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Oryza sativa
cluster # 11223 cluster # 11223       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11223#0 length = 1296 sequences # 4  
consensus_11223#1 length = 813 sequences # 2  
consensus_11223#2 length = 686 sequences # 1  
consensus_11223#3 length = 323 sequences # 1  

consensusID : consensus_11223#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1296
fasta sequence
                              [GGCAGTCCACACCACCCGAATCCCCTCCACTCCCCCGCGGTCACCGGCGGCGCCGGCGGCGAGCTCTCGCCGACGCCGATGACCACCGCGCGGTTCGTCTCCCCCTCCCTCTCGCGCGTGTCCCCCTCGCCGGCCGGCCGAGTCTCCGGGTCGTCGTGGTTGTCCAGGGCTGGGGTCGCCCTCCCCGCTCGGCCGCACGGTCTCTCGCTCCACCTGAGGCCGCCTGCTATGGCCTCCGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACGAAGACATCGCTTTGGCAATTGGAACGGCACTACTTGAAGCACTTGGAGATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGGATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACTTCACATCCGTCAGCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTGCTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGCCGACGCGGCACTGTCCCCAGCTCAAAAGGTGTGTTGTCAAGGTCATAGTGTTGCAGGTTTGGAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATGGAATGGCCTCTACAGCTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATAACAGAACATGAAGCCATTGCTAACTAGATCACCAAAAAAGGAACAAATTTAGCACTGTTCTCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGCCGTTATTGCAATTTTGGATGCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACGGCGTGTCTAGCAGCTCAGTTTCACTCTGTATGAGTTCAGAGTTGGTCATGTTGCTGAACCTCTGTATTTTCAAGGGAATAAATAAGTTTTGCACCTACGTTTCT]

[+] EMBL AK073351             [GGCAGTCCACACCACCCGAATCCCCTCCACTCCCCCGCGGTCACCGGCGGCGCCGGCGGCGAGCTCTCGCCGACGCCGATGACCACCGCGCGGTTCGTCTCCCCCTCCCTCTCGCGCGTGTCCCCCTCGCCGGCCGGCCGAGTCTCCGGGTCGTCGTGGTTGTCCAGGGCTGGGGTCGCCCTCCCCGCTCGGCCGCACGGTCTCTCGCTCCACCTGAGGCCGCCTGCTATGGCCTCCGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACGAAGACATCGCTTTGGCAATTGGAACGGCACTACTTGAAGCACTTGGAGATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGGATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACTTCACATCCGTCAGCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTGCTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGCCGACGCGGCACTGTCCCCAGCTCAAAAGGTGTGTTGTCAAGGTCATAGTGTTGCAGGTTTGGAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATGGAATGGCCTCTACAGCTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATAACAGAACATGAAGCCATTGCTAACTAGATCACCAAAAAAGGAACAAATTTAGCACTGTTCTCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGCCGTTATTGCAATTTTGGATGCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACGGCGTGTCTAGCAGCTCAGTTTCACTCTGTATGAGTTCAGAGTTGGTCATGTTGCTGAACCTCTGTATTTTCAAGGGAATAAATAAGTTTTGCACCTACGTTTCT]
[+] EMBL CB654521             [                       CCTCCACTCCCCCGCGGTCACCGGCGGCGCCGGCGGCGAGCTCTCGCCGACGCCGATGACCACCGCGCGGTTCGTCTCCCCCTCCCTCTCGCGCGTGTCCCCCTCGCCGGCCGGCCGAGTCTCCGGGTCGTCGTGGTTGTCCAGGGCTGGGGTCGCCCTCCCCGCTCGGCCGCACGGTCTCTCGCTCCACCTGAGGCCGCCTGCTATGGCCTCCGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACGAAGACATCGCTTTGGCAATTGGAACGGCACTACTTGAAGCACTTGGAGATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGGATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB654522             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTTGGCAATTGGAACGGCACTACTTGAAGCACTTGGAGATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGGATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACTTCACATCCGTCAGCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTGCTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGCCGACGCGGCACTGTCCCCAGCTCAAAAGGTGTGTTGTCAAGGTCATAGTGTTGCAGGTTTGGAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATGGAATGGCCTCTACAGCTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATAACAGAACATGAAGCCATTGCTAACTAGATCACCAAAAAAGGAACAAATTTAGCACTGTTCTCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGCCGTTATTGCAATTTTGGATGCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACGGCGTGTCTAGCAGCTCAGTTTCACTCTGTATGAGTTCAGAGTTGGTCATGTTGCTGAACCTGGGTATTTTCAAGGGAATAAATAAGT                 ]
[-] EMBL CF325158             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATGACTTGCGCCGACGCGGCACTGTCCCCAGCTCAAAAGGTGTGTTGTCAAGGTCATAGTGTTGCAGGTTTGGAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATGGAATGGCCTCTACAGCTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATAACAGAACATGAAGCCATTGCTAACTAGATCACCAAAAAAGGAACAAATTTAGCACTGTTCTCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGCCGTTATTGCAATTTTGGATGCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACGGCAT ACTAACAGCTCAGTTTCACTCTGTATGAGTTCAGAGTTGGTCATGTTGCTGAACCTCTGTATTTTCAAGGGAATAAATAAGTTTTG             ]


