGAAGTCGGAAGATTTCTGCTGAAGACCTGGATGCTGACTTGGACAAGTACCATGCGGAAGGAATGCAAATGAGCTAGATGACCCTCACGCTTTGTTGCCTTGCCTTGATTGCATTAGGTAGAGACAGGGGGACAAACTAGTAGGCCTTCCTTGGTCTCCTTGTTAGTATTTTGTAGGGATAGATGCAGACCAACATATGTATACTTTGTTTAGATGGTGTCATAATTTTGAGCAGGGAATGGCTAAGCTTAACCTGGTAGGTAGAAGCTAGCTCATAATATGTAACACGGAGGGAGCACAACTTTGAACTTTTATAGCTAGTGTTGAACTTTTAGCTAGTGTGGGACTGTGGGTTGATGGACACACAAGCAAAGCAAGCATGCAGCTTGGCAGCCTGGCAAGAGGAT] [+] EMBL CF315149 [CGCCGCCGCCGCCGCAACACCAAGAAGATGGCGGCGGACTCGCTGGACATGTCCCTCGACGACCTCATCACCAACAAGTACAAGCGCCGCTCCCGTCCAGATCCAGCGCCCTCTGCCCGCCGCTTCCACTCCCGCGCCGCCACCCGCGCTGCTGCCGCTCCCTATCACGCCATCACCTTTCAGGTATAGTTTCTCTTTCTTTTTCTTGATTTGTCGCCCGGCCCGACGACCACGATCTACTCACTAGGGTTTCTGCCTAGGCGCCGCCCACGGCCTACACCCACCCGACGCCCGTCGAGACCGGCACCAAGCTCCACATCTCCAACCTCGACTACGCCGTCTCCAATGAGGACATCAAGGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACAAGAGTGGAAGATCCAAGGGAACTGCAGAGGTTGTATTTTCCAGAAAATCTGATGCCCTGGCTGCTGTTAAGAGATACAACAATGTGCAGCTGGATGGCAAACCTATGAAACTTGAGCTCATTGGTATAAATATTGAGCCACCACCACCTGCTATGTTTTGGTTTCGCTGCACCAGCTGGATACTT ] [+] EMBL AK068452 [ CAAGGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACAGGAGTGGAAGATCCAAGGGAACTGCAGAGGTTGTATTTTCCAGAAAATCTGACGCCCTGGCTGCTGTTAAGAGGTACAACAATGTGCAGCTGGATGGCAAACCTATGAAACTTGAGCTCATTGGTATAAATATTGAGCCACCACCACCTGCTAT TTTTGGTTTCGCTGCACCAGCTGGATACTTCGATTTTCCTCCCAAAAGGGGTGGAAGAGGATGGCCTCGGGGCAGGGGTGGATTTGGTGGGCGTGGTCGGGGTCATGTGGGTCGTGGGCGAGGGAGGGGAGACCGTGGAAGTCGGAAGATTTCTGCTGAAGACCTGGATGCTGACTTGGACAAGTACCATGCGGAAGGAATGCAAATGAGCTAGATGACCCTCACGCTTTGTTGCCTTGCCTTGATTGCATTAGGTAGAGACAGGGGGACAAACTAGTAGGCCTTCCTTGGTCTCCTTGTTAGTATTTTGTAGGGATAGATGCAGACCAACATATGTATACTTTGTTTAGATGGTGTCATAATTTTGAGCAGGGAATGGCTAAGCTTAACCTGGTAGGTAGAAGCTAGCTCATAATATGTAACACGGAGGGAGCACAACTTTGAACTTTTATAGCTAGTGTTGAACTTTTAGCTAGTGTGGGACTGTGGGTTGATGGACACACAAGCAAAGCAAGCATGCAGCTTGGCAGCCTGGCAAGAGGAT] [+] EMBL AK061492 [ CAAGGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACAGGAGTGGAAGATCCAAGGGAACTGCAGAGGTTGTATTTTCCAGAAAATCTGACGCCCTGGCTGCTGTTAAGAGGTACAACAATGTGCAGCTGGATGGCAAACCTATGAAACTTGAGCTCATTGGTATAAATATTGAGCCACCACCACCTGCTAT TTTTGGTTTCGCTGCACCAGCTGGATACTTCGATTTTCCTCCCAAAAGGGGTGGAAGAGGATGGCCTCGGGGCAGGGGTGGATTTGGTGGGCGTGGTCGGGGTCATGTGGGTCGTGGGCGAGGGAGGGGAGACCGTGGAAGTCGGAAGATTTCTGCTGAAGACCTGGATGCTGACTTGGACAAGTACCATGCGGAAGGAATGCAAATGAGCTAGATGACCCTCACGCTTTGTTGCCTTGCCTTGATTGCATTAGGTAGAGACAGGGGGACAAACTAGTAGGCCTTCCTTGGTCTCCTTGTTAGTATTTTGTAGGGATAGATGCAGACCAACATATGTATACTTTGTTTAGATGGTGTCATAATTTTGAGCAGGGAATGGCTAAGCTTAACCTGGTAGGTAGAAGCTAGCTCATAATATGTAACACGGAGGGAGCACAACTTTGAACTTTTATAGCTAGTGTTGAACTTTTAGCTAGTGTGGGACTGTGGGTTGATGGACACACAAGCAAAGCAAGCATGCAGCTTGGCAGCCTGGCAAGAGGAT] [+] EMBL OS0562A [ CAAGGAACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACAGGAGTNGAAGATCCAAGGGAACTGCAGAGGTTGTATTTTCCAGAAAATCTGACGCCCTGGCTGCTGTTAAGAGGTACAACAATGTGCAGCTGGATGGCAAACCTATGAAACTTGAGCTCATTGGTATAAATATTGAGCCACCACCANCTGCTAT