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Oryza sativa
cluster # 11263 cluster # 11263       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11263#0 length = 1956 sequences # 3  
consensus_11263#1 length = 1475 sequences # 4  
consensus_11263#2 length = 683 sequences # 1  

consensusID : consensus_11263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1956
fasta sequence
                              [GGCGGCGAGATGGCGGACTGGGACGGGGTCCCGGCGAGGGAGCGGCGGCAGATGGAGGAGATCCTGCAGCTCGATATGGAGGAGCTCAACGTGGAGATGGTCAACGACGACGGCTCCTCCTCCGAGGAGGCGAACGGCGGCGACGACGGCGCCGACGCCTTCCTCAGGGAAGGAGTGGCTAGCACTTCTGGACAATTCACATTCAACACATCTCTAGCCTCGTTGCACACCTATCTTGGTGAGGTTGATGATACACGGGGTCGAGTTTCTCTCTTAGATGGTGGCACAATCCTCAGCTTGCCAATGCTATATCTTCAAGGTGTTGTCCTATTTCCTGGAGCTACCCTGCCTCTCAGACTAATTCAGGGTAGATTTGTAGCAGCTGTTGAGAAAGCTTTGAGGCAGGTCGATGCTCCATGCACAATTGGTGTGGTTCTCATGTACAAGCGACACAGTACTCGACATTATGCTAATGCTTCAGTTGGAACAACAGCCGAGATAAGACAACTTGGGAGGATGGATGATGGTTCATTAAATGTTGTAGCCCGTGGGCAGCAAAGATTTCGTCTGAAGCGTCATTGGATGGATGTTGATGGGGTGGTGTGGGGTGATGTCCAAATCATTGAAGAAGATACTCCTTTAAGAACCCCAAGGGATGCATTTGCACAGCTAGCATCATGTAACAGTTTACGGCAGCATACCTCCTCACCAGTTATCAGTTTGGATGTCTCTCCAATCAAACAACGGGATCATGTGGATTCAGAATTGGATTGTGGTACACCATCACCTAAAAGCACTGCAAGCAATCATTCAGCGATTGATTCAAGGATGTGCCATTCAGATTCACGATCCAGCAGTTCAATGAGATCTTCTAATGAAGATGGGCTTTTCATGCATGAGCAGTTTTACAGCCAGGAGCTACATCCTTTAAAAGGAAGTGCAGCAGTTCAGTCAGGCGAGAATACCAACATGGGTGAGGAGGATTTTTGTTTAACATCGCTCAGATCCTTGTCAAGTGCAGGAACAAGAGATACTAAGGAGCAGCGTCAGTACATTCTTCCAAAGCAACATTTTCAGGCACCATTATCATTTTGGCCTCGGTGGGCTTATCAAATGTACGATTCATATGCACTTGCTCGTAGGGCTGCAGACCTCTGGAGACAGATAATCACACACCCAAGCATGGATGATTACGTGAGAAAACCAGATCTTCTGTCATTTTCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATGGAATCTCGTATCGTCTTCGAAGGGAGA-TTCAGCTTCT-CAAGGCCTTT-AATCTCATAAAATGTAGATGCTGCAAGTCTCTCATAGCAAAGCGTAGCGACA-TGGTAGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCA-ATCCTCACGGTTTTGTCCA-TGAAACAATCA-CA-GTTAG-CA-GGGCA-ACTGGGCTTGCTCTTGATGGCA-ATCCTTCAA-CGGTTCA-CA-GCTGGTTTCCAGGATACTCGTGGACGATTGCATCATGTACGGA-CTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATCTGCGACCGAGATCCTTCTGGGGGATCCGTAGCTCCCAAATTGCAGATGATGCACAAGAACTAGATCAGGACGAATGATGCTCCGTGTACAGTAGTAAACTTTGTGTGCCCCTCCCTTTTTTCTTATGAAGTTATGGAAAACACTTTATTCTCTGGTCCATAGGCCTAGTTCTCCGTACCTGAGTAGTGGTCGTTGTGACGATCGCTATAGAATAACCACTTCCTCCTGTGTGTATTACACAACCATTGCCTTATGCTAAAGTTCCGTCACAGAATTTTCTGAAATGTAGTGTTACTAGAAATCCATAGTACAAGATGAATGATGATATGATCAGATGTTTCAAGCAATGGTTTGACATG]