>consensus_11223#0 GGCAGTCCACACCACCCGAATCCCCTCCACTCCCCCGCGGTCACCGGCGGCGCCGGCGGC GAGCTCTCGCCGACGCCGATGACCACCGCGCGGTTCGTCTCCCCCTCCCTCTCGCGCGTG TCCCCCTCGCCGGCCGGCCGAGTCTCCGGGTCGTCGTGGTTGTCCAGGGCTGGGGTCGCC CTCCCCGCTCGGCCGCACGGTCTCTCGCTCCACCTGAGGCCGCCTGCTATGGCCTCCGCC GCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGCGTTGTCCAGGATA GGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGC ACTGGTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATCAACTG GCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGAC CATCACTCAAACGAAGACATCGCTTTGGCAATTGGAACGGCACTACTTGAAGCACTTGGA GATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTT GAGGTTATACTGGATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACT GAGAGAGTTGGCACATACGATACTCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAAT ACATCTGGGATGACACTTCACATCCGTCAGCTTGCTGGAAAAAACTCACACCATATTATT GAGGCAACTTTCAAAGCATTTGCTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGC CGACGCGGCACTGTCCCCAGCTCAAAAGGTGTGTTGTCAAGGTCATAGTGTTGCAGGTTT GGAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAAT GGAATGGCCTCTACAGCTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGAT AACAGAACATGAAGCCATTGCTAACTAGATCACCAAAAAAGGAACAAATTTAGCACTGTT CTCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGCCGTTATTG CAATTTTGGATGCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACGGCGTGTCT AGCAGCTCAGTTTCACTCTGTATGAGTTCAGAGTTGGTCATGTTGCTGAACCTCTGTATT TTCAAGGGAATAAATAAGTTTTGCACCTACGTTTCT



consensusID : consensus_11223#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 813
fasta sequence
                              [ACCCGAATCCCCTCCACTCCCCCGCGGTCACCGGCGGCGCCGGCGGCGAGCTCTCGCCGACGCCGATGACCACCGCGCGGTTCGTCTCCCCCTCCCTCTCGCGCGTGTCCCCCTCGCCGGCCGGCCGAGTCTCCGGGTCGTCGTGGTTGTCCAGGGCTGGGGTCGCCCTCCCCGCTCGGCCGCACGGTCTCTCGCTCCACCTGAGGCCGCCTGCTATGGCCTCCGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACGAAGACATCGCTTGGCAATTGGAACGGCACTACTTGAAGCACTTGGAGATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGGATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGATCCAATATGGCTTATCCTTAATCGTCTAATGTGACATGGCTATTGNGTTGTCTTGCATCATTCGTATTCATCCTCTGACGTTCTTCCTATCATTGGACAATTCTTTTTGATGAAATATTTAAATAATACTTCTTTTTTT]