TTTTGGTTTCGCTGCACCAGCTGGATACTTCGATTTTCCT CCAAAAG ] [-] EMBL CA763259 [ gaggtcgcgCCAAGGCGCCTCGAGAGGTGGTATTTTCCAGAAAATCTGATGCCCTGGTGGCTGTTAAGAGATCCAACAATGTGCAGCGGGATGGCAAACCTATGAAACTTGAGCTCATTGGTATAAATATTGAGCCACCACCCCTTGCTAT GTTTGGTTTCCCTGCACCAGCCGGATACTTCGATTTTCCTCCCAAAAGGGGTGGAAGAGGATGGCCTCGGGGCAGGGGTGGATTTGGTGGGCGTGGTCGGGGTCATGTGGGTCGTGGCCGAGGGAGGGGAGACCGTGGAAGTCGGAAGATTTCTGCTGAAGACCTGGATGCTGACTTGGACAAGTACCATGCGGAAGGAATGCAAATGAGCTAGATGACCCTCACGCTTTGTTGCCTTGCCTTGATTGCATTAGGTAGAGACAGGGGGACAAACTAGTAGGCCTTCCTTGGTCTCCTTGTTAGTATTTTGTAGGGATAGATGCAGACCAACATATGTATACTTTGTTTAGATGGTGTCATAATTTTGAGCAGGGAATGGCTAAGCTTAACCTGGTAGGTAGAAGCTAGCTCATAATATGTAACACGGAGGGAGCACAACTTTGAACTTTTATAGCTAGTGTTGAACTTTTAGCTAGTGTGGGACTGTGGGTTGATGGCCCCAAAAAAAAAaaa ] consensusID : consensus_11218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [AACTTGAGCCNCATTGGGTATAAATAATTGANCCACCCACCACCTGCTATTTTTGGTTTCGCTGCACCAGCTGGATACTTCCGATTTTCCTCCCAAAAGGGGTGGAAGAGGATGNCCTCGGGGCAGGGGTGGATTTGGTGGGCGTGGTCGGGGTCATGTGGGTCGTGGGCGAGGGAGGGGAGACCGTGGAAGTCGGAAGATTTCTGCTGAAGACCTGGATGCTGACTTGGACAAGTACCATGCGGAAGGAATGCAAATGAGCTAGATGACCCTCACGCTTTGTTGCCTTGCCTTGATTGCATTAGGTAGAGACAGGGGGACAAACTAGTAGGCCTTCCTTGGTCTCCTTGTTAGTATTTTGTAGGGATAGATGCAGACCAACATATGTATACTTTGTTTAGATGGTGTCATAATTTTGAGCAGGGAATGGCTAAGCTTAACCTGGTAGGTAGAAGCTAGCTCATAATAAAAAAAAAAAAAAAA] [+] EMBL C98074 [AACTTGAGCCNCATTGGGTATAAATAATTGANCCACCCACCACCTGCTATTTTTGGTTTCGCTGCACCAGCTGGATACTTCCGATTTTCCTCCCAAAAGGGGTGGAAGAGGATGNCCTCGGGGCAGGGGTGGATTTGGTGGGCGTGGTCGGGGTCATGTGGGTCGTGGGCGAGGGAGGGGAGACCGTGGAAGTCGGAAGATTTCTGCTGAAGACCTGGATGCTGACTTGGACAAGTACCATGCGGAAGGAATGCAAATGAGCTAGATGACCCTCACGCTTTGTTGCCTTGCCTTGATTGCATTAGGTAGAGACAGGGGGACAAACTAGTAGGCCTTCCTTGGTCTCCTTGTTAGTATTTTGTAGGGATAGATGCAGACCAACATATGTATACTTTGTTTAGATGGTGTCATAATTTTGAGCAGGGAATGGCTAAGCTTAACCTGGTAGGTAGAAGCTAGCTCATAATAAAAAAAAAAAAAAAA] consensusID : consensus_11218#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [CAGAGGNTGNATTTTCCAGAAAATCTGATGCCCTGGCTGCTGTTAAGAGATACANCAATGTGCAGCTGGATGGCAAACCTATGAAACTTGAGCTCATTGGTATAAATATTGAGCCACCACCACCTGCTATGTTTGGTTTCGCTGCACCAGCTGGATACTATGATTTTCCTCCCAAAAGACAGAGNTTNNNTTTTNACCAGTAAAGTTTGTACAATGGGGTTCTGACANGANGGGGNTTNAAAAGCGCCCCCCCCTTGGAAAATCTTGCCGTACTTTTGAGACANANGNNGAGNTTATGCCAAGANAAAAAAANAAAANTANAAAATTTT] [+] EMBL CA766403 [CAGAGGNTGNATTTTCCAGAAAATCTGATGCCCTGGCTGCTGTTAAGAGATACANCAATGTGCAGCTGGATGGCAAACCTATGAAACTTGAGCTCATTGGTATAAATATTGAGCCACCACCACCTGCTATGTTTGGTTTCGCTGCACCAGCTGGATACTATGATTTTCCTCCCAAAAGACAGAGNTTNNNTTTTNACCAGTAAAGTTTGTACAATGGGGTTCTGACANGANGGGGNTTNAAAAGCGCCCCCCCCTTGGAAAATCTTGCCGTACTTTTGAGACANANGNNGAGNTTATGCCAAGANAAAAAAANAAAANTANAAAATTTT] consensusID : consensus_11218#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [TAATATGTAACACGGAGGGAGCACAACTTTGAACTTTTATAGCTAGTGTTGAACTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGAAAAAACAAAAACCCACTGAAGGGCCATTCCGTGGCCAAGGGCAAATTCCCGCCCTATAAATACAATTCCCCCAATAGAGAGGCCTTTTACAATCAACGGCCCGACTGTTAAAACCCTGGGGATGGGAAAATCCTTGGCTTTCCCCAACTTACCCCTTTTGCCACCTATCCCCT] [+] EMBL CF318001 [TAATATGTAACACGGAGGGAGCACAACTTTGAACTTTTATAGCTAGTGTTGAACTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGAAAAAACAAAAACCCACTGAAGGGCCATTCCGTGGCCAAGGGCAAATTCCCGCCCTATAAATACAATTCCCCCAATAGAGAGGCCTTTTACAATCAACGGCCCGACTGTTAAAACCCTGGGGATGGGAAAATCCTTGGCTTTCCCCAACTTACCCCTTTTGCCACCTATCCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11218#0 CGCCGCCGCCGCCGCAACACCAAGAAGATGGCGGCGGACTCGCTGGACATGTCCCTCGAC 60 consensus_11218#1 ------------------------------------------------------------ consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 GACCTCATCACCAACAAGTACAAGCGCCGCTCCCGTCCAGATCCAGCGCCCTCTGCCCGC 120 consensus_11218#1 ------------------------------------------------------------ consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 CGCTTCCACTCCCGCGCCGCCACCCGCGCTGCTGCCGCTCCCTATCACGCCATCACCTTT 180 consensus_11218#1 ------------------------------------------------------------ consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 CAGGTATAGTTTCTCTTTCTTTTTCTTGATTTGTCGCCCGGCCCGACGACCACGATCTAC 240 consensus_11218#1 ------------------------------------------------------------ consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 TCACTAGGGTTTCTGCCTAGGCGCCGCCCACGGCCTACACCCACCCGACGCCCGTCGAGA 300 consensus_11218#1 ------------------------------------------------------------ consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 CCGGCACCAAGCTCCACATCTCCAACCTCGACTACGCCGTCTCCAATGAGGACATCAAGG 360 consensus_11218#1 ------------------------------------------------------------ consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 AACTCTTCTCTGAGGTTGGCGATGTCAAGCGTTACTCTATTAACTATGACAGGAGTGGAA 420 consensus_11218#1 ------------------------------------------------------------ consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 GATCCAAGGGAACTGCAGAGGTTGTATTTTCCAGAAAATCTGACGCCCTGGCTGCTGTTA 480 consensus_11218#1 ------------------------------------------------------------ consensus_11218#2 ---------------CAGAGGNTGNATTTTCCAGAAAATCTGATGCCCTGGCTGCTGTTA 45 consensus_11218#3 ---------------------------------------------TAATATGTAACACGG 15 consensus_11218#0 AGAGGTACAACAATGTGCAGCTGGATGGCAAACCTATGAAACTTGAGC-TCATTGG-TAT 538 consensus_11218#1 ---------------------------------------AACTTGAGCCNCATTGGGTAT 21 consensus_11218#2 AGAGATACANCAATGTGCAGCTGGATGGCAAACCTATGAAACTTGAGC-TCATTGG-TAT 103 consensus_11218#3 AGGGA-GCACAACTTTGAACTTTTATAGCTAG--TGTTGAACTTTTAAAAAAAAAAAAAA 72 ***** * * consensus_11218#0 AAATA-TTGAGCCACC-ACCACCTGCTATTTTTGGTTTCGCTGCACCAGCTGGATACTTC 596 consensus_11218#1 