[+] EMBL AK066030             [GGCGGCGAGATGGCGGACTGGGACGGGGTCCCGGCGAGGGAGCGGCGGCAGATGGAGGAGATCCTGCAGCTCGATATGGAGGAGCTCAACGTGGAGATGGTCAACGACGACGGCTCCTCCTCCGAGGAGGCGAACGGCGGCGACGACGGCGCCGACGCCTTCCTCAGGGAAGGAGTGGCTAGCACTTCTGGACAATTCACATTCAACACATCTCTAGCCTCGTTGCACACCTATCTTGGTGAGGTTGATGATACACGGGGTCGAGTTTCTCTCTTAGATGGTGGCACAATCCTCAGCTTGCCAATGCTATATCTTCAAGGTGTTGTCCTATTTCCTGGAGCTACCCTGCCTCTCAGACTAATTCAGGGTAGATTTGTAGCAGCTGTTGAGAAAGCTTTGAGGCAGGTCGATGCTCCATGCACAATTGGTGTGGTTCTCATGTACAAGCGACACAGTACTCGACATTATGCTAATGCTTCAGTTGGAACAACAGCCGAGATAAGACAACTTGGGAGGATGGATGATGGTTCATTAAATGTTGTAGCCCGTGGGCAGCAAAGATTTCGTCTGAAGCGTCATTGGATGGATGTTGATGGGGTGGTGTGGGGTGATGTCCAAATCATTGAAGAAGATACTCCTTTAAGAACCCCAAGGGATGCATTTGCACAGCTAGCATCATGTAACAGTTTACGGCAGCATACCTCCTCACCAGTTATCAGTTTGGATGTCTCTCCAATCAAACAACGGGATCATGTGGATTCAGAATTGGATTGTGGTACACCATCACCTAAAAGCACTGCAAGCAATCATTCAGCGATTGATTCAAGGATGTGCCATTCAGATTCACGATCCAGCAGTTCAATGAGATCTTCTAATGAAGATGGGCTTTTCATGCATGAGCAGTTTTACAGCCAGGAGCTACATCCTTTAAAAGGAAGTGCAGCAGTTCAGTCAGGCGAGAATACCAACATGGGTGAGGAGGATTTTTGTTTAACATCGCTCAGATCCTTGTCAAGTGCAGGAACAAGAGATACTAAGGAGCAGCGTCAGTACATTCTTCCAAAGCAACATTTTCAGGCACCATTATCATTTTGGCCTCGGTGGGCTTATCAAATGTACGATTCATATGCACTTGCTCGTAGGGCTGCAGACCTCTGGAGACAGATAATCACACACCCAAGCATGGATGATTACGTGAGAAAACCAGATCTTCTGTCATTTTCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATGGAATCTCGTATCGTCTTCGAAGGGAGA TTCAGCTTCT CAAGGCCTTT AATCTCATAAAATGTAGATGCTGCAAGTCTCTCATAGCAAAGCGTAGCGACA TGGTAGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCA ATCCTCACGGTTTTGTCCA TGAAACAATCA CA GTTAG CA GGGCA ACTGGGCTTGCTCTTGATGGCA ATCCTTCAA CGGTTCA CA GCTGGTTTCCAGGATACTCGTGGACGATTGCATCATGTACGGA CTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATCTGCGACCGAGATCCTTCTGGGGGATCCGTAGCTCCCAAATTGCAGATGATGCACAAGAACTAGATCAGGACGAATGATGCTCCGTGTACAGTAGTAAACTTTGTGTGCCCCTCCCTTTTTTCTTATGAAGTTATGGAAAACACTTTATTCTCTGGTCCATAGGCCTAGTTCTCCGTACCTGAGTAGTGGTCGTTGTGACGATCGCTATAGAATAACCACTTCCTCCTGTGTGTATTACACAACCATTGCCTTATGCTAAAGTTCCGTCACAGAATTTTCTGAAATGTAGTGTTACTAGAAATCCATAGTACAAGATGAATGATGATATGATCAGATGTTTCAAGCAATGGTTTGACATG]
[+] EMBL CF323799             