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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1656 fasta sequence
[AAGCAGTATGGTACAGAAGGAGGTGCTCAAGGAAGAGATCACCCGTAGGAACTCATATGTAGATGAGCTGAAGGACAAGCTGAATGCTGTTGAGATTGAGAACAGAAGGCTGAAAGTTGATTTGAATGGAGATTTTACAGTGTTGGGGTCATTGCAGAATGAAGTCAGTGCCCTAGAGAAACAAACCTTATCCCTTGCCAATGATTGTTTGCAATCAAATAAGCTCAGGATGGAGGAAAATGCATTATCAACTCAGGTTTTGAAGACCAATATGAGATCGAGTGGTGATCAGAATACAGTACGGACAGTAAAAGACATGGAGCTGCAGAAATTGCATGGGACCATCAAAGCACTCCAGAAGGTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCTGCAAGAAGCGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTTGATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTCTTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGAGAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTTGAGACCGCCGCAAAGTGAGTCGTTTGAGAGGGACAATTACAAAAGGCCTCCCTCTGAACTGATGGTCGTGAAAGAACTCAGCATTGACAAGCAAGAGTTACCAAGGTCAATCACCACGGAGCCGCACCAAGAGTGGAAGAACAAGGTAATCGAAAGATTGGCTTCTGATGCACAAAGGCTCAATGCCCTCCAATCCAGTATTCAGGAGCTCAAAACAAACACAGAGGCATCAGAAGGGCTCGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGATCGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGTCTTGATGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCACGGAGCGTGCGAGGAAGATGGCGGAGAAGATTGGGAGGCTTGAGGTGGAAATGCAGAAGGTGCAGGAAGCTCTGCTGAAATACGAGGAGCAGACTAGCACAAGAACATCAAAAACCATGCACCGGCGATCGAAAGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGGACAGTCGGAAGCAACAGCGATGTTCCCCATGTGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGCTTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGTTTCAGAACTGTAGCAAGTCATCTGCTGTTCATGGTTTCTTAGGTAAATAAGTGGACATGTAAGGATTGTAAATGGTAGTCATTGACAGTTTCTTTTTTTCTGAAACCATATGGACAATAACCATCTGTTATAAATTTTATTTCTTAGCTTGTAAAATTAAGGTCAACTTTATTTCTTATCATGTTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGGGTTATAATTAATTATTTGAAGAACCTTTTATGTGGAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK060224 [AAGCAGTATGGTACAGAAGGAGGTGCTCAAGGAAGAGATCACCCGTAGGAACTCATATGTAGATGAGCTGAAGGACAAGCTGAATGCTGTTGAGATTGAGAACAGAAGGCTGAAAGTTGATTTGAATGGAGATTTTACAGTGTTGGGGTCATTGCAGAATGAAGTCAGTGCCCTAGAGAAACAAACCTTATCCCTTGCCAATGATTGTTTGCAATCAAATAAGCTCAGGATGGAGGAAAATGCATTATCAACTCAGGTTTTGAAGACCAATATGAGATCGAGTGGTGATCAGAATACAGTACGGACAGTAAAAGACATGGAGCTGCAGAAATTGCATGGGACCATCAAAGCACTCCAGAAGGTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCTGCAAGAAGCGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTTGATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTCTTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGAGAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTTGAGACCGCCGCAAAGTGAGTCGTTTGAGAGGGACAATTACAAAAGGCCTCCCTCTGAACTGATGGTCGTGAAAGAACTCAGCATTGACAAGCAAGAGTTACCAAGGTCAATCACCACGGAGCCGCACCAAGAGTGGAAGAACAAGGTAATCGAAAGATTGGCTTCTGATGCACAAAGGCTCAATGCCCTCCAATCCAGTATTCAGGAGCTCAAAACAAACACAGAGGCATCAGAAGGGCTCGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGATCGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGTCTTGATGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCACGGAGCGTGCGAGGAAGATGGCGGAGAAGATTGGGAGGCTTGAGGTGGAAATGCAGAAGGTGCAGGAAGCTCTGCTGAAATACGAGGAGCAGACTAGCACAAGAACATCAAAAACCATGCACCGGCGATCGAAAGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGGACAGTCGGAAGCAACAGCGATGTTCCCCATGTGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGCTTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGTTTCAGAACTGTAGCAAGTCATCTGCTGTTCATGGTTTCTTAGGTAAATAAGTGGACATGTAAGGATTGTAAATGGTAGTCATTGACAGTTTCTTTTTTTCTGAAACCATATGGACAATAACCATCTGTTATAAATTTTATTTCTTAGCTTGTAAAATTAAGGTCAACTTTATTTCTTATCATGTTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGGGTTATAATTAATTATTTGAAGAACCTTTTACGTGG ]
