These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1656 fasta sequence [AAGCAGTATGGTACAGAAGGAGGTGCTCAAGGAAGAGATCACCCGTAGGAACTCATATGTAGATGAGCTGAAGGACAAGCTGAATGCTGTTGAGATTGAGAACAGAAGGCTGAAAGTTGATTTGAATGGAGATTTTACAGTGTTGGGGTCATTGCAGAATGAAGTCAGTGCCCTAGAGAAACAAACCTTATCCCTTGCCAATGATTGTTTGCAATCAAATAAGCTCAGGATGGAGGAAAATGCATTATCAACTCAGGTTTTGAAGACCAATATGAGATCGAGTGGTGATCAGAATACAGTACGGACAGTAAAAGACATGGAGCTGCAGAAATTGCATGGGACCATCAAAGCACTCCAGAAGGTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCTGCAAGAAGCGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTTGATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTCTTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGAGAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTTGAGACCGCCGCAAAGTGAGTCGTTTGAGAGGGACAATTACAAAAGGCCTCCCTCTGAACTGATGGTCGTGAAAGAACTCAGCATTGACAAGCAAGAGTTACCAAGGTCAATCACCACGGAGCCGCACCAAGAGTGGAAGAACAAGGTAATCGAAAGATTGGCTTCTGATGCACAAAGGCTCAATGCCCTCCAATCCAGTATTCAGGAGCTCAAAACAAACACAGAGGCATCAGAAGGGCTCGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGATCGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGTCTTGATGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCACGGAGCGTGCGAGGAAGATGGCGGAGAAGATTGGGAGGCTTGAGGTGGAAATGCAGAAGGTGCAGGAAGCTCTGCTGAAATACGAGGAGCAGACTAGCACAAGAACATCAAAAACCATGCACCGGCGATCGAAAGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGGACAGTCGGAAGCAACAGCGATGTTCCCCATGTGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGCTTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGTTTCAGAACTGTAGCAAGTCATCTGCTGTTCATGGTTTCTTAGGTAAATAAGTGGACATGTAAGGATTGTAAATGGTAGTCATTGACAGTTTCTTTTTTTCTGAAACCATATGGACAATAACCATCTGTTATAAATTTTATTTCTTAGCTTGTAAAATTAAGGTCAACTTTATTTCTTATCATGTTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGGGTTATAATTAATTATTTGAAGAACCTTTTATGTGGAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK060224 [AAGCAGTATGGTACAGAAGGAGGTGCTCAAGGAAGAGATCACCCGTAGGAACTCATATGTAGATGAGCTGAAGGACAAGCTGAATGCTGTTGAGATTGAGAACAGAAGGCTGAAAGTTGATTTGAATGGAGATTTTACAGTGTTGGGGTCATTGCAGAATGAAGTCAGTGCCCTAGAGAAACAAACCTTATCCCTTGCCAATGATTGTTTGCAATCAAATAAGCTCAGGATGGAGGAAAATGCATTATCAACTCAGGTTTTGAAGACCAATATGAGATCGAGTGGTGATCAGAATACAGTACGGACAGTAAAAGACATGGAGCTGCAGAAATTGCATGGGACCATCAAAGCACTCCAGAAGGTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCTGCAAGAAGCGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTTGATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTCTTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGAGAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTTGAGACCGCCGCAAAGTGAGTCGTTTGAGAGGGACAATTACAAAAGGCCTCCCTCTGAACTGATGGTCGTGAAAGAACTCAGCATTGACAAGCAAGAGTTACCAAGGTCAATCACCACGGAGCCGCACCAAGAGTGGAAGAACAAGGTAATCGAAAGATTGGCTTCTGATGCACAAAGGCTCAATGCCCTCCAATCCAGTATTCAGGAGCTCAAAACAAACACAGAGGCATCAGAAGGGCTCGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGATCGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGTCTTGATGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCACGGAGCGTGCGAGGAAGATGGCGGAGAAGATTGGGAGGCTTGAGGTGGAAATGCAGAAGGTGCAGGAAGCTCTGCTGAAATACGAGGAGCAGACTAGCACAAGAACATCAAAAACCATGCACCGGCGATCGAAAGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGGACAGTCGGAAGCAACAGCGATGTTCCCCATGTGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGCTTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGTTTCAGAACTGTAGCAAGTCATCTGCTGTTCATGGTTTCTTAGGTAAATAAGTGGACATGTAAGGATTGTAAATGGTAGTCATTGACAGTTTCTTTTTTTCTGAAACCATATGGACAATAACCATCTGTTATAAATTTTATTTCTTAGCTTGTAAAATTAAGGTCAACTTTATTTCTTATCATGTTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGGGTTATAATTAATTATTTGAAGAACCTTTTACGTGG ] [+] EMBL AY224572 [ AATGAAGTCAGTGCCCTAGAGAAACAAACCTTATCCCTTGCCAATGATTGTTTGCAATCAAATAAGCTCAGGATGGAGGAAAATGCATTATCAACTCAGGTTTTGAAGACCAATATGAGATCGAGTGGTGATCAGAATACAGTACGGACAGTAAAAGACATGGAGCTGCAGAAATTGCATGGGACCATCAAAGCACTCCAGAAGGTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCTGCAAGAAGCGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTTGATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTCTTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGAGAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTTGAGACCGCCGCAAAGTGAGTCGTTTGAGAGGGACAATTACAAAAGGCCTCCCTCTGAACTGATGGTCGTGAAAGAACTCAGCATTGACAAGCAAGAGTTACCAAGGTCAATCACCACGGAGCCGCACCAAGAGTGGAAGAACAAGGTAATCGAAAGATTGGCTTCTGATGCACAAAGGCTCAATGCCCTCCAATCCAGTATTCAGGAGCTCAAAACAAACACAGAGGCATCAGAAGGGCTCGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGATCGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGTCTTGATGGGGACAACATTGACTTGAGGAGCAGACACCAGCG ] [+] EMBL OSR22352A [ GTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCTGCAAGAAGCGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTTGATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTCTTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGAGAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTTGAGACCGCCGCAAAGTGAGTCGTTTGAGANGGACAATTACAAAAGGCCTCCCTCT ] [+] EMBL OSR22271A [ GTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCTGCAAGAAGNGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTTGATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTCTTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGAGAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTTGAGACCGCCGCAAAGTGAGTCG ] [+] EMBL AU184418 [ AGCTGGTAGATTTTCTCTATGGTAGAAGGCGGGACAGTCGGAAGCAACAGCGATGTTCCCCATGTGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGCTTNTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGTTTCAGAACTGTAGCAAGTCATCTGCTGTTCATGGTTTNTTAGGTAAATAAGTGGACATGTAAGGATTGTAAATGGTAGTCATTGACAGTTTCTTTTTTTNTGAAACCATATGGNCAATAACCATCTGTTATAAATTTTATTTCTTAGCTTGTAAAATTAAGGTCAACTTTATTTCTTATCATGTTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGGGTTATAATTAATTATTTGAAGAACCTTTTATGTGGAAAAA ] [+] EMBL AU101659 [ CCGCTTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGTTTCAGAACTGTAGCAAGTCATCTGCTGTTCATGGTTTCTTAGGTAAATAAGTGGACATGTAAGGATTGTAAATGGTAGTCATTGACAGTTTCTTTTTTTCTGAAACCATATGGACAATAACCATCTGTTATAAATTTTATTTCTTAGCTTGTAAAATTAAGGTCAACTTTATTTCTTATCATGTTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGGGTTATAATTAATTATTTGAAGAACCTTTTATGTGGAAAA ] [-] EMBL CF325217 [ GTGGACATGTAAGGATTGTAAATGGTAGTCATTGACAGTTTCTTTTTTTCTGAAACCATATGGACAATAACCATCTGTTATAAATTTTATTTCTTAGCTTGTAAAATTAAGGTCAACTTTATTTCTTATCATGTTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGGGTTATAATTAATTATTTGAAGAACCTTTTATGTGGAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [GAGCTCAAAACANACACAGAGGCGNCAGAAGGGCTCGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGATCGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGNCTTGATGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCATGGAGCGNGCGAGGAAGATGGCGGAGAAGATTGNGAGGCTTGAGGTGGAAATGCANAGGGTGCAGGAAGCTCTGCTGAAATACGAGGAGGAGCAGACTATCACAAGAACATCAAAAACCATGCACCGGCGATCGAAAGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGNACAGTCGGAAACAAACAGCGATGTTCCCCATGNGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGCTTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGNTTCAGAACTGTAGCAAGNCATCTGCCTGNNCATGATTTCNTAGGTAAATAACTGGACATGTAAAGGATTGTNAATGGNAAGTCCATTCGACAGTTTNCNTTTTTTTCNTGAAACCNTATGGGCNAATAACCNTTCTNGGTATAAATTTTTATTTTTCCTTAACTTTGNAAAAATTAAAGGNCAACCTTTNTTTCNTAATAAT] [+] EMBL CB096530 [GAGCTCAAAACANACACAGAGGCGNCAGAAGGGCTCGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGATCGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGNCTTGATGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCATGGAGCGNGCGAGGAAGATGGCGGAGAAGATTGNGAGGCTTGAGGTGGAAATGCANAGGGTGCAGGAAGCTCTGCTGAAATACGAGGAGGAGCAGACTATCACAAGAACATCAAAAACCATGCACCGGCGATCGAAAGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGNACAGTCGGAAACAAACAGCGATGTTCCCCATGNGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGCTTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGNTTCAGAACTGTAGCAAGNCATCTGCCTGNNCATGATTTCNTAGGTAAATAACTGGACATGTAAAGGATTGTNAATGGNAAGTCCATTCGACAGTTTNCNTTTTTTTCNTGAAACCNTATGGGCNAATAACCNTTCTNGGTATAAATTTTTATTTTTCCTTAACTTTGNAAAAATTAAAGGNCAACCTTTNTTTCNTAATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11222#0 AAGCAGTATGGTACAGAAGGAGGTGCTCAAGGAAGAGATCACCCGTAGGAACTCATATGT 60 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 AGATGAGCTGAAGGACAAGCTGAATGCTGTTGAGATTGAGAACAGAAGGCTGAAAGTTGA 120 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 TTTGAATGGAGATTTTACAGTGTTGGGGTCATTGCAGAATGAAGTCAGTGCCCTAGAGAA 180 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 ACAAACCTTATCCCTTGCCAATGATTGTTTGCAATCAAATAAGCTCAGGATGGAGGAAAA 240 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 TGCATTATCAACTCAGGTTTTGAAGACCAATATGAGATCGAGTGGTGATCAGAATACAGT 300 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 