These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2620 fasta sequence [AGTTAGCATCTCGCCATTCCTCCGATCCCCACCTCCACCAATGGCGCTCTCCATCTCCACGCCGCCGACCTCCTCCTCCCTCCTGCCGGCCTCCCTCCAGGTCGGCAGGTGGAGCTCGTCGGCGGCGATGTCGGCCAGGCCTGTGGCTTTTAGCCTCCGGAGGCCGGTTCTTGCGGCCCGTGTAGCCGCCGGCGGCAACGCACCGTCTTCCTCCGTGGACGAGGTGGTCACTGAGCTCGATGCCGTGGCCAGCTTCAGCGAGATCGTGCCGGATACCGTCGTGTTCGATGACTTCGAGAAGTTTGCGCCGACCGCCGCCACGGTGAGCTCGTCGCTGCTGCTCGGTATCGCTGGCCTCCCGGATACAAAGTTCAAGAGTGCTATAGATACAGCGTTGGCAGACGGTGAATGTAACACAATGGAGAAGCCCGAGGACCGGATGTCCTGTTTCCTAACCAAGGCCCTGGCAAATGTTGGAGCTGAAATGGCTCATCTAGTCCCTGG-TCGGGTGTCGACTGAAATAGATGC-TCGGTTGGCTTATGATACCCAAGGAATTATCCAGAGGGTGCATGAGCTTTTGAAGCTATACAGTGATCATGATGTCTTATCTGAACGCCTGCTGTTCAAAATTCCGGCTACATGGCAAGGTATAGAGGCCTCGAGGTTGCTTGAATCTGAAGGGATTCAAACACATTTAACATTTGTGTACAGGTATGTACATATGCTTTGCCTAATTTGATCATGGCCCTATTTCTTATAGTGGGCAATGGTATAGATGCTGGGTGTATGGCAATACTTATCTTTTTTGTGGGGTTAGAGAACTGCCTTCAATTTGTTTAGTCTTAAGATACTTCAGTAAGTATAAGGGAACTAATAAAGATTGTTTCTTATTATCATGCATCACTTATTAATGATGGCTCAATTGCATTGTAAGTATACATTTTGCTTTTATGTCAGCAGAAGAAGAGGTTTTCTATTGAATTTACCTGGTGAATTGTAATTACTCAATTAGGCCTGACTAGTTACTGTTGATAACAAGCTTATCTATAAAGGACTTGCACTATTGCAGGTGCATAAAAGCCATAAACTTACTCTTGCAATTTACATAAGATGGTATTGTTGGAGAGAGCAGACTGCAGGATGTGTAGCTCACCTAGTAGTTAGTAACTGAGAACTCGTAATCATTTTTTTTGTGTGCCTGATCATTCTTCTTCAGTTTTGCCCAAGCAGCAGCTGCAGCACAAGCCGGTGCATCTGTTGTACAGATCTTTGTGGGACGTGTTCGGGATTGGGCAAGGACTCACTCTGGCGACCCAGAGATTGATGAAGCTTTGAAGAAAGGAGAAGATGCTGGGCTTGCTTTGGCGAAGAAAGTGTATGCCTACATTCACAAAAATGGGTATAAAACAAAGTTGATGGCTGCTGCCATACGCAACAAGCAAGATGTGTTTAGCCTCCTGGGGTATTTTTCTTATTACAGATCAAGATTGATCGCAATGGATGTTAGTTTGTACAGAACTAATATTTCTGAAATGTAGGATTGACTACATCATTGCACCTCTGAAGATATTGCAGTCTTTGGAAGAATCTGTCACTGATACTGACGTGAAGTATGGTTATGTCCCAAGGCTGACTCCTGCTCTTGGCAAAACGTACAACTTCACTGAAGAGGAGGTTTGCTCACTTATCCTGGATTTTGTGCAGAGTCTTATATCATGCATTCTGTAGCTCCACCAAACTACTCGCTATAAGAGACTCATATTAGGGGTGTGATGTTTTATCTAAAATATATAGGATCTTCACTTGTCATGTGCTTTAACACTACTAGAGATGAAATAAGGAAGGAAAATAATATTTGGACTGTTTAGATCACCCTTAAAAGGTCATGTCAAAGCTCGTAGTAGGTGTAATCATGATTCACCAAACAGTTACTAGAACAATACAAACAAGTCATTGACATCCTATAAGAAGAGGAAAAATAAAACAAGAGAAGATAAGTGATTATATTTTTTATATGGCACCTTCATGCTAACTGTTCATATTTCAAATGATACCACGAATGCAGCTTGTGAAGTGGGACCAATTGAGTCTAGCAGCTGCAATGGGGCCAGCTGCGGAAGAACTACTTGCTTCTGGGTTGGAAGGATATGTGAACCAAGCACGCCGAGTGGAGGAACTCTTCGGGAAGATCTGGCCTCCTCCGAATGTTTGAACACATTCTATGATGAGGACCAGACCATGCCACAGTCTTCTATTCCAAAGAATAATAACAACAGCCACGGACAGTGCTGGCCAGCATTTGCTCGTTCCCTTCAAAGAATACTTCTCTTAGCCTGTCTGTGTTTGTACTTTGTAGTTCTCTAGCTATCTAGCAAATCTCACGATGACATGTCAAGAACATCTTTGTTTTCTTTTCGCAAAGATTGGATACGGATTTTCTCGAGTATTTCATTAGCCCGTGAGATGTGTACCATGAAATGTCACCCAAATGCTCTGCTGGATTGTTCTGAAGTCTGAACTGAATCTTCAGAGTTGCAGTTACTTATCACTACGTTTTTTTATAAAAAGATGGGTGCCATCAGCTAGTACTGTGAATTCCCATTTTCAGTAAAATGGAAGA] [+] EMBL