[+] EMBL AY224572 [ AATGAAGTCAGTGCCCTAGAGAAACAAACCTTATCCCTTGCCAATGATTGTTTGCAATCAAATAAGCTCAGGATGGAGGAAAATGCATTATCAACTCAGGTTTTGAAGACCAATATGAGATCGAGTGGTGATCAGAATACAGTACGGACAGTAAAAGACATGGAGCTGCAGAAATTGCATGGGACCATCAAAGCACTCCAGAAGGTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCTGCAAGAAGCGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTTGATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTCTTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGAGAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTTGAGACCGCCGCAAAGTGAGTCGTTTGAGAGGGACAATTACAAAAGGCCTCCCTCTGAACTGATGGTCGTGAAAGAACTCAGCATTGACAAGCAAGAGTTACCAAGGTCAATCACCACGGAGCCGCACCAAGAGTGGAAGAACAAGGTAATCGAAAGATTGGCTTCTGATGCACAAAGGCTCAATGCCCTCCAATCCAGTATTCAGGAGCTCAAAACAAACACAGAGGCATCAGAAGGGCTCGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGATCGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGTCTTGATGGGGACAACATTGACTTGAGGAGCAGACACCAGCG ]
[+] EMBL OSR22352A [ GTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCTGCAAGAAGCGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTTGATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTCTTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGAGAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTTGAGACCGCCGCAAAGTGAGTCGTTTGAGANGGACAATTACAAAAGGCCTCCCTCT ]
[+] EMBL OSR22271A [ GTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCTGCAAGAAGNGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTTGATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTCTTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGAGAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTTGAGACCGCCGCAAAGTGAGTCG ]
[+] EMBL AU184418 [ AGCTGGTAGATTTTCTCTATGGTAGAAGGCGGGACAGTCGGAAGCAACAGCGATGTTCCCCATGTGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGCTTNTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGTTTCAGAACTGTAGCAAGTCATCTGCTGTTCATGGTTTNTTAGGTAAATAAGTGGACATGTAAGGATTGTAAATGGTAGTCATTGACAGTTTCTTTTTTTNTGAAACCATATGGNCAATAACCATCTGTTATAAATTTTATTTCTTAGCTTGTAAAATTAAGGTCAACTTTATTTCTTATCATGTTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGGGTTATAATTAATTATTTGAAGAACCTTTTATGTGGAAAAA ]
[+] EMBL AU101659 [ CCGCTTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGTTTCAGAACTGTAGCAAGTCATCTGCTGTTCATGGTTTCTTAGGTAAATAAGTGGACATGTAAGGATTGTAAATGGTAGTCATTGACAGTTTCTTTTTTTCTGAAACCATATGGACAATAACCATCTGTTATAAATTTTATTTCTTAGCTTGTAAAATTAAGGTCAACTTTATTTCTTATCATGTTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGGGTTATAATTAATTATTTGAAGAACCTTTTATGTGGAAAA ]