[+] EMBL CB672673             [ACCCGAATCCCCTCCACTCCCCCGCGGTCACCGGCGGCGCCGGCGGCGAGCTCTCGCCGACGCCGATGACCACCGCGCGGTTCGTCTCCCCCTCCCTCTCGCGCGTGTCCCCCTCGCCGGCCGGCCGAGTCTCCGGGTCGTCGTGGTTGTCCAGGGCTGGGGTCGCCCTCCCCGCTCGGCCGCACGGTCTCTCGCTCCACCTGAGGCCGCCTGCTATGGCCTCCGCCGCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACGAAGACATCGCTTGGCAATTGGAACGGCACTACTTGAAGCACTTGGAGATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGGATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGATCCAATATGGCTTATCCTTAATCGTCTAATGTGACATGGCTATTGNGTTGTCTTGCATCATTCGTATTCATCCTCTGACGTTCTTCCTATCATTGGACAATTCTTTTTGATGAAATATTTAAATAATACTTCTTTTTTT]
[+] EMBL AU162679             [          CCTCCACNCCCCCGCGGTCACCGGCGGCGCCGNCGGCGAGCTCTCGCCGACGCCGATGACCACCGCGCGGTTCGTCTCCCCCTCCCTCTCGCGCGTGTCCCCNTCGCCGGCCGGCCGAGTCNCCGGGTCGTCGTGGTTGTCCAGGGCTGGGGTCGCCCTCNCCGCTCGGCNGCACGGTCTCTCGCTCCACCTGANGCCGCCTGCTATAGCCTCCGCCGCCGCCGCCGGGAACAGCTCTCCTTCCGCNCCGGAGGACTCCACAGCGTTGTCCAGGATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCANTGGTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCAC                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_11223#1 ACCCGAATCCCCTCCACTCCCCCGCGGTCACCGGCGGCGCCGGCGGCGAGCTCTCGCCGA CGCCGATGACCACCGCGCGGTTCGTCTCCCCCTCCCTCTCGCGCGTGTCCCCCTCGCCGG CCGGCCGAGTCTCCGGGTCGTCGTGGTTGTCCAGGGCTGGGGTCGCCCTCCCCGCTCGGC CGCACGGTCTCTCGCTCCACCTGAGGCCGCCTGCTATGGCCTCCGCCGCCGCCGCCGGGA ACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGCGTTGTCCAGGATAGGAGAAGTCAAGA GGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCG ATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATCAACTGGCATCTCATGGGC TCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACG AAGACATCGCTTGGCAATTGGAACGGCACTACTTGAAGCACTTGGAGATCGAAAAGGAAT TAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGGA TCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAGAGAGTTGGCAC ATACGATACTCAGATCCAATATGGCTTATCCTTAATCGTCTAATGTGACATGGCTATTGN GTTGTCTTGCATCATTCGTATTCATCCTCTGACGTTCTTCCTATCATTGGACAATTCTTT TTGATGAAATATTTAAATAATACTTCTTTTTTT



consensusID : consensus_11223#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence
                              [CCATGCTATCTTTTCAGTCATGTATACTCCTGCTATCATCTTAGACAGCTATTGATTTATTCACTTTGATGACCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACTTCACATCCGTCAGCTTGCTGGAAAAAACTCCCCCCATATTATTGAGGCAACTTTCAAAGCATTTGTTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGCCGACGCGGCACTGTCCCCAGCTCAAAAGGTGTGTTGTCAAGGTCATAGTGTTGCAGGTTTGGAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATGGAATGGCCTCTACAGCTCCTGGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATAACAGACCATGAAGCCATTGCTAACTAGATCCCCAAAAAAGGAACAAATTTAGCCCTGTTCTCATGATCTATTTTTCTGTACCATTTAGCATTCGAAATAAACATGTCCGGCCGTTATTGCAATTTTGGATGCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACGGCGTGTTTAGCAGCTCAGTTTCACTCTGTATGAGTTCAGAGTTGGTCATGTTGCTGACCCTCTGTATTTTCAAGGGAATAAATAAGTTTTGCCCCTGGGTTTCTG]