AAATAATTGANCCACCCACCACCTGCTATTTTTGGTTTCGCTGCACCAGCTGGATACTTC 81 consensus_11218#2 AAATA-TTGAGCCACC-ACCACCTGCTATGTTTGGTTTCGCTGCACCAGCTGGATACTAT 161 consensus_11218#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGAAAAAACAAAAACCCAC 132 *** * * * * * * * *** * * * * * consensus_11218#0 -GATTTTCCTCCCAAAAGGGGTGGAAGAGGATGGCCTCGGGGCAGGGGTGGATTTGGTGG 655 consensus_11218#1 CGATTTTCCTCCCAAAAGGGGTGGAAGAGGATGNCCTCGGGGCAGGGGTGGATTTGGTGG 141 consensus_11218#2 -GATTTTCCTCCCAAAAGAC-----AGAGNTTNNNTTTTNACCA---GTAAAGTTTGTA- 211 consensus_11218#3 TGAAGGGCCATTCCGTGGCC----AAGGGCAAATTCCCGCCCTATAAATACAATTCCCCC 188 ** ** * * ** * * * * ** consensus_11218#0 GCGTGGTCGGGGTCATGTGGGTCGTGGGCGAGGGAGGGGAGACCGTGGAAGTCGGAAGAT 715 consensus_11218#1 GCGTGGTCGGGGTCATGTGGGTCGTGGGCGAGGGAGGGGAGACCGTGGAAGTCGGAAGAT 201 consensus_11218#2 ---CAATGGGGTTCTGACANGANGGGGNTTNAAAAGCGCCCCCCCC-----TTGGAAAAT 263 consensus_11218#3 AATAGAGAGGCCTTTTACAA-TCAACGGCCCGACTGTTAAAACCCTGGGGATGGGAAAAT 247 ** * * * ** * **** ** consensus_11218#0 TTCTGCTGAAGACCTGGATGCTGACTTGGACAAGTACCATGCGGAAGGAATGCAAATGAG 775 consensus_11218#1 TTCTGCTGAAGACCTGGATGCTGACTTGGACAAGTACCATGCGGAAGGAATGCAAATGAG 261 consensus_11218#2 CT-TGCCGTACTTTTGA-----GACANANGNNGAGNTTATGCCAAGANAAAAAAANAAAA 317 consensus_11218#3 CCTTGGCTTTCCCCAACTTACCCCTTTTGCCACCTATCCCCT------------------ 289 ** consensus_11218#0 CTAGATGACCCTCACGCTTTGTTGCCTTGCCTTGATTGCATTAGGTAGAGACAGGGGGAC 835 consensus_11218#1 CTAGATGACCCTCACGCTTTGTTGCCTTGCCTTGATTGCATTAGGTAGAGACAGGGGGAC 321 consensus_11218#2 NTANAAAATTTT------------------------------------------------ 329 consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 AAACTAGTAGGCCTTCCTTGGTCTCCTTGTTAGTATTTTGTAGGGATAGATGCAGACCAA 895 consensus_11218#1 AAACTAGTAGGCCTTCCTTGGTCTCCTTGTTAGTATTTTGTAGGGATAGATGCAGACCAA 381 consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 CATATGTATACTTTGTTTAGATGGTGTCATAATTTTGAGCAGGGAATGGCTAAGCTTAAC 955 consensus_11218#1 CATATGTATACTTTGTTTAGATGGTGTCATAATTTTGAGCAGGGAATGGCTAAGCTTAAC 441 consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 CTGGTAGGTAGAAGCTAGCTCATAATATGTAACACGGAGGGAGCACAACTTTGAACTTTT 1015 consensus_11218#1 CTGGTAGGTAGAAGCTAGCTCATAATAAAAAAAAAAAAAAAA------------------ 483 consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 ATAGCTAGTGTTGAACTTTTAGCTAGTGTGGGACTGTGGGTTGATGGACACACAAGCAAA 1075 consensus_11218#1 ------------------------------------------------------------ consensus_11218#2 ------------------------------------------------------------ consensus_11218#3 ------------------------------------------------------------ consensus_11218#0 GCAAGCATGCAGCTTGGCAGCCTGGCAAGAGGAT 1109 consensus_11218#1 ---------------------------------- consensus_11218#2 ---------------------------------- consensus_11218#3 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||