These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2127 fasta sequence [TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAATTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAAAAAAATGAGACTAGACCTGAAAAAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAGTGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGGAGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATTGTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGCGTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACACAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAACAACTGCAATGGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGTTGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTTGACAAACAGAATTCAATAGATAACGTTTAGTTGTCATCAATATTTTTTTTTTTACATTTGGCTGTTTTCCTTGTTTCCTCCAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACAATGG] [+] EMBL AK101078 [TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAATTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAAAAAAATGAGACTAGACCTGAAAAAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAGTGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGGAGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATTGTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGCGTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACACAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAACAACTGCAATGGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGTTGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTTGACAAACAGAATTCAATAGATAACGTTTAGTTGTCATCAATATTTTTTTTTTTACATTTGGCTGTTTTCCTTGTTTCCTCCAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACAATGG] consensusID : consensus_11236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2073 fasta sequence [TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAA-TTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAGCAAAAAATGAGACTAGACCTGAAAAAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAGTGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGGAGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATTGTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGCGTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACACAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAACAACTGCAATGGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGTTGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACAATGGAAGTTTATTTAGAAAAATGAGAACGTGGCTA] [+] EMBL AK067224 [TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAA TTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAGCAAAAAATGAGACTAGACCTGAAAAAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAGTGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGGAGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATTGTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGCGTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACACAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAACAACTGCAATGGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGTTGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACAATGGAAGTTTATTTAGAAAAATGAGAACGTGGCTA] [+] EMBL AK070919 [TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCAACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAA TTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAGCAAAAAATGAGACTAGACCTGAAAAAACTGAAACA ] [-] EMBL CB648818 [ AACCTTATTGCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTTACATTGCTTATGCTCCCGTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGGTTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCCTTCATGTGGTTGCTCTCGTGTATTACATAAAAGGACTTCTATCTCCCAGGCTGTTCAAAGTAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTCGCAGTAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGGGAACATCAACCCCCTACCTGGCCCTCATATTTCATGGATATCAACGTGTTGGCCTTCTGGATTCCTGCTGGGATCATTTCATGCTTTTTGCCTTTATGTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCGTGGTGGGTGCATTTTATCTGGAATCGCTCTTTGTGAGGCTTTAGAGGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAAGTTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGTTAGTACTGTCTCCCCAAATTCAGCAAAAAAggga ] [+] EMBL CB663559 [ TAATAGCTATACTCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTACTTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAACCCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTGGGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGGTCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTGCGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTAAATATCAGCTATCAAAA TTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAGAGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAGCAAAAAATGAGACTAGACCTGAAAAAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAGTGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGGAGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATTGTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGCGTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCC ] [-] EMBL CB635991 [ CAATAATACTTGGAATAATACCCACATAGCAACAGTTGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACAATGAAAGTTTATTTAAAAAAAAGA ] [+] EMBL CA305806 [ ACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAAT AAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCATTGTTTGCAACACGCGGTTTAGTGNCTTTTATACTCCTTTTGCACTGAAGATGTTTAGGCGGACGTACctcggtc ] consensusID : consensus_11236#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [GGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTTGATGCTTTGTGGACTTCTTTAGAACAAATCAATAACTAGTGGCCCCAGATCCCTGACGTTGGGTGTTTACTTTACAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCCATT] [-] EMBL CB663560 [GGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAGATCTTCAATTCTTTAGATGTCAAATATGTCCTTGTTGTATTTGGAGGTTGATGCTTTGTGGACTTCTTTAGAACAAATCAATAACTAGTGGCCCCAGATCCCTGACGTTGGGTGTTTACTTTACAGGTCTTGTTGGCTACCCTAGCGATGATATTAACAAGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATTATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCCTCATGTACAAGCTTTGCTATTACAGGTTCGTTGAGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCAAACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAACTGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAGCTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATGCGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAAAAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTTGACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGCTCTAAGCTTTTTGGCCCCCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11236#0 TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCA 60 consensus_11236#1 TCAATGCTCTCTCATATTTCTACATGGTCTGTTCTTGGGGAGGTTACACATTCATCATCA 60 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 ACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTT 120 consensus_11236#1 ACCTTATTCCAATTCATGTACTGTTGTGCATTGTCACTGGTCGTTATTCTTCACGGCTTT 120 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 ACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGG 180 consensus_11236#1 ACATTGCTTATGCTCCCCTTGTTATACTGGGAACACTTCTGGCAGCCTTAGTACCCGTGG 180 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 TTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCC 240 consensus_11236#1 TTGGTTTTAATGCAGTGATGACGTCTGAGCACTTTGCATCATTTCTGGTGTTCATAATCC 240 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 TTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAG 300 consensus_11236#1 TTCATGTGGTTGCTCTTGTGTATTACATAAAAGGACTTCTAACTCCCAGGCTGTTCAAAG 300 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 TAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATAC 360 consensus_11236#1 TAGCTATGACTCTTGTCATAACAGTTGGCTTGGCTGTTTGTTTTGCAGTAATAGCTATAC 360 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 TCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTAC 420 consensus_11236#1 TCATCGCTTTGGTGGCATCTAGCCCCACAAAAGGATGGAGTGGGCGCAGTTTGAGTCTAC 420 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 TTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAAC 480 consensus_11236#1 TTGATCCAACCTATGCAAGCAAGTACATCCCTATTATTGCTAGTGTCAGCGAACATCAAC 480 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 CCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTG 540 consensus_11236#1 CCCCTACCTGGCCCTCCTATTTCATGGATATCAACGTGTTGGCCTTCTTGATTCCTGCTG 540 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 GGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGG 600 consensus_11236#1 GGATCATTTCATGCTTCTTGCCTTTATCTGATGCAAGCTCCTTCGTGGTCTTGTACTTGG 600 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 TCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTG 660 consensus_11236#1 TCACCGCAGTATATTTTTCTGGAGTAATGGTGCGGCTTATGCTTGTCCTTGCTCCTGCTG 660 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 CGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTA 720 consensus_11236#1 CGTGCATTTTATCTGGAATCGCTCTTTCTGAGGCTTTCGACGTCCTCACAAGATCCGTTA 720 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 AATATCAGCTATCAAAATTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAG 780 consensus_11236#1 AATATCAGCTATCAAAATTATTTGATGACAGCCCTGCTGCTTCAGGGGATAGTAGTGCAG 780 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 AGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCA--AAAAAATGAGACTAGACCTGAAA 838 consensus_11236#1 AGAGTTCTAGCGCTAGTACTGTCTCCACAAATTCAGCAAAAAATGAGACTAGACCTGAAA 840 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 AAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAG 898 consensus_11236#1 AAACTGAAACAGCCCCAAAGGAAAAACCATCAAAGAAAAACCGGAAGAAGGAAAAGGAAG 900 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 TGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGG 958 consensus_11236#1 TGGCTGAAAGTGTTCCTGTAAAGCCTAAAAAGGAAAAGAAGCTTTTGGTACTTCCTATGG 960 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 AGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATT 1018 consensus_11236#1 AGGCATCTGTTTTGGGCATTTTGTTGCTGATCGTGTTAGGTGGTTTCTATGTGGTCCATT 1020 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 GTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGC 1078 consensus_11236#1 GTGTGTGGGCAGCAGCTGAGGCGTACTCAGCTCCTTCAATTGTGTTGACTTCTCGTTCGC 1080 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 GTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACA 1138 consensus_11236#1 GTGATGGATTGCATGTTTTTGATGATTTCCGTGAAGCCTATGCATGGCTCAGCCATAACA 1140 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 CAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAA--CAACTGCAAT 