[-] EMBL CB672674             [CCATGCTATCTTTTCAGTCATGTATACTCCTGCTATCATCTTAGACAGCTATTGATTTATTCACTTTGATGACCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGATGACACTTCACATCCGTCAGCTTGCTGGAAAAAACTCCCCCCATATTATTGAGGCAACTTTCAAAGCATTTGTTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGCCGACGCGGCACTGTCCCCAGCTCAAAAGGTGTGTTGTCAAGGTCATAGTGTTGCAGGTTTGGAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATGGAATGGCCTCTACAGCTCCTGGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATAACAGACCATGAAGCCATTGCTAACTAGATCCCCAAAAAAGGAACAAATTTAGCCCTGTTCTCATGATCTATTTTTCTGTACCATTTAGCATTCGAAATAAACATGTCCGGCCGTTATTGCAATTTTGGATGCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACGGCGTGTTTAGCAGCTCAGTTTCACTCTGTATGAGTTCAGAGTTGGTCATGTTGCTGACCCTCTGTATTTTCAAGGGAATAAATAAGTTTTGCCCCTGGGTTTCTG]


>consensus_11223#2 CCATGCTATCTTTTCAGTCATGTATACTCCTGCTATCATCTTAGACAGCTATTGATTTAT TCACTTTGATGACCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAATACATCTGGGAT GACACTTCACATCCGTCAGCTTGCTGGAAAAAACTCCCCCCATATTATTGAGGCAACTTT CAAAGCATTTGTTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGCCGACGCGGCAC TGTCCCCAGCTCAAAAGGTGTGTTGTCAAGGTCATAGTGTTGCAGGTTTGGAAAACAAGG GGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATGGAATGGCCTC TACAGCTCCTGGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATAACAGACCATG AAGCCATTGCTAACTAGATCCCCAAAAAAGGAACAAATTTAGCCCTGTTCTCATGATCTA TTTTTCTGTACCATTTAGCATTCGAAATAAACATGTCCGGCCGTTATTGCAATTTTGGAT GCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACGGCGTGTTTAGCAGCTCAGT TTCACTCTGTATGAGTTCAGAGTTGGTCATGTTGCTGACCCTCTGTATTTTCAAGGGAAT AAATAAGTTTTGCCCCTGGGTTTCTG



consensusID : consensus_11223#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence
                              [CGCGGCCATTGTCCCCAGCTCAAAAGGTGTNTTGTCCAAGGTCATAGTGTTGCNGGTTTGGAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATGGAATGGCCTCTACAGCTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATAACAGAACATGAAGCCATTGCTAACTAGATCACCAAAAAAGGAACAAATTTAGCACTGTTCTCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGCNGTTNTTGCAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU056374             [CGCGGCCATTGTCCCCAGCTCAAAAGGTGTNTTGTCCAAGGTCATAGTGTTGCNGGTTTGGAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATGGAATGGCCTCTACAGCTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATAACAGAACATGAAGCCATTGCTAACTAGATCACCAAAAAAGGAACAAATTTAGCACTGTTCTCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGCNGTTNTTGCAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11223#3 CGCGGCCATTGTCCCCAGCTCAAAAGGTGTNTTGTCCAAGGTCATAGTGTTGCNGGTTTG GAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATG GAATGGCCTCTACAGCTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATA ACAGAACATGAAGCCATTGCTAACTAGATCACCAAAAAAGGAACAAATTTAGCACTGTTC TCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGCNGTTNTTGC AAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      GGCAGTCCACACCACCCGAATCCCCTCCACTCCCCCGCGGTCACCGGCGGCGCCGGCGGC 60
consensus_11223#1      ------------------------------------------------------------
                                                                                   

consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      GAGCTCTCGCCGACGCCGATGACCACCGCGCGGTTCGTCTCCCCCTCCCTCTCGCGCGTG 120
consensus_11223#1      ------------------------------------------------------------
                                                                                   

consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      TCCCCCTCGCCGGCCGGCCGAGTCTCCGGGTCGTCGTGGTTGTCCAGGGCTGGGGTCGCC 180
consensus_11223#1      ------------------------------------------------------------
                                                                                   

consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      CTCCCCGCTCGGCCGCACGGTCTCTCGCTCCACCTGAGGCCGCCTGCTATGGCCTCCGCC 240
consensus_11223#1      ------------------------------------------------------------
                                                                                   

consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      GCCGCCGCCGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGCGTTGTCCAGGATA 300
consensus_11223#1      ------------------------------------------------------------
                                                                                   

consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      GGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGC 360
consensus_11223#1      ------------------------------------------------------------
                                                                                   

consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      ACTGGTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATCAACTG 420
consensus_11223#1      ------------------------------------------------------------
                                                                                   

consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      GCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGAC 480
consensus_11223#1      ------------------------------------------------------------
                                                                                   

consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      CATCACTCAAACGAAGACATCGCTTTGGCAATTGGAACGGCACTACTTGAAGCACTTGGA 540
consensus_11223#1      ------------------------------------------------------------
                                                                                   

consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      GATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTT 600
consensus_11223#1      ------------------------------------------------------------
                                                                                   

consensus_11223#2      ------CCATGCTATCTTTTCAGTCATGTATACTCCTGCTATCATCTTAGACAGCTATT- 53
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      GAGGTTATACTGGATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACT 660
consensus_11223#1      --------------ACCCGAATCCCCTCCACTCCCCCGCGGTCACCGGCGGCGCCGGCGG 46
                                                                                   

consensus_11223#2      ----GATTTATTCACTTTGATGACCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAAT 109
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      GAGAGAGTTGGCACATACGATACTCAGCTAGTTGAGCACTTTTTCCAATCTCTTGTGAAT 720
consensus_11223#1      CGAGCTCTCGCCGACGCCGATGACCACCGCGCGGTTCGTCTCCCCCTCCCTCTCGCGCGT 106
                                                                                   

consensus_11223#2      ACATCTGGGATGACACTTCACATCCGTCAGCTTGCTGGAAAAAACTCCCCCCATATTATT 169
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      ACATCTGGGATGACACTTCACATCCGTCAGCTTGCTGGAAAAAACTCACACCATATTATT 780
consensus_11223#1      GTCCCCCTCGCCGGCCGGCCGAGTCTCCGGGTCGTCGTGGTTGTCCAGGGCTGGGGTCGC 166
                                                                                   

consensus_11223#2      GAGGCAACTTTCAAAGCATTTGTTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGC 229
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      GAGGCAACTTTCAAAGCATTTGCTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGC 840
consensus_11223#1      CCTCCCCGCTCGGCCGCACGGTCTCTCGCTCCACCTGAGGCCGCCTGCTATGGCCTCCGC 226
                                                                                   

consensus_11223#2      CGACGCGGC-ACTGTCCCCAGCTCAAAAGGTGTGTTGTC-AAGGTCATAGTGTTG--CAG 285
consensus_11223#3      ---CGCGGCCATTGTCCCCAGCTCAAAAGGTGTNTTGTCCAAGGTCATAGTGTTG--CNG 55
consensus_11223#0      CGACGCGGC-ACTGTCCCCAGCTCAAAAGGTGTGTTGTC-AAGGTCATAGTGTTG--CAG 896
consensus_11223#1      CGCCGCCGC---CGGGAACGGCTCTCCTTCCGCGCCGGAGGACTCCACAGCGTTGTCCAG 283
                          *** **    *    * ****       *    *    *   ** ** ****  * *