C74853 [AGTTAGCATCTCGCCATTCCTCCGATCCCCACCTCCACCAATGGCGCTCTCCATCTCCACGCCGCCGACCTCCTCCTCCCTCCTGCCGGCCTCCCTCCAGGTCGGCAGGTGGAGCTCGTCGGCGGCGATGTCGGCCAGGCCTGTGGCTTNTAGCCTCCGGAGGCCGGTTCTTGCGGCCCGTGTAGCCGCCGGCGGCAACG ACCGTCTTCCTCCGTGGACGAGGTGGTCACTGAGCTCGATGCCGTGGCCAGCTTCAGCGAGGTCGTGCCGGATACCGTCGTGTTCGATGACTTCGAGAAGTTTGCGCCGACCGCCGCCACGGTGAGCTCGTCGCTGCTGCTCGGTATCGCTGGCCTCCCGGATANAAAGTTCAAGAGTGCTATAGATACAGCGTTGGCAGACGGTGAATGTAACACAATGGAGAAG CCGAAGACC GATGT CTGTTT CTAA ] [+] EMBL AK101430 [ TCTCGCCATTCCTCCGATCCCCACCTCCACCAATGGCGCTCTCCATCTCCACGCCGCCGACCTCCTCCTCCCTCCTGCCGGCCTCCCTCCAGGTCGGCAGGTGGAGCTCGTCGGCGGCGATGTCGGCCAGGCCTGTGGCCTTTAGCCTCCGGAGGCCGGTTCTTGCGGCCCGTGTAGCCGCCGGCGGCAACGCACCGTCTTCCTCCGTGGACGAGGTGGTCACTGAGCTCGATGCCGTGGCCAGCTTCAGCGAGATCGTGCCGGATACCGTCGTGTTCGATGACTTCGAGAAGTTTGCGCCGACCGCCGCCACGGTGAGCTCGTCGCTGCTGCTCGGTATCGCTGGCCTCCCGGATACAAAGTTCAAGAGTGCTATAGATACAGCGTTGGCAGACGGTGAATGTAACACAATGGAGAAGCCCGAGGACCGGATGTCCTGTTTCCTAACCAAGGCCCTGGCAAATGTTGGAGCTGAAATGGCTCATCTAGTCCCTGG TCGGGTGTCGACTGAAATAGATGC TCGGTTGGCTTATGATACCCAAGGAATTATCCAGAGGGTGCATGAGCTTTTGAAGCTATACAGTGATCATGATGTCTTATCTGAACGCCTGCTGTTCAAAATTCCGGCTACATGGCAAGGTATAGAGGCCTCGAGGTTGCTTGAATCTGAAGGGATTCAAACACATTTAACATTTGTGTACAGGTATGTACATATGCTTTGCCTAATTTGATCATGGCCCTATTTCTTATAGTGGGCAATGGTATAGATGCTGGGTGTATGGCAATACTTATCTTTTTTGTGGGGTTAGAGAACTGCCTTCAATTTGTTTAGTCTTAAGATACTTCAGTAAGTATAAGGGAACTAATAAAGATTGTTTCTTATTATCATGCATCACTTATTAATGATGGCTCAATTGCATTGTAAGTATACATTTTGCTTTTATGTCAGCAGAAGAAGAGGTTTTCTATTGAATTTACCTGGTGAATTGTAATTACTCAATTAGGCCTGACTAGTTACTGTTGATAACAAGCTTATCTATAAAGGACTTGCACTATTGCAGGTGCATAAAAGCCATAAACTTACTCTTGCAATTTACATAAGATGGTATTGTTGGAGAGAGCAGACTGCAGGATGTGTAGCTCACCTAGTAGTTAGTAACTGAGAACTCGTAATCATTTTTTTTGTGTGCCTGATCATTCTTCTTCAGTTTTGCCCAAGCAGCAGCTGCAGCACAAGCCGGTGCATCTGTTGTACAGATCTTTGTGGGACGTGTTCGGGATTGGGCAAGGACTCACTCTGGCGACCCAGAGATTGATGAAGCTTTGAAGAAAGGAGAAGATGCTGGGCTTGCTTTGGCGAAGAAAGTGTATGCCTACATTCACAAAAATGGGTATAAAACAAAGTTGATGGCTGCTGCCATACGCAACAAGCAAGATGTGTTTAGCCTCCTGGGGTATTTTTCTTATTACAGATCAAGATTGATCGCAATGGATGTTAGTTTGTACAGAACTAATATTTCTGAAATGTAGGATTGACTACATCATTGCACCTCTGAAGATATTGCAGTCTTTGGAAGAATCTGTCACTGATACTGACGTGAAGTATGGTTATGTCCCAAGGCTGACTCCTGCTCTTGGCAAAACGTACAACTTCACTGAAGAGGAGGTTTGCTCACTTATCCTGGATTTTGTGCAGAGTCTTATATCATGCATTCTGTAGCTCCACCAAACTACTCGCTATAAGAGACTCATATTAGGGGTGTGATGTTTTATCTAAAATATATAGGATCTTCACTTGTCATGTGCTTTAACACTACTAGAGATGAAATAAGGAAGGAAAATAATATTTGGACTGTTTAGATCACCCTTAAAAGGTCATGTCAAAGCTCGTAGTAGGTGTAATCATGATTCACCAAACAGTTACTAGAACAATACAAACAAGTCATTGACATCCTATAAGAAGAGGAAAAATAAAACAAGAGAAGATAAGTGATTATATTTTTTATATGGCACCTTCATGCTAACTGTTCATATTTCAAATGATACCACGAATGCAGCTTGTGAAGTGGGACCAATTGAGTCTAGCAGCTGCAATGGGGCCAGCTGCGGAAGAACTACTTGCTTCTGGGTTGGAAGGATATGTGAACCAAGCACGCCGAGTGGAGGAACTCTTCGGGAAGATCTGGCCTCCTCCGAATGTTTGAACACATTCTATGATGAGGACCAGACCATGCCACAGTCTTCTATTCCAAAGAATAATAACAACAGCCACGGACAGTGCTGGCCAGCATTTGCTCGTTCCCTTCAAAGAATACTTCTCTTAGCCTGTCTGTGTTTGTACTTTGTAGTTCTCTAGCTATCTAGCAAATCTCACGATGACATGTCAAGAACATCTTTGTTTTCTTTTCGCAAAGATTGGATACGGATTTTCTCGAGTATTTCATTAGCCCGTGAGATGTGTACCATGAAATGTCACCCAAATGCTCTGCTGGATTGTTCTGAAGTCTGAACTGAATCTTCAGAGTTGCAGTTACTTATCACTACGTTTTTTTATAAAAAGATGGGTGCCATCAGCTAGTACTGTGAATTCCCATTTTCAGTAAAATGGAAGA] [+] EMBL CF324186 [ TTTAGCCTCCGGAGGCCGGTTCTTGCGGCCCGTGTAGCCGCCGGCGGCAACGCACCGTCTTCCTCCGTGGACGAGGTGGTCACTGAGCTCGATGCCGTGGCCAGCTTCAGCGAGATCGTGCCGGATACCGTCGTGTTCGATGACTTCGAGAAGTTTGCGCCGACCGCCGCCACGGTGAGCTCGTCGCTGCTGCTCGGTATCGCTGGCCTCCCGGATACAAAGTTCAAGAGTGCTATAGATACAGCGTTGGCAGACGGTGAATGTAACACAATGGAGAAGCCCGAGGACCGGATGTCCTGTTTCCTAACCAAGGCCCTGGCAAATGTTGGAGCTGAAATGGCTCATCTAGTCCCTGGNTCGGGTGTCGACTGAAATAGATGCNTCGGTTGGCTTATGATACCCAAGGAATTATCCAGAGGGTGCATGAGCTTTTGAAGCTATACAGTGATCATGATGTCTTATCTGAACGCCTGCTGTTCAAAATTCCGGCTACATGG ] consensusID : consensus_11248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1599 fasta sequence [CTCCCTCATTCTCTCCCACAGTTAGCATCTCGCCATTCCTCCGATCCCCACCTCCACCAATGGCGCTCTCCATCTCCACGCCGCCGACCTCCTCCTCCCTCCTGCCGGCCTCCCTCCAGGTCGGCAGGTGGAGCTCGTCGGCGGCGATGTCGGCCGGGCCTGTGGCCTTTAGCCTCCGGAGGCCGGTTCTTGCGGCCCGTGTAGCCGCCGGCGGCAACGCACCGTCTTCCTCCGTGGACGAGGTGGTCACTGAGCTCGATGCCGTGGCCAGCTTCAGCGAGATCGTGCCGGATACCGTCGTGTTCGATGACTTCGAGAAGTTTGCGCCGACCGCCGCCACGGTGAGCTCGTCGCTGCTGCTCGGTATCGCTGGCCTCCCGGATACAAAGTTCAAGAGTGCTATAGATACAGCATTGGCAGACGGTGAATGTAACACAATGGAGAAGCCCGAGGACCGGATGTCCTGTTTCCTAACCAAGGCCCTGGCAAATGTTGGAGCTGAAATGGCTCATCTAGTCCCTGGTCGGGTGTCGACTGAAATAGATGCTCGGTTGGCTTATGATACCCAAGGAATTATCCAGAGGGTGCATGAGCTTTTGAAGCTATACAGTGATCATGATGTCTTATCTGAACGCCTGCTGTTCAAAATTCCGGCTACATGGCAAGGTATAGAGGCCTCGAGGTTGCTTGAATCTGAAGGGATTCAAACACATTTAACATTTGTGTACAGTTTTGCCCAAGCAGCAGCTGCAGCACAAGCCGGTGCATCTGTTGTACAGATCTTTGTGGGACGTGTTCGGGATTGGGCAAGGACTCACTCTGGCGACCCAGAGATTGATGAAGCTTTGAAGAAAGGAGAAGATGCTGGGCTTGCTTTGGTGAAGAAAGTGTATGCCTACATTCACAAAAATGGGTATAAAACAAAGTTGATGGCTGCTGCCATACGCAACAAGCAAGATGTGTTTAGCCTCCTGGGGATTGACTACATCATTGCACCTCTGAAGATATTGCAGTCTTTGGAAGAATCTGTC-ACTGATACTGACGTGAAGTATGGTTATGTCCCAAGGCTGACTCCTGCTCTTGGCAAAACGTACAACTTCACTGAAGAGGAGCTTGTGAAGTGGGACCAATTGAGTCTAGCAGCTGCAATGGGGCCAGCTGCGGAAGAACTACTTGCTTCTGGGTTGGAAGGATATGTGAACCAAGCACGCCGAGTGGAGGAACTCTTCGGGAAGATCTGGCCTCCTCCGAATGTTTGAACACATTCTATGATGAGGACCAGACCATGCCACAGTCTTCTATTCCAAAGAATAATAACAACAGCCACGGACAGTGCTGGCCAGCATTTGCTCGTTCCCTTCAAAGAATACTTCTCTTAGCCTGTCTGTGTTTGTACTTTGTAGTTCTCTAGCTATCTAGCAAATCTCACGATGACATGTCAAGAACATCTTTGTTTTCTTTTCGCAAAGATTGGATACGGATTCTCTCGAGTATTTCATTAGCCCGTGAGATGTGTACCATGAAATGTCACCCAAATGCTCTGCTGGATTGTTCTGAAGTCTGAACTGAATCTTCAGAGTTGCAGTTACTTATCACTAC] [+] EMBL