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCAGTTATCAGTTTGGATGTCTCTCCAATCAAACAACGGGATCATGTGGATTCAGAATTGGATTGTGGTACACCATCACCTAAAAGCACTGCAAGCAATCATTCAGCGATTGATTCAAGGATGTGCCATTCAGATTCACGATCCAGCAGTTCAATGAGATCTTCTAATGAAGATGGGATTTTCATGCATGAGCAGTTTTACAGCCAGGAGCTACATCCTTTAAAAGGAAGTGCAGCAGTTCAGTCAGGCGAGAATACCAACATGGGTGAGGAGGATTTTTGTTTAACATCGCTCAGATCCTTGTCAAGTGCAGGAACAAGAGATACTAAGGAGCAGCGTCAGTACATTCTTCCAAAGCAACATTTTCAGGCACCATTATCATTTTGGCCTCGGTGGGCTTATCAAATGTACGATTCATATGCACTTGCTCGTAGGGCTGCAGACCTCTGGAGACAGATAATCACACACCCAAGCATGGATGATTACGTGAGAAAACCAGATCTTCTGTCATTTTCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATGGAATCTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BQ906515             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAATCTGTGAGAC CAAGCTACTGGAGATTGATGGAATCTCGTATCGTCTTCGAAGGGAGAGTTCAGCTNCTGCAAGGCCTTTGAATCTCAT AAATGTAGAT CTGCAAGTCTCTCATAGCCAAGCGTAGCGACACTGGTGGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCACATCCTCACGGTTTTGTCCACTGAAACCATCACCACGTTAGCCACGGGCACACTGGGCTTGCTCTTGATGGCANATCCTTCAACCGGTTCACCACGCTGGTTTCCAGGATACTCGTGGACGATTGCATCATGTACGGACCTGTGAGTCCAACATAGGCTGGTTGTTCCAAGCAACCCAGAAGAATCTGCGACCGAGATCCTTCTGGGGGATCCGTAGCTCCCNAATTGCAGATGATGCACAAGAACTAGATCAGGACGAATGATGCTCCGTGTACNGTAGNAAACTTTGTGTGCCCCT CCTTTTTTCTTATGAAGTTATGGAAAACACTTTAaaaaaaaaa                                                                                                                                                                                                           ]


>consensus_11263#0 GGCGGCGAGATGGCGGACTGGGACGGGGTCCCGGCGAGGGAGCGGCGGCAGATGGAGGAG ATCCTGCAGCTCGATATGGAGGAGCTCAACGTGGAGATGGTCAACGACGACGGCTCCTCC TCCGAGGAGGCGAACGGCGGCGACGACGGCGCCGACGCCTTCCTCAGGGAAGGAGTGGCT AGCACTTCTGGACAATTCACATTCAACACATCTCTAGCCTCGTTGCACACCTATCTTGGT GAGGTTGATGATACACGGGGTCGAGTTTCTCTCTTAGATGGTGGCACAATCCTCAGCTTG CCAATGCTATATCTTCAAGGTGTTGTCCTATTTCCTGGAGCTACCCTGCCTCTCAGACTA ATTCAGGGTAGATTTGTAGCAGCTGTTGAGAAAGCTTTGAGGCAGGTCGATGCTCCATGC ACAATTGGTGTGGTTCTCATGTACAAGCGACACAGTACTCGACATTATGCTAATGCTTCA GTTGGAACAACAGCCGAGATAAGACAACTTGGGAGGATGGATGATGGTTCATTAAATGTT GTAGCCCGTGGGCAGCAAAGATTTCGTCTGAAGCGTCATTGGATGGATGTTGATGGGGTG GTGTGGGGTGATGTCCAAATCATTGAAGAAGATACTCCTTTAAGAACCCCAAGGGATGCA TTTGCACAGCTAGCATCATGTAACAGTTTACGGCAGCATACCTCCTCACCAGTTATCAGT TTGGATGTCTCTCCAATCAAACAACGGGATCATGTGGATTCAGAATTGGATTGTGGTACA CCATCACCTAAAAGCACTGCAAGCAATCATTCAGCGATTGATTCAAGGATGTGCCATTCA GATTCACGATCCAGCAGTTCAATGAGATCTTCTAATGAAGATGGGCTTTTCATGCATGAG CAGTTTTACAGCCAGGAGCTACATCCTTTAAAAGGAAGTGCAGCAGTTCAGTCAGGCGAG AATACCAACATGGGTGAGGAGGATTTTTGTTTAACATCGCTCAGATCCTTGTCAAGTGCA GGAACAAGAGATACTAAGGAGCAGCGTCAGTACATTCTTCCAAAGCAACATTTTCAGGCA CCATTATCATTTTGGCCTCGGTGGGCTTATCAAATGTACGATTCATATGCACTTGCTCGT AGGGCTGCAGACCTCTGGAGACAGATAATCACACACCCAAGCATGGATGATTACGTGAGA AAACCAGATCTTCTGTCATTTTCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGA CAAAAGCTACTGGAGATTGATGGAATCTCGTATCGTCTTCGAAGGGAGATTCAGCTTCTC AAGGCCTTTAATCTCATAAAATGTAGATGCTGCAAGTCTCTCATAGCAAAGCGTAGCGAC ATGGTAGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCAATCCTCACGGTTTTGTC CATGAAACAATCACAGTTAGCAGGGCAACTGGGCTTGCTCTTGATGGCAATCCTTCAACG GTTCACAGCTGGTTTCCAGGATACTCGTGGACGATTGCATCATGTACGGACTGTGAGTCC AACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATCTGCGACCGAGATCCTTCTGGGGG ATCCGTAGCTCCCAAATTGCAGATGATGCACAAGAACTAGATCAGGACGAATGATGCTCC GTGTACAGTAGTAAACTTTGTGTGCCCCTCCCTTTTTTCTTATGAAGTTATGGAAAACAC TTTATTCTCTGGTCCATAGGCCTAGTTCTCCGTACCTGAGTAGTGGTCGTTGTGACGATC GCTATAGAATAACCACTTCCTCCTGTGTGTATTACACAACCATTGCCTTATGCTAAAGTT CCGTCACAGAATTTTCTGAAATGTAGTGTTACTAGAAATCCATAGTACAAGATGAATGAT GATATGATCAGATGTTTCAAGCAATGGTTTGACATG



consensusID : consensus_11263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1475
fasta sequence
                              [AGCGTCCTTACATTCTTCCAAAGCAACATTTTCAGGCACCATTATCATTTTGGCCTCGGTGGGCTTATCAAATGTACGATTCATATGCACTTGCTCGTAGGGCTGCAGACCTCTGGAGACAGATAATCACACACCCAAGCATGGATGATTACGTGAGAAAACCAGATCTTCTGTCATTTTCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATGGAATCTCGTATCGTCTTCGAAGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAATGTAGATGCTGCAAGGTAACTATCTACCATGTTTGGAATTGCTAATTTATCGAGCTTCTGATTGGAAGTAATGGACTTATTGTTGGCCATTTCGTTACTACTTTAAAAGAAGGTGAATTGTTTATGGTGGTGTTGTATGTTAATCATATGAGTCTGTCACCCGACAGCTCACCATTGCAATTTTTTGGACAACCCCTTAATTTTTCTTGAATTGCACAGTAGTTAAATATCTAACTGAATACACATACACAGACACACAGTATATGAGTTGGTCTATAATCAAGGAGTTTAAGCACTGTCAAGTTCTCCCTGTAGCGAAGTTATAATTCTGTTAATTGGTATCAACCACAAGTATTTAGCTAGTTTTCCATATAAAATGGATAACTATTCTAGGTCATCTGTATCGTAGCAATTTCATTTACCATGTCATGGCCTGCTAAATTATCTGTATGTACATCCCATTTTCATTTTTCAGCAGGGTATGACATGGTACAGTTTGTCGTTGTAGAATGCTGCAGCTGCAGCATTGGAAGAATTAGCACTAACATAAAATCAAACTACTTGATAGTTCATATTGATTTGCTGATTAGGCTCATTTGGCTGCTAGGAAAACAATGCTCCATGTAACCTGGTTTTCGTTGATCATAAACATTATTTGGAAATGGCGTGTAGTTACATCAAAGAATTTCAATACAAAGTTTATCACTCTGTGTTGACATGATTTGAACTATGGCAGTCTCTCATAGCAAAGCGTAGCGACATGGTAGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCTTGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGATACTCGTGGACGATTGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATTTGCGACCGAGATCCTTTTGGGGGATCCGTAGCTCCCTTTTTCTTATGAAGTTATGGAAAACACTTTATTCTCTGGTCCATAGGCCTAGTTCTCCGTACCTGAGTAGTGGTCGTTGTGACGATCGCTATAGAATAACCACTTCCTCCTGTGTGTATTACACAACCATTGCCTTATGAAGAAGTTCCGTCACAGAATTTTC]