consensus_11223#2      GTTTGGAAAA--CAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAA-GGA 342
consensus_11223#3      GTTTGGAAAA--CAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAA-GGA 112
consensus_11223#0      GTTTGGAAAA--CAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAA-GGA 953
consensus_11223#1      GATAGGAGAAGTCAAGAGGGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGA 343
                       * * *** **  **** **   *       *     ***  **   ** **  *   ***

consensus_11223#2      AACAAATGGAATGGCCT-CTACAGCTCCTGGAGTCCTACTTACCCTGGGAATCTCCGTTG 401
consensus_11223#3      AACAAATGGAATGGCCT-CTACAGCTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTG 171
consensus_11223#0      AACAAATGGAATGGCCT-CTACAGCTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTG 1012
consensus_11223#1      TGGCACTGGTGTTGCCGATTGCAGCACAGGGATACCT-----TTCTTGGATCACATGCTC 398
                           * ***  * ***   * **** *   **  ***       ** ***      * * 

consensus_11223#2      GTTGCGATAACAGACCATGAAGCCATTGCTAACTAGATCCCCAAAAAAGGAACAAATTTA 461
consensus_11223#3      GTTGCGATAACAGAACATGAAGCCATTGCTAACTAGATCACCAAAAAAGGAACAAATTTA 231
consensus_11223#0      GTTGCGATAACAGAACATGAAGCCATTGCTAACTAGATCACCAAAAAAGGAACAAATTTA 1072
consensus_11223#1      GATCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAA-GGCAAAGGGTGACACTCA 457
                       * *    *  **   ****    * ***     *   *       *****   * * * *

consensus_11223#2      GCCCTGTTCTCATGATCTATTTTTCTGTACCATTTAGCATTCGAAATAAACATGTCCGGC 521
consensus_11223#3      GCACTGTTCTCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGC 291
consensus_11223#0      GCACTGTTCTCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGC 1132
consensus_11223#1      CATCGATGACCATCACTCAAACGAAGACATCGCTTGGCAATTGGAACGG-CACTACTTGA 516
                          *  *   *** *   *         * *  ** *** * * **    **   *  * 

consensus_11223#2      CGTTATTGCAATTTTGGATGCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACG 581
consensus_11223#3      NGTTNTTGCAAAAAAAAAAAAAAAAAAAAAAA---------------------------- 323
consensus_11223#0      CGTTATTGCAATTTTGGATGCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACG 1192
consensus_11223#1      AGCACTTGGAGATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGA 576
                        *   *** *       *    *                                     

consensus_11223#2      GCGTGTTTAGCAGCTCAGTTTCACTCTGTATGAGTTCAGAGTTGGTCATGTTGCTGACCC 641
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      GCGTGTCTAGCAGCTCAGTTTCACTCTGTATGAGTTCAGAGTTGGTCATGTTGCTGAACC 1252
consensus_11223#1      GGCAGCGGTTGAGGTTATACTGGATCTATCTGG--TCGTCCTCATTTGAGTTGCGGCTTA 634
                                                                                   

consensus_11223#2      TCTGTATTTTCAAGGGAATAAATAAGTTTTGCCCCTGGGTTTCTG--------------- 686
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      TCTGTATTTTCAAGGGAATAAATAAGTTTTGCACCTACGTTTCT---------------- 1296
consensus_11223#1      AGTATTCCGACTGAGAGAGTTGGCACATACGATACTCAGATCCAATATGGCTTATCCTTA 694
                                                                                   

consensus_11223#2      ------------------------------------------------------------
consensus_11223#3      ------------------------------------------------------------
consensus_11223#0      ------------------------------------------------------------
consensus_11223#1      ATCGTCTAATGTGACATGGCTATTGNGTTGTCTTGCATCATTCGTATTCATCCTCTGACG 754
                                                                                   

consensus_11223#2      -----------------------------------------------------------
consensus_11223#3      -----------------------------------------------------------
consensus_11223#0      -----------------------------------------------------------
consensus_11223#1      TTCTTCCTATCATTGGACAATTCTTTTTGATGAAATATTTAAATAATACTTCTTTTTTT 813
                                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)