AK058325 [CTCCCTCATTCTCTCCCACAGTTAGCATCTCGCCATTCCTCCGATCCCCACCTCCACCAATGGCGCTCTCCATCTCCACGCCGCCGACCTCCTCCTCCCTCCTGCCGGCCTCCCTCCAGGTCGGCAGGTGGAGCTCGTCGGCGGCGATGTCGGCCGGGCCTGTGGCCTTTAGCCTCCGGAGGCCGGTTCTTGCGGCCCGTGTAGCCGCCGGCGGCAACGCACCGTCTTCCTCCGTGGACGAGGTGGTCACTGAGCTCGATGCCGTGGCCAGCTTCAGCGAGATCGTGCCGGATACCGTCGTGTTCGATGACTTCGAGAAGTTTGCGCCGACCGCCGCCACGGTGAGCTCGTCGCTGCTGCTCGGTATCGCTGGCCTCCCGGATACAAAGTTCAAGAGTGCTATAGATACAGCATTGGCAGACGGTGAATGTAACACAATGGAGAAGCCCGAGGACCGGATGTCCTGTTTCCTAACCAAGGCCCTGGCAAATGTTGGAGCTGAAATGGCTCATCTAGTCCCTGGTCGGGTGTCGACTGAAATAGATGCTCGGTTGGCTTATGATACCCAAGGAATTATCCAGAGGGTGCATGAGCTTTTGAAGCTATACAGTGATCATGATGTCTTATCTGAACGCCTGCTGTTCAAAATTCCGGCTACATGGCAAGGTATAGAGGCCTCGAGGTTGCTTGAATCTGAAGGGATTCAAACACATTTAACATTTGTGTACAGTTTTGCCCAAGCAGCAGCTGCAGCACAAGCCGGTGCATCTGTTGTACAGATCTTTGTGGGACGTGTTCGGGATTGGGCAAGGACTCACTCTGGCGACCCAGAGATTGATGAAGCTTTGAAGAAAGGAGAAGATGCTGGGCTTGCTTTGGTGAAGAAAGTGTATGCCTACATTCACAAAAATGGGTATAAAACAAAGTTGATGGCTGCTGCCATACGCAACAAGCAAGATGTGTTTAGCCTCCTGGGGATTGACTACATCATTGCACCTCTGAAGATATTGCAGTCTTTGGAAGAATCTGTC ACTGATACTGACGTGAAGTATGGTTATGTCCCAAGGCTGACTCCTGCTCTTGGCAAGACGTACAACTTCACTGAAGAGGAGCTTGTGAAGTGGGACCAATTGAGTCTAGCAGCTGCAATGGGGCCAGCTGCGGAAGAACTACTTGCTTCTGGGTTGGAAGGATATGTGAACCAAGCACGCCGAGTGGAGGAACTCTTCGGGAAGATCTGGCCTCCTCCGAATGTTTGAACACATTCTATGATGAGGACCAGACCATGCCACAGTCTTCTATTCCAAAGAATAATAACAACAGCCACGGACAGTGCTGGCCAGCATTTGCTCGTTCCCTTCAAAGAATACTTCTCTTAGCCTGTCTGTGTTTGTACTTTGTAGTTCTCTAGCTATCTAGCAAATCTCACGATGACATGTCAAGAACATCTTTGTTTTCTTTTCGCAAAGATTGGATACGGATTCTCTCGAGTATTTCATTAGCCCGTGAGATGTGTACCATGAAATGTCACCCAAATGCTCTGCTGGATTGTTCTGAAGTCTGAACTGAATCTTCAGAGTTGCAGTTACTTATCACTAC] [-] EMBL CB662910 [ ATGTCTTATCTGAACGCCTGCTGTTCAAAATTCCGGCTACATGGCAAGGTATAGAGGCCTCGAGGTTGCTTGAATCTGAAGGGATTCAAACACATTTAACATTTGTGTACAGTTTTGCCCAAGCAGCAGCTGCAGCACAAGCCGGTGCATCTGTTGTACAGATCTTTGTGGGACGTGTTCGGGATTGGGCAAGGACTCACTCTGGCGACCCAGAGATTGATGAAGCTTTGAAGAAAGGAGAAGATGCTGGGCTTGCTTTGGCGAAGAAAGTGTATGCCTACATTCACAAAAATGGGTATAAAACAAAGTTGATGGCTGCTGCCATACGCAACAAGCAAGATGTGTTTAGCCTCCTGGGGATTGACTACATCATTGCACCTCTGAAGATATTGCAGTCTTTGGAAGAATCTGTC ACTGATACTGACGTGAAGTATGGTTATGTCCCAAGGCTGACTCCTGCTCTTGGCAAAACGTACAACTTCACTGAAGAGGAGCTTGTGAAGTGGGACCAATTGAGTCTAGCAGCTGCAATGGGGCCAGCTGCGGAAGAACTACTTGCTTCTGGGTTGGAAGGATATGTGAACCAAGCACGCCGAGTGGAGGAACTCTTCGGGAAGATCTGGCCTCCTCCGAATGTTTGAACACATTCTATGATGAGGACCAGACCATGCCACAGTCTTCTATTCCAAAGAATAATAACAACAGCCACGGACAGTGCTGGCCAGCATTTGCTCGTTCCCTTCAAAGAATACTTCTCTTAGCCTGTCTGTGTTTGTACTTTGTAGTTCTCTAGCTATCTAGCAAATCTCACGAGGACATGTCAAGAACATCTTTGTTTTCTTTTCGCAAAGATTGGATA ] [-] EMBL CB663051 [ gtTTCAAAATTCCGGCTACATGGCAAGGTATAGAGGCCTCGAGGTTGCTTGAATCTGAAGGGATTCAAACACATTTAACATTTGTGTACAGTTTTGCCCAAGCAGCAGCTGCAGCACAAGCCGGTGCATCTGTTGTACAGATCTTTGTGGGACGTGTTCGGGATTGGGCAAGGACTCACTCTGGCGACCCAGAGATTGATGAAGCTTTGAAGAAAGGAGAAGATGCTGGGCTTGCTTTGGCGAAGAAAGTGTATGCCTACATTCACAAAAATGGGTATAAAACAAAGTTGATGGCTGCTGCCATACGCAACAAGCAAGATGTGTTTAGCCTCCTGGGGATTGACTACATCATTGCACCTCTGAAGATATTGCAGTCTTTGGAAGAATCTGTC ACTGATACTGACGTGAAGTATGGTTATGTCCCAAGGCTGACTCCTGCTCTTGGCAAAACGTACAACTTCACTGAAGAGGAGCTTGTGAAGTGGGACCAATTGAGTCTAGCAGCTGCAATGGGGCCAGCTGCGGAAGAACTACTTGCTTCTGGGTTGGAAGGATATGTGAACCAAGCACGCCGAGTGGAGGAACTCTTCGGGAAGATCTGGCCTCCTCCGAATGTTTGAACACATTCTATGATGAGGACCAGACCATGCCACAGTCTTCTATTCCAAAGAATAATAACAACAGCCACGGACAGTGCTGGCCAGCATTTGCTCGTTCCCTTCAAAGAATACTTCTCTTAGCCTGTCTGTGTTTGTACTTTGTAGTTCTCTAGCTATCTAGCAAATCTCACGATGACATGTCAAGAACATCTTTGTTTTCTTTTCGCAAAGATTGGATA ] [-] EMBL CB654342 [ ACATTTGTGTACAGTATTGCCCAAGCAGCAGCTGCAGCACAAGCCGGTGCATCTGTTGTACAGATCTTTGTGGGACGTGTTCGGGATTGGGCAAGGACTCACTCTGGCGACCCAGAGATTGATGAAGCTTTGAAGAAAGGAGAAGATGCTGGGCTTGCTTTGGTGAAGAAAGTGTATGCCTACATTCACAAAAATGGGTATAAAACAAAGTTGATGGCTGCTGCCATACGCAACAAGCAAGATGTGTTTAGCCTCCTGGGGATTGACTACATCATTGCACCTCTGAAGATATTGCAGTCTTTGGAAGAATCTGTCTACTGATACTGACGTGAAGTATGGTTATGTCCCAAGGCTGACTCCTGCTCTTGGCAAAACGTACAACTTCACTGAAGAGGAGCTTGTGAAGTGGGACCAATTGAGTCTAGCAGCTGCAATGGGGCCAGCTGCGGAAGAACTACTTGCTTATGGGTTGGAAGGATATGTGACCCAAGCACCCTGAGTGGAGGAACTATTCGGGAAGATCTGGCCTCCTCCGAATGTTTGAACACATTCTATGATGAGGACCAGACCATGCCACAGTCTTCTATTCCTAAGAATAATAGCAACACCCACGGACAGTGCTGGCCAGCATTTCATGGTTCCCTTCAAAGAATACTTCTCTTAGCCTGTATGTGTCAGTACTTTGTAGTTCTATAGCTA ] consensusID : consensus_11248#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [GATTACCGGGATGTCTTCCTCGAGTACTTTCATTTACGCCCCGATGAGATCGTTGCTACCCCACGTGANACAGTGTCACCCCAGAAGTGCCTCTGCCGTGGACTTGTTTCCTGAAGGTCTGAACTGAATCTTCAGAGTTGCAGTTACTTATCACTACGTTTTTTTGTAAAAAGATGGGTGCCATCAGCTAGTACCTGTGAATTCCCATTTTCAGTAAAATGGAAGNCATGCTGATGAAAAAAATGCTGGTCAAAA] [+] EMBL BQ906377 [GATTACCGGGATGTCTTCCTCGAGTACTTTCATTTACGCCCCGATGAGATCGTTGCTACCCCACGTGANACAGTGTCACCCCAGAAGTGCCTCTGCCGTGGACTTGTTTCCTGAAGGTCTGAACTGAATCTTCAGAGTTGCAGTTACTTATCACTACGTTTTTTTGTAAAAAGATGGGTGCCATCAGCTAGTACCTGTGAATTCCCATTTTCAGTAAAATGGAAGNCATGCTGATGAAAAAAATGCTGGTCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11248#0 -------------------AGTTAGCATCTCGCCATTCCTCCGATCCCCACCTCCACCAA 41 consensus_11248#1 CTCCCTCATTCTCTCCCACAGTTAGCATCTCGCCATTCCTCCGATCCCCACCTCCACCAA 60 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TGGCGCTCTCCATCTCCACGCCGCCGACCTCCTCCTCCCTCCTGCCGGCCTCCCTCCAGG 101 consensus_11248#1 TGGCGCTCTCCATCTCCACGCCGCCGACCTCCTCCTCCCTCCTGCCGGCCTCCCTCCAGG 120 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TCGGCAGGTGGAGCTCGTCGGCGGCGATGTCGGCCAGGCCTGTGGCTTTTAGCCTCCGGA 161 consensus_11248#1 TCGGCAGGTGGAGCTCGTCGGCGGCGATGTCGGCCGGGCCTGTGGCCTTTAGCCTCCGGA 