These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 446 fasta sequence [AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCGATCCTGATCTTGAGCCCCTAAATTTGCTGTTTGTGTTGGTGTTTCCTCGGTTGAAATGCAAATTGCTTTCTACCCTAACAAAAAAA] [+] EMBL AU092606 [AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCGATCCTGATCTTGAGCCCCTAAATTTGCTGTTTGTGTTGGTGTTTCCTCGGTTGAAATGCAAATTGCTTTCTACCCTAACAAAAAAA] [+] EMBL AU068822 [AGGCCGAGGAATAACNGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATNCCATCATCCAGCNCCAAGGGATCATAGACTCCNATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTTGTCAAAAANACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCGATCCaaaaaaaa ] [-] EMBL CB627444 [ GGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCTCCTCCCAATTCCATCCAAATTTTTCCTCTTTTTCCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGC CACACACACACCACAAACACTTATTGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCATGATGGCTGG TTTTTTTTCCTAGTGGTTTGTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCGATCCTGATCTTGAGCCCC ] consensusID : consensus_11231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 375 fasta sequence [AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACA-C-TT-CTT-GAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGG-TTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTT-GTAAAGATA-GTGCTACT-GCCAATCCGAGAT-GAGTTTCTGCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU063213 [AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTNTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACA CTTT CTTGGAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTTCCTAGTGGGTTGTCAAAAAAACTT GTAAAGATAGGTGCTACTGGCCAATCCGNGATGGNGTTTCTGGAAAAAAA ] [-] EMBL CF325795 [ GGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACA C TT CTT GAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGG TTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTT GTAAAGATA GTGCTACT GCCAATCCGAGAT GAGTTTCTGCAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF325063 [ GGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAATTCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTCTTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTCAAAACTTGCTTCCAGTGCCACACACACACACCACAAACA C TT CTT GAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGG TTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTT GTAAAGATA GTGCTACT GCCAATCCGAGAT GAGTTTCTGCAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL BI796631 [ CACACACACACCACATACACC TTGATT GAGAGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCATGATGGCTGG TTTTTTTTCCTAGTGGTTTGTC AAAAAACTTGGTAAAGATA GTGCTACT GCC ATCCGAGAT GAGTTTCT CAAAAAAAAAA ] [-] EMBL CF325038 [ AGCTGTGTTGCTGGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGG TTTTTTTTTCCTAGTGGTTTGTCAAAAAAACTT GTAAAGATA GTGCTACT GCCAATCCGAGAT GAGTTTCTGCAAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11231#0 AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAAT 60 consensus_11231#1 AGGCCGAGGAATAACAGCAACTTCAACAACAACCGGAATTGGTCAAGATGAGGCACCAAT 60 ************************************************************ consensus_11231#0 TCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTC 120 consensus_11231#1 TCCATCATCCAGCACCAAGGGATCATAGACTCCCATCTCCCAATTCCATCCAAATTTTTC 120 ************************************************************ consensus_11231#0 TTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTC 180 consensus_11231#1 TTCTTTTTTCGGCTAAAGTTAGTCCAGCCAAGTACATAAACAGCAATAAGGCTTTCCTTC 180 ************************************************************ consensus_11231#0 AAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCT 240 consensus_11231#1 AAAACTTGCTTCCAGTGCCACACACACACACCACAAACACTTCTTGAGAGCTGTGTTGCT 240 ************************************************************ consensus_11231#0 GGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTT 300 consensus_11231#1 GGTTTGCACTCTCTTTTAACCTTTTGATCACGATGGCTGGTTTTTTTTTCCTAGTGGTTT 300 ************************************************************ consensus_11231#0 GTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAATACCG 360 consensus_11231#1 GTCAAAAAAACTTGTAAAGATAGTGCTACTGCCAATCCGAGATGAGTTTCTGCAAAAAAA 360 ******************************************************* * consensus_11231#0 ATCCTGATCTTGAGCCCCTAAATTTGCTGTTTGTGTTGGTGTTTCCTCGGTTGAAATGCA 420 consensus_11231#1 AAAAAAAAAAAAAAA--------------------------------------------- 375 * * * consensus_11231#0 AATTGCTTTCTACCCTAACAAAAAAA 446 consensus_11231#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||