ACGGACAGTAAAAGACATGGAGCTGCAGAAATTGCATGGGACCATCAAAGCACTCCAGAA 360 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 GGTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCT 420 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 GCAAGAAGCGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTT 480 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 GATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTC 540 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 TTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGA 600 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 GAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTT 660 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 GAGACCGCCGCAAAGTGAGTCGTTTGAGAGGGACAATTACAAAAGGCCTCCCTCTGAACT 720 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 GATGGTCGTGAAAGAACTCAGCATTGACAAGCAAGAGTTACCAAGGTCAATCACCACGGA 780 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 GCCGCACCAAGAGTGGAAGAACAAGGTAATCGAAAGATTGGCTTCTGATGCACAAAGGCT 840 consensus_11222#1 ------------------------------------------------------------ consensus_11222#0 CAATGCCCTCCAATCCAGTATTCAGGAGCTCAAAACAAACACAGAGGCATCAGAAGGGCT 900 consensus_11222#1 -------------------------GAGCTCAAAACANACACAGAGGCGNCAGAAGGGCT 35 ************ ********** ********** consensus_11222#0 CGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGAT 960 consensus_11222#1 CGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGAT 95 ************************************************************ consensus_11222#0 CGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGTCTTGA 1020 consensus_11222#1 CGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGNCTTGA 155 ****************************************************** ***** consensus_11222#0 TGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCACGGAGCGTGCGAGGAA 1080 consensus_11222#1 TGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCATGGAGCGNGCGAGGAA 215 ******************************************** ****** ******** consensus_11222#0 GATGGCGGAGAAGATTGGGAGGCTTGAGGTGGAAATGCAGAAGGTGCAGGAAGCTCTGCT 1140 consensus_11222#1 GATGGCGGAGAAGATTGNGAGGCTTGAGGTGGAAATGCANAGGGTGCAGGAAGCTCTGCT 275 ***************** ********************* * ****************** consensus_11222#0 GAAATACGAGGAG---CAGACTAGCACAAGAACATCAAAAACCATGCACCGGCGATCGAA 1197 consensus_11222#1 GAAATACGAGGAGGAGCAGACTATCACAAGAACATCAAAAACCATGCACCGGCGATCGAA 335 ************* ******* ************************************ consensus_11222#0 AGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGGACAGTCGGAAGCAA-CAGCGAT 1256 consensus_11222#1 AGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGNACAGTCGGAAACAAACAGCGAT 395 ************************************* ********** *** ******* consensus_11222#0 GTTCCCCATGTGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGC 1316 consensus_11222#1 GTTCCCCATGNGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGC 455 ********** ************************************************* consensus_11222#0 TTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGTTTCAGAACTGTAGCAAGTCAT 1376 consensus_11222#1 TTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGNTTCAGAACTGTAGCAAGNCAT 515 ************************************** ***************** *** consensus_11222#0 CTGC-TGTTCATGGTTTCTTAGGTAAATAAGTGGACATGTAA-GGATTGTAAATGGTAG- 1433 consensus_11222#1 CTGCCTGNNCATGATTTCNTAGGTAAATAACTGGACATGTAAAGGATTGTNAATGGNAAG 575 **** ** **** **** *********** *********** ******* ***** * consensus_11222#0 -TCATT-GACAGTTTCTTTTTTT---CTGAAACCATATGGACAA-TAACCATC--TGTTA 1485 consensus_11222#1 TCCATTCGACAGTTTNCNTTTTTTTCNTGAAACCNTATGGGCNAATAACCNTTCTNGGTA 635 **** ******** ***** ******* ***** * * ***** * * ** consensus_11222#0 TAAATTTTA----TTTCTTAGCTT-GTAAAATT--AAGGTCAACTTTATTTCTTATCATG 1538 consensus_11222#1 TAAATTTTTATTTTTCCTTAACTTTGNAAAAATTAAAGGNCAACCTT-TNTTTCNTAATA 694 ******** ** **** *** * **** * **** **** ** * * * * ** consensus_11222#0 TTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGG 1598 consensus_11222#1 AT---------------------------------------------------------- 696 * consensus_11222#0 GTTATAATTAATTATTTGAAGAACCTTTTATGTGGAAAAAAAAAAAAAAAAAAAAAAA 1656 consensus_11222#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||