180 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 GGCCGGTTCTTGCGGCCCGTGTAGCCGCCGGCGGCAACGCACCGTCTTCCTCCGTGGACG 221 consensus_11248#1 GGCCGGTTCTTGCGGCCCGTGTAGCCGCCGGCGGCAACGCACCGTCTTCCTCCGTGGACG 240 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 AGGTGGTCACTGAGCTCGATGCCGTGGCCAGCTTCAGCGAGATCGTGCCGGATACCGTCG 281 consensus_11248#1 AGGTGGTCACTGAGCTCGATGCCGTGGCCAGCTTCAGCGAGATCGTGCCGGATACCGTCG 300 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TGTTCGATGACTTCGAGAAGTTTGCGCCGACCGCCGCCACGGTGAGCTCGTCGCTGCTGC 341 consensus_11248#1 TGTTCGATGACTTCGAGAAGTTTGCGCCGACCGCCGCCACGGTGAGCTCGTCGCTGCTGC 360 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TCGGTATCGCTGGCCTCCCGGATACAAAGTTCAAGAGTGCTATAGATACAGCGTTGGCAG 401 consensus_11248#1 TCGGTATCGCTGGCCTCCCGGATACAAAGTTCAAGAGTGCTATAGATACAGCATTGGCAG 420 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 ACGGTGAATGTAACACAATGGAGAAGCCCGAGGACCGGATGTCCTGTTTCCTAACCAAGG 461 consensus_11248#1 ACGGTGAATGTAACACAATGGAGAAGCCCGAGGACCGGATGTCCTGTTTCCTAACCAAGG 480 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 CCCTGGCAAATGTTGGAGCTGAAATGGCTCATCTAGTCCCTGGTCGGGTGTCGACTGAAA 521 consensus_11248#1 CCCTGGCAAATGTTGGAGCTGAAATGGCTCATCTAGTCCCTGGTCGGGTGTCGACTGAAA 540 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TAGATGCTCGGTTGGCTTATGATACCCAAGGAATTATCCAGAGGGTGCATGAGCTTTTGA 581 consensus_11248#1 TAGATGCTCGGTTGGCTTATGATACCCAAGGAATTATCCAGAGGGTGCATGAGCTTTTGA 600 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 AGCTATACAGTGATCATGATGTCTTATCTGAACGCCTGCTGTTCAAAATTCCGGCTACAT 641 consensus_11248#1 AGCTATACAGTGATCATGATGTCTTATCTGAACGCCTGCTGTTCAAAATTCCGGCTACAT 660 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 GGCAAGGTATAGAGGCCTCGAGGTTGCTTGAATCTGAAGGGATTCAAACACATTTAACAT 701 consensus_11248#1 GGCAAGGTATAGAGGCCTCGAGGTTGCTTGAATCTGAAGGGATTCAAACACATTTAACAT 720 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TTGTGTACAGGTATGTACATATGCTTTGCCTAATTTGATCATGGCCCTATTTCTTATAGT 761 consensus_11248#1 TTGTGTACAG-------------------------------------------------- 730 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 GGGCAATGGTATAGATGCTGGGTGTATGGCAATACTTATCTTTTTTGTGGGGTTAGAGAA 821 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 CTGCCTTCAATTTGTTTAGTCTTAAGATACTTCAGTAAGTATAAGGGAACTAATAAAGAT 881 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TGTTTCTTATTATCATGCATCACTTATTAATGATGGCTCAATTGCATTGTAAGTATACAT 941 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TTTGCTTTTATGTCAGCAGAAGAAGAGGTTTTCTATTGAATTTACCTGGTGAATTGTAAT 1001 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TACTCAATTAGGCCTGACTAGTTACTGTTGATAACAAGCTTATCTATAAAGGACTTGCAC 1061 