[-] EMBL CF325217 [ GTGGACATGTAAGGATTGTAAATGGTAGTCATTGACAGTTTCTTTTTTTCTGAAACCATATGGACAATAACCATCTGTTATAAATTTTATTTCTTAGCTTGTAAAATTAAGGTCAACTTTATTTCTTATCATGTTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGGGTTATAATTAATTATTTGAAGAACCTTTTATGTGGAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[GAGCTCAAAACANACACAGAGGCGNCAGAAGGGCTCGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGATCGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGNCTTGATGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCATGGAGCGNGCGAGGAAGATGGCGGAGAAGATTGNGAGGCTTGAGGTGGAAATGCANAGGGTGCAGGAAGCTCTGCTGAAATACGAGGAGGAGCAGACTATCACAAGAACATCAAAAACCATGCACCGGCGATCGAAAGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGNACAGTCGGAAACAAACAGCGATGTTCCCCATGNGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGCTTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGNTTCAGAACTGTAGCAAGNCATCTGCCTGNNCATGATTTCNTAGGTAAATAACTGGACATGTAAAGGATTGTNAATGGNAAGTCCATTCGACAGTTTNCNTTTTTTTCNTGAAACCNTATGGGCNAATAACCNTTCTNGGTATAAATTTTTATTTTTCCTTAACTTTGNAAAAATTAAAGGNCAACCTTTNTTTCNTAATAAT]
[+] EMBL CB096530 [GAGCTCAAAACANACACAGAGGCGNCAGAAGGGCTCGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGATCGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGNCTTGATGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCATGGAGCGNGCGAGGAAGATGGCGGAGAAGATTGNGAGGCTTGAGGTGGAAATGCANAGGGTGCAGGAAGCTCTGCTGAAATACGAGGAGGAGCAGACTATCACAAGAACATCAAAAACCATGCACCGGCGATCGAAAGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGNACAGTCGGAAACAAACAGCGATGTTCCCCATGNGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGCTTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGNTTCAGAACTGTAGCAAGNCATCTGCCTGNNCATGATTTCNTAGGTAAATAACTGGACATGTAAAGGATTGTNAATGGNAAGTCCATTCGACAGTTTNCNTTTTTTTCNTGAAACCNTATGGGCNAATAACCNTTCTNGGTATAAATTTTTATTTTTCCTTAACTTTGNAAAAATTAAAGGNCAACCTTTNTTTCNTAATAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11222#0 AAGCAGTATGGTACAGAAGGAGGTGCTCAAGGAAGAGATCACCCGTAGGAACTCATATGT 60
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 AGATGAGCTGAAGGACAAGCTGAATGCTGTTGAGATTGAGAACAGAAGGCTGAAAGTTGA 120
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 TTTGAATGGAGATTTTACAGTGTTGGGGTCATTGCAGAATGAAGTCAGTGCCCTAGAGAA 180
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 ACAAACCTTATCCCTTGCCAATGATTGTTTGCAATCAAATAAGCTCAGGATGGAGGAAAA 240
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 TGCATTATCAACTCAGGTTTTGAAGACCAATATGAGATCGAGTGGTGATCAGAATACAGT 300
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 ACGGACAGTAAAAGACATGGAGCTGCAGAAATTGCATGGGACCATCAAAGCACTCCAGAA 360
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 GGTGGTTACGGATACAGCCGTCCTTCTTGATCAAGAGAGGCTTGATTTCAATGCCAATCT 420
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 GCAAGAAGCGAGGAAGCAGATTGAGGTGCTGAAGCTGAAGGAGATTTTGGATGATGACTT 480
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 GATTGAAATGAATTATGAGCAAATGCTGAAAGACATTCAGCTTGACCTCATCCAAATTTC 540
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 TTCTGGTAATAAAACCGGTTCCCTTGGTCAGGCCAATAAAACTGTAGCACAGGCAAATGA 600
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 GAAGATGCTTGACTCTCATGGCATCGTTGGAGCTAGCAGTAGCCATGTACGCAATGATTT 660
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 GAGACCGCCGCAAAGTGAGTCGTTTGAGAGGGACAATTACAAAAGGCCTCCCTCTGAACT 720
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 GATGGTCGTGAAAGAACTCAGCATTGACAAGCAAGAGTTACCAAGGTCAATCACCACGGA 780
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 GCCGCACCAAGAGTGGAAGAACAAGGTAATCGAAAGATTGGCTTCTGATGCACAAAGGCT 840