[+] EMBL CB681356             [AGCGTCCTTACATTCTTCCAAAGCAACATTTTCAGGCACCATTATCATTTTGGCCTCGGTGGGCTTATCAAATGTACGATTCATATGCACTTGCTCGTAGGGCTGCAGACCTCTGGAGACAGATAATCACACACCCAAGCATGGATGATTACGTGAGAAAACCAGATCTTCTGTCATTTTCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATGGAATCTCGTATCGTCTTCGAAGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAATGTAGATGCTGCAAGGTAACTATCTACCATGTTTGGAATTGCTAATTTATCGAGCTTCTGATTGGAAGTAATGGACTTATTGTTGGCCATTTCGTTACTACTTTAAAAGAAGGTGAATTGTTTATGGTGGTGTTGTATGTTAATCATATGAGTCTGTCACCCGACAGCTCACCATTGCAATTTTTTGGACAACCCCTTAATTTTTCTTGAATTGCACAGTAGTTAAATATCTAACTGAATACACATACACAGACACACAGTATATGAGTTGGTCTATAATCAAGGAGTTTAAGCACTGTCAAGTTCTCCCTGTAGCGAAGTTATAATTCTGTTAATTGGTATCAACCACAAGTATTTAGCTAGTTTTCCATATAAAATGGATAACTATTCTAGGTCATCTGTATCGTAGCAATTTCATTTACCATGTCATGGCCTGCTAAATTATCTGTATGTACATCCCATTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB684867             [                                                                                                                                                                                                                                                                                      AAGGCCTTTAGTCTCATAAAATGAACATGCTGCAAGGCAACTATCTACCATGTTTGGAATTGCTAATTTATCGAGCTTCTGATTGGAAGTAATGGACTTATTGTTGGCCATTTCCTTACTACTTTAAAAGAATGTGAATTGTATATGGCGGTGTTGTATGTTAATCATATGAGTCTGTCACCCGACAGCTCACCATTGCAATTTTTTGGACAACCCCTTAATTTTTCTTGAATTGCACACTACTTAAATATCTAACTGAATACACATACTCACACACACAGTATATGAGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB681357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATTTACCATGTCATGGCCTGCTAAATTATCTGTATGTACATCCCATTTTCATTTTTCAGCAGGGTATGACATGGTACAGTTTGTCGTTGTAGAATGCTGCAGCTGCAGCATTGGAAGAATTAGCACTAACATAAAATCAAACTACTTGATAGTTCATATTGATTTGCTGATTAGGCTCATTTGGCTGCTAGGAAAACAATGCTCCATGTAACCTGGTTTTCGTTGATCATAAACATTATTTGGAAATGGCGTGTAGTTACATCAAAGAATTTCAATACAAAGTTTATCACTCTGTGTTGACATGATTTGAACTATGGCAGTCTCTCATAGCAAAGCGTAGCGACATGGTAGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCTTGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGATACTCGTGGACGATTGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATTTGCGACCGAGATCCTTTTGGGGGATCCGTAGCTCCCTTTTTCTTATGAAGTTATGGAAAACACTTTATTCTCTGGTCCATAGGCCTAGTTCTCCGTACCTGAGTAGTGGTCGTTGTGACGATCGCTATAGAATAACCACTTCCTCCTGTGTGTATTACACAACCATTGCCTTATGAAGAAGTTCCGTCACAGAATTTTC]