1196 consensus_11236#1 CAGATGTTGATGACAAGGTTGCGTCCTGGTGGGATTATGGTTATCAAA--CAACTGCAAT 1198 consensus_11236#2 ----------------------GGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGA 38 * * * * ** * *** ** ** consensus_11236#0 GGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGT 1256 consensus_11236#1 GGCCAACAGGACTGTAATTGTAGACAATAATACTTGGAATAATACCCACATAGCAACAGT 1258 consensus_11236#2 GATCTTCAATTCTTTAGATGTCAAATATG-TCCTTGTTGTATT----------TGGAGGT 87 * * ** ** ** *** * ** * **** ** * ** consensus_11236#0 TGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAG-ATCTTCAATTCTTTAGATG 1315 consensus_11236#1 TGGAACAGCGATGTCATCTCCAGAAAAAGCAGCTTGGGAG-ATCTTCAATTCTTTAGATG 1317 consensus_11236#2 TGATGCTTTGTGGACTTCTTTAGAACAAATCAATAACTAGTGGCCCCAGATCCCT-GACG 146 ** * * * * *** **** ** * ** * ** ** * ** * consensus_11236#0 TCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACA 1375 consensus_11236#1 TCAAATATGTCCTTGTTGTATTTGGAGGTCTTGTTGGCTACCCTAGCGATGATATTAACA 1377 consensus_11236#2 TTGGGTGTTTACTT--------TACAGGTCTTGTTGGCTACCCTAGCGATGATATTAACA 198 * * * * *** * *********************************** consensus_11236#0 AGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATT 1435 consensus_11236#1 AGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATT 1437 consensus_11236#2 AGTTCCTTTGGATGGTTCGCATAGGAGGTGGTGTATTCCCTCACATCAAGGAACCTGATT 258 ************************************************************ consensus_11236#0 ATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCC 1495 consensus_11236#1 ATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCC 1497 consensus_11236#2 ATCTTAGGGATGGTAACTATCGTGTTGATGCTCAAGGCACCCCAACTATGCTGAATTGCC 318 ************************************************************ consensus_11236#0 TCATGTACAAGCTTTGCTATTACAGGTTTGACAAACAGAATTCAATAGATAACGTTTAGT 1555 consensus_11236#1 TCATGTACAAGCTTTGCTATTACAGGTT-------------------------------- 1525 consensus_11236#2 TCATGTACAAGCTTTGCTATTACAGGTT-------------------------------- 346 **************************** consensus_11236#0 TGTCATCAATATTTTTTTTTTTACATTTGGCTGTTTTCCTTGTTTCCTCCAGGTTCGTTG 1615 consensus_11236#1 -------------------------------------------------------CGTTG 1530 consensus_11236#2 -------------------------------------------------------CGTTG 351 ***** consensus_11236#0 AGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCA 1675 consensus_11236#1 AGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCA 1590 consensus_11236#2 AGACCGATGGCAAAGGTTTTGATAGAGTAAGAGGATATGAAATAGGAAAGAAGCATTTCA 411 ************************************************************ consensus_11236#0 AACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAAC 1735 consensus_11236#1 AACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAAC 1650 consensus_11236#2 AACTAACACATTTTGAGGAGGTTTTCACAACCCACCACTGGATGGTCCGTATATATAAAC 471 ************************************************************ consensus_11236#0 TGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAG 1795 consensus_11236#1 TGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAG 1710 consensus_11236#2 TGAAACCTCAAAAGAATAGGGTTCGGGGCAAGTTGAAGAAGTTGAAATCTGGCTCCAAAG 531 ************************************************************ consensus_11236#0 CTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATG 1855 consensus_11236#1 CTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATG 1770 consensus_11236#2 CTAGCTCAACGAATGCGGCGGGCCGAAAGAAGAACCCATGGCAATAAAAATGAGTAAATG 591 ************************************************************ consensus_11236#0 CGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAA 1915 consensus_11236#1 CGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAA 1830 consensus_11236#2 CGAAAAGCGACGTGGCTGCTTGGAATTTGCTTTTGCTAGCTCAACTGCAACTAAGCTCAA 651 ************************************************************ consensus_11236#0 AAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTT 1975 consensus_11236#1 AAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTT 1890 consensus_11236#2 AAGAACTAGAAAACCACAGGCCTAGGATTAGAGATTGCTGCGTTATTGCACTCAGTATTT 711 ************************************************************ consensus_11236#0 GACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGC 2035 consensus_11236#1 GACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGC 1950 consensus_11236#2 GACACCCCTAATATGTTTTTGGGACCAGCAGGAGTGCTGAAGAAATTTTTGATAGACTGC 771 ************************************************************ consensus_11236#0 TCTAAGCTTTTTGGCCCC-ATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTT 2094 consensus_11236#1 TCTAAGCTTTTTGGCCCC-ATTGTTTGCAACACGCGGTTTAGTGTCTTTTATACTCCTTT 2009 consensus_11236#2 TCTAAGCTTTTTGGCCCCCATT-------------------------------------- 793 ****************** *** consensus_11236#0 TGCACTGAAGATGTTTAGGCGGACGTACAATGG--------------------------- 2127 consensus_11236#1 TGCACTGAAGATGTTTAGGCGGACGTACAATGGAAGTTTATTTAGAAAAATGAGAACGTG 2069 consensus_11236#2 ------------------------------------------------------------ consensus_11236#0 ---- consensus_11236#1 GCTA 2073 consensus_11236#2 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||