consensus_11222#1 ------------------------------------------------------------
consensus_11222#0 CAATGCCCTCCAATCCAGTATTCAGGAGCTCAAAACAAACACAGAGGCATCAGAAGGGCT 900
consensus_11222#1 -------------------------GAGCTCAAAACANACACAGAGGCGNCAGAAGGGCT 35
************ ********** **********
consensus_11222#0 CGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGAT 960
consensus_11222#1 CGAGCTCGAGAGCGTTAGGTACCAAATAAGAGAAGCTGAGGGCTTCATCACTCAGCTGAT 95
************************************************************
consensus_11222#0 CGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGTCTTGA 1020
consensus_11222#1 CGATAGCAACGGTAAACTGTCCAAGAAGGCTGAGGAGTTCACATCTGAAGATGGNCTTGA 155
****************************************************** *****
consensus_11222#0 TGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCACGGAGCGTGCGAGGAA 1080
consensus_11222#1 TGGGGACAACATTGACTTGAGGAGCAGACACCAGCGCAAGATCATGGAGCGNGCGAGGAA 215
******************************************** ****** ********
consensus_11222#0 GATGGCGGAGAAGATTGGGAGGCTTGAGGTGGAAATGCAGAAGGTGCAGGAAGCTCTGCT 1140
consensus_11222#1 GATGGCGGAGAAGATTGNGAGGCTTGAGGTGGAAATGCANAGGGTGCAGGAAGCTCTGCT 275
***************** ********************* * ******************
consensus_11222#0 GAAATACGAGGAG---CAGACTAGCACAAGAACATCAAAAACCATGCACCGGCGATCGAA 1197
consensus_11222#1 GAAATACGAGGAGGAGCAGACTATCACAAGAACATCAAAAACCATGCACCGGCGATCGAA 335
************* ******* ************************************
consensus_11222#0 AGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGGACAGTCGGAAGCAA-CAGCGAT 1256
consensus_11222#1 AGTGCAGCTGGTAGATTTTCTCTATGGTAGAAGGCGGNACAGTCGGAAACAAACAGCGAT 395
************************************* ********** *** *******
consensus_11222#0 GTTCCCCATGTGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGC 1316
consensus_11222#1 GTTCCCCATGNGGTTGCATGAAAGCAAATGCCATTGATGACTAACTCGCCTTCATGCCGC 455
********** *************************************************
consensus_11222#0 TTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGTTTCAGAACTGTAGCAAGTCAT 1376
consensus_11222#1 TTCTTTTTTAAGGCAAAATGGAAGGCTAAGCTTTTCAGNTTCAGAACTGTAGCAAGNCAT 515
************************************** ***************** ***
consensus_11222#0 CTGC-TGTTCATGGTTTCTTAGGTAAATAAGTGGACATGTAA-GGATTGTAAATGGTAG- 1433
consensus_11222#1 CTGCCTGNNCATGATTTCNTAGGTAAATAACTGGACATGTAAAGGATTGTNAATGGNAAG 575
**** ** **** **** *********** *********** ******* ***** *
consensus_11222#0 -TCATT-GACAGTTTCTTTTTTT---CTGAAACCATATGGACAA-TAACCATC--TGTTA 1485
consensus_11222#1 TCCATTCGACAGTTTNCNTTTTTTTCNTGAAACCNTATGGGCNAATAACCNTTCTNGGTA 635
**** ******** ***** ******* ***** * * ***** * * **
consensus_11222#0 TAAATTTTA----TTTCTTAGCTT-GTAAAATT--AAGGTCAACTTTATTTCTTATCATG 1538
consensus_11222#1 TAAATTTTTATTTTTCCTTAACTTTGNAAAAATTAAAGGNCAACCTT-TNTTTCNTAATA 694
******** ** **** *** * **** * **** **** ** * * * * **
consensus_11222#0 TTCCATGATATGTGTAAAGAGAACATGACAATGTTTTTCTTTTTTCTGTAAGAAAGACGG 1598
consensus_11222#1 AT---------------------------------------------------------- 696
*
consensus_11222#0 GTTATAATTAATTATTTGAAGAACCTTTTATGTGGAAAAAAAAAAAAAAAAAAAAAAA 1656
consensus_11222#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||