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TATTGCAGGTGCATAAAAGCCATAAACTTACTCTTGCAATTTACATAAGATGGTATTGTT 1121 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 GGAGAGAGCAGACTGCAGGATGTGTAGCTCACCTAGTAGTTAGTAACTGAGAACTCGTAA 1181 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TCATTTTTTTTGTGTGCCTGATCATTCTTCTTCAGTTTTGCCCAAGCAGCAGCTGCAGCA 1241 consensus_11248#1 -----------------------------------TTTTGCCCAAGCAGCAGCTGCAGCA 755 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 CAAGCCGGTGCATCTGTTGTACAGATCTTTGTGGGACGTGTTCGGGATTGGGCAAGGACT 1301 consensus_11248#1 CAAGCCGGTGCATCTGTTGTACAGATCTTTGTGGGACGTGTTCGGGATTGGGCAAGGACT 815 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 CACTCTGGCGACCCAGAGATTGATGAAGCTTTGAAGAAAGGAGAAGATGCTGGGCTTGCT 1361 consensus_11248#1 CACTCTGGCGACCCAGAGATTGATGAAGCTTTGAAGAAAGGAGAAGATGCTGGGCTTGCT 875 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TTGGCGAAGAAAGTGTATGCCTACATTCACAAAAATGGGTATAAAACAAAGTTGATGGCT 1421 consensus_11248#1 TTGGTGAAGAAAGTGTATGCCTACATTCACAAAAATGGGTATAAAACAAAGTTGATGGCT 935 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 GCTGCCATACGCAACAAGCAAGATGTGTTTAGCCTCCTGGGGTATTTTTCTTATTACAGA 1481 consensus_11248#1 GCTGCCATACGCAACAAGCAAGATGTGTTTAGCCTCCTGGGG------------------ 977 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TCAAGATTGATCGCAATGGATGTTAGTTTGTACAGAACTAATATTTCTGAAATGTAGGAT 1541 consensus_11248#1 ----------------------------------------------------------AT 979 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TGACTACATCATTGCACCTCTGAAGATATTGCAGTCTTTGGAAGAATCTGTCACTGATAC 1601 consensus_11248#1 TGACTACATCATTGCACCTCTGAAGATATTGCAGTCTTTGGAAGAATCTGTCACTGATAC 1039 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TGACGTGAAGTATGGTTATGTCCCAAGGCTGACTCCTGCTCTTGGCAAAACGTACAACTT 1661 consensus_11248#1 TGACGTGAAGTATGGTTATGTCCCAAGGCTGACTCCTGCTCTTGGCAAAACGTACAACTT 1099 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 CACTGAAGAGGAGGTTTGCTCACTTATCCTGGATTTTGTGCAGAGTCTTATATCATGCAT 1721 consensus_11248#1 CACTGAAGAGGAG----------------------------------------------- 1112 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TCTGTAGCTCCACCAAACTACTCGCTATAAGAGACTCATATTAGGGGTGTGATGTTTTAT 1781 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 CTAAAATATATAGGATCTTCACTTGTCATGTGCTTTAACACTACTAGAGATGAAATAAGG 1841 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 AAGGAAAATAATATTTGGACTGTTTAGATCACCCTTAAAAGGTCATGTCAAAGCTCGTAG 1901 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TAGGTGTAATCATGATTCACCAAACAGTTACTAGAACAATACAAACAAGTCATTGACATC 1961 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 CTATAAGAAGAGGAAAAATAAAACAAGAGAAGATAAGTGATTATATTTTTTATATGGCAC 2021 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 