These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1073 fasta sequence [ATAGCTCCCGGCCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTTTACCTCTTACAACGCATGCCTACTGGTCTGATTTCATAAGATTACCGAGTTCTGATGTTATTAGGATTACGTTGCGTACTTAGAGGGAATGCTTGTTCCACAACTAGTGTTTTGATAATTTAATTTTACCTGTAGAGACTACAGAGATCAAAGTTTAGTAGGTTGAGGGGCAATGGCAATGCACAATTAGAATGGTCAATAACTACTAGTGCTTGTGTAGTTGTACCATCAATCAGTGTATCCAGGTTTACAACAAAGTTGTTCAGAGCAGTATGATGAGATG] [+] EMBL AK069064 [ATAGCTCCCGGCCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTACAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTTTACCTCTTACAACGCATGCCTACTGGTCTGATTTCATAAGATTACCGAGTTCTGATGTTATTAGGATTACGTTGCGTACTTAGAGGGAATGCTTGTTCCACAACTAGTGTTTTGATAATTTAATTTTACCTGTAGAGACTACAGAGATCAAAGTTTAGTAGGTTGAGGGGCAATGGCAATGCACAATTAGAATGGTCAATAACTACTAGTGCTTGTGTAGTTGTACCATCAATCAGTGTATCCAGGTTTACAACAAAGTTGTTCAGAGCAGTATGATGAGATG] [+] EMBL AK061592 [ GGCCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGGGACCAACGACTTCGTCGGCGCGGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTT ] [+] EMBL CA754029 [ GCCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCG ] consensusID : consensus_11237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 836 fasta sequence [CCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGA-CTTCGTCGGCGCG-GTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTTTACCTCTTTAAAAAAAAAAAAAACAAAACGACTCGACTCGGCCGAANTCGGCACGNG] [+] EMBL AF095709 [CCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCGCGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCCGCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCCGCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGAAGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGAAGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCTACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGA CTTCGTCGGCGCG GTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCACAAAAGTTTTACCTCTTTAAAAAAAAAAAAAA ] [+] EMBL CF324831 [ CAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGAACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGTGA ] [+] EMBL BI811599 [ ACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACC ACGATCTTCGTCGGCTCGTGTGTTCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCTCCGAGGTGTACGCCAA CTGCTCGGCTCGCTGCAGGGGCCC CGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATCAC AAAGTTTTAC ] [-] EMBL BE228892 [ ccccttnGAGGAGACCAANGA NTTCGTCGGCGCG GTGTTCGAGGGCAAGTTCTACGCCCCCGGGGANTTCAAGGCGTTGGAGACAATGCCCAGCCGCGCGGAGGTGNACGCCAAGCNGCTCGGCTCG TGCAGGGGCCCGCGACNTCTGTNGTCACCACGCTGCAGGCGCCGGCCAGGGANGTTGTCTCCGTGCTCTCGGCGAANGTGCGCAAGCTCGAGCAGGAGGTNGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTAGTGGCTTCGTTTCTCTCATCTCACTCATTTCTNGTAGAATTCCTGNACTTTTACTGCCTNACGNNTGAATTGAATCACAAAAGTT ] [-] EMBL AA753159 [ CCAACGA TTNGTCGGCGCG GTGTTCGAGGGCAA TTNTACGCCCCCGGGGACTTCAAGGCGNNANAGACAATGCCCAGCCGCGCCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCACGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCGAGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCTCATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTGGGAATTGAATCACAAAAGTTTTACCTCTTAAAAAAAAAAAAAAACAAAACGACTCGACTCGGCCGAANTCGGCACGNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11237#0 ATAGCTCCCGGCCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCG 60 consensus_11237#1 -----------CCTCCGAAGATGGAGACCTCCTCCTTCCTCCGCACCACCCTCCCCACCG 49 ************************************************* consensus_11237#0 CGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCC 120 consensus_11237#1 CGAAGCCCCTCCCGGCGTTCCAGACCCTCGCACCCCGCCCCCGCCCCCGCCCGCTCCGCC 109 ************************************************************ consensus_11237#0 GCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCC 180 consensus_11237#1 GCTCCACCATCAGCGCGGCCATCACCCGAGGCCGCAAGGAGGACACGGTGGCCGCCGTCC 169 ************************************************************ consensus_11237#0 GCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGA 240 consensus_11237#1 GCGAGCAGCTGGAGGGCTGCTACCTCCTCGCCGGGATCCGCTACGAGGGCCTCACGGTGA 229 ************************************************************ consensus_11237#0 AGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGA 300 consensus_11237#1 AGCAGCTGCAGGGCATCCGCGACACCCTCCCGGAGACCTGCCGGCTGCTGGTGGCGAAGA 289 ************************************************************ consensus_11237#0 ACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGA 360 consensus_11237#1 ACACGCTGGTGGGGAAGGCCATCGAGGGCACGCCGTGGGAGGCGCTCAAGCCGTGCATGA 349 ************************************************************ consensus_11237#0 AGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCT 420 consensus_11237#1 AGGGGATGAACGCGTGGCTGTTCGTCCACACCGAGGAGGTCCCCGCCGCGCTCAAGCCCT 409 ************************************************************ consensus_11237#0 ACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGT 480 consensus_11237#1 ACCGCGCCTTCCAGAAGGAGGAGCGCCTCGAGGAGACCAACGACTTCGTCGGCGCGGTGT 469 ************************************************************ consensus_11237#0 TCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCG 540 consensus_11237#1 TCGAGGGCAAGTTCTACGCCCCCGGGGACTTCAAGGCGCTCGAGACAATGCCCAGCCGCG 529 ************************************************************ consensus_11237#0 CCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCA 600 consensus_11237#1 CCGAGGTGTACGCCAAGCTGCTCGGCTCGCTGCAGGGGCCCGCGACCTCCGTCGTCACCA 589 ************************************************************ consensus_11237#0 CGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCG 660 consensus_11237#1 CGCTGCAGGCGCCGGCCAGGGACGTCGTCTCCGTGCTCTCGGCGTACGTGCGCAAGCTCG 649 ************************************************************ consensus_11237#0 AGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCT 720 consensus_11237#1 AGCAGGAGGTCGGCGCCGCCTGATGGCTGTTGAGAGATGGTTTTGTGGCTTCGTTTCTCT 709 ************************************************************ consensus_11237#0 CATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATC 780 consensus_11237#1 CATCTCACTCATTTCTTGTAGAATTCCTGTACTTTTACTGCCTCACGTTTGAATTGAATC 769 ************************************************************ consensus_11237#0 ACAAAAGTTTTACCTCTTACAACGCATGCCTACTGGTCTGATTTCATAAGATTACCGAGT 840 consensus_11237#1 ACAAAAGTTTTACCTCTTTAAAAAAAAAAAAAACAAAACGACTCGACTCGG---CCGAAN 826 ****************** ** * * ** * * * **** consensus_11237#0 TCTG-ATGTTATTAGGATTACGTTGCGTACTTAGAGGGAATGCTTGTTCCACAACTAGTG 899 consensus_11237#1 TCGGCACGNG-------------------------------------------------- 836 ** * * * consensus_11237#0 TTTTGATAATTTAATTTTACCTGTAGAGACTACAGAGATCAAAGTTTAGTAGGTTGAGGG 959 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 GCAATGGCAATGCACAATTAGAATGGTCAATAACTACTAGTGCTTGTGTAGTTGTACCAT 1019 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 CAATCAGTGTATCCAGGTTTACAACAAAGTTGTTCAGAGCAGTATGATGAGATG 1073 consensus_11237#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||