CTTCATGCTAACTGTTCATATTTCAAATGATACCACGAATGCAGCTTGTGAAGTGGGACC 2081 consensus_11248#1 --------------------------------------------CTTGTGAAGTGGGACC 1128 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 AATTGAGTCTAGCAGCTGCAATGGGGCCAGCTGCGGAAGAACTACTTGCTTCTGGGTTGG 2141 consensus_11248#1 AATTGAGTCTAGCAGCTGCAATGGGGCCAGCTGCGGAAGAACTACTTGCTTCTGGGTTGG 1188 consensus_11248#2 ------------------------------------------------------GATTAC 6 * ** consensus_11248#0 AAGGATATGTGAACCAAGCACGCCGAGTGGAGGAACTCTTCGGGAAGATCTGGCCTCCTC 2201 consensus_11248#1 AAGGATATGTGAACCAAGCACGCCGAGTGGAGGAACTCTTCGGGAAGATCTGGCCTCCTC 1248 consensus_11248#2 CGGGATGTCTTCCTCGAGTACTTTCATTT-----ACGCCCCGATGAGATCGTTGCTACCC 61 **** * * * ** ** * * ** * ** ***** ** * * consensus_11248#0 CGAATGTTTGAACACATTCTATGATGAGGACCAGACCATGCCACAGTCTTCTATTCCAAA 2261 consensus_11248#1 CGAATGTTTGAACACATTCTATGATGAGGACCAGACCATGCCACAGTCTTCTATTCCAAA 1308 consensus_11248#2 CACGTG-----ANACAGTGTCACCCCAGAAGT-GCCTCTGCCGTGGACTTGTTTCCTGAA 115 * ** * *** * * ** * * * **** * *** * * * ** consensus_11248#0 GAATAATAAC-AACAGCCACGGACAGTGCTGGCCAGCATTTGCTCGTTCCCTTCAAAGAA 2320 consensus_11248#1 GAATAATAAC-AACAGCCACGGACAGTGCTGGCCAGCATTTGCTCGTTCCCTTCAAAGAA 1367 consensus_11248#2 GGTCTGAACTGAATCTTCAGAGTTGCAGTTACTTATCACTACGTTTTTTTGTAAAAAGAT 175 * * ** ** * * * * ** * * ** * ***** consensus_11248#0 TACTTCTCTTAGCCTGTCTGTGTTTGTAC---TTTGTAGTTCTCTAGCTATCTAGCAAAT 2377 consensus_11248#1 TACTTCTCTTAGCCTGTCTGTGTTTGTAC---TTTGTAGTTCTCTAGCTATCTAGCAAAT 1424 consensus_11248#2 GGGTGCCATCAGCTAGTACCTGTGAATTCCCATTTTCAGTAAAATGGAAGNCATGCTGAT 235 * * * *** ** *** * * *** *** * * * ** ** consensus_11248#0 CTCACGATGACATGTCAAGAACATCTTTGTTTTCTTTTCGCAAAGATTGGATACGGATTT 2437 consensus_11248#1 CTCACGATGACATGTCAAGAACATCTTTGTTTTCTTTTCGCAAAGATTGGATACGGATTC 1484 consensus_11248#2 GAAAAAAATGCTGGTCAAAA---------------------------------------- 255 * * * ***** * consensus_11248#0 TCTCGAGTATTTCATTAGCCCGTGAGATGTGTACCATGAAATGTCACCCAAATGCTCTGC 2497 consensus_11248#1 TCTCGAGTATTTCATTAGCCCGTGAGATGTGTACCATGAAATGTCACCCAAATGCTCTGC 1544 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TGGATTGTTCTGAAGTCTGAACTGAATCTTCAGAGTTGCAGTTACTTATCACTACGTTTT 2557 consensus_11248#1 TGGATTGTTCTGAAGTCTGAACTGAATCTTCAGAGTTGCAGTTACTTATCACTAC----- 1599 consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 TTTATAAAAAGATGGGTGCCATCAGCTAGTACTGTGAATTCCCATTTTCAGTAAAATGGA 2617 consensus_11248#1 ------------------------------------------------------------ consensus_11248#2 ------------------------------------------------------------ consensus_11248#0 AGA 2620 consensus_11248#1 --- consensus_11248#2 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||