[-] EMBL CB684868             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATTTACCATGTCATGGCCTGCTAAATTATCTGTATGTACATCCCATTTTCATTTTTCAGCAGGGTATGACATGGTACAGTTTGTCGTTGTAGAATGCTGCAGCTGCAGCATTGGAAGAATTAGCACTAACATAAAATCAAACTACTTGATAGTTCATATTGATTTGCTGATTAGGCTCATTTGGCTGCTAGGAAAACAATGCTCCATGTAACCTGGTTTTCGTTGATCATAAACATTATTTGGAAATGGCGTGTAGTTACATCAAAGAATTTCAATACAAAGTTTATCACTCTGTGTTGACATGATTTGAACTATGGCAGTCTTTCATAGCAAAGCGTAGCGACATGGTAGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCTTGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGATACTCGTGGACGATTGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATTTGCGACCGAGATCCTTTTGGGGGATCCGTAGCTCCCTTTTTTTTATGAAGTTATGGAAAACACTTTATTCTTTGGTCCATAGGCCTAGTTCTCCGTACCTGAGTAGTGGTCGTTGTGACGATCGCTATAGAATAACCACTTCCTCCTGTGTGTATTACACAACCATTGCCTTATGCTAAAGTTCCGTCACAG       ]


>consensus_11263#1 AGCGTCCTTACATTCTTCCAAAGCAACATTTTCAGGCACCATTATCATTTTGGCCTCGGT GGGCTTATCAAATGTACGATTCATATGCACTTGCTCGTAGGGCTGCAGACCTCTGGAGAC AGATAATCACACACCCAAGCATGGATGATTACGTGAGAAAACCAGATCTTCTGTCATTTT CCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATG GAATCTCGTATCGTCTTCGAAGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAAT GTAGATGCTGCAAGGTAACTATCTACCATGTTTGGAATTGCTAATTTATCGAGCTTCTGA TTGGAAGTAATGGACTTATTGTTGGCCATTTCGTTACTACTTTAAAAGAAGGTGAATTGT TTATGGTGGTGTTGTATGTTAATCATATGAGTCTGTCACCCGACAGCTCACCATTGCAAT TTTTTGGACAACCCCTTAATTTTTCTTGAATTGCACAGTAGTTAAATATCTAACTGAATA CACATACACAGACACACAGTATATGAGTTGGTCTATAATCAAGGAGTTTAAGCACTGTCA AGTTCTCCCTGTAGCGAAGTTATAATTCTGTTAATTGGTATCAACCACAAGTATTTAGCT AGTTTTCCATATAAAATGGATAACTATTCTAGGTCATCTGTATCGTAGCAATTTCATTTA CCATGTCATGGCCTGCTAAATTATCTGTATGTACATCCCATTTTCATTTTTCAGCAGGGT ATGACATGGTACAGTTTGTCGTTGTAGAATGCTGCAGCTGCAGCATTGGAAGAATTAGCA CTAACATAAAATCAAACTACTTGATAGTTCATATTGATTTGCTGATTAGGCTCATTTGGC TGCTAGGAAAACAATGCTCCATGTAACCTGGTTTTCGTTGATCATAAACATTATTTGGAA ATGGCGTGTAGTTACATCAAAGAATTTCAATACAAAGTTTATCACTCTGTGTTGACATGA TTTGAACTATGGCAGTCTCTCATAGCAAAGCGTAGCGACATGGTAGTGATGTCTACTGAT GGTCCTCTTGGTGCGTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGC AGGGCAACTGGGCTTGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGA TACTCGTGGACGATTGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAA GCAACCAAGAAGAATTTGCGACCGAGATCCTTTTGGGGGATCCGTAGCTCCCTTTTTCTT ATGAAGTTATGGAAAACACTTTATTCTCTGGTCCATAGGCCTAGTTCTCCGTACCTGAGT AGTGGTCGTTGTGACGATCGCTATAGAATAACCACTTCCTCCTGTGTGTATTACACAACC ATTGCCTTATGAAGAAGTTCCGTCACAGAATTTTC



consensusID : consensus_11263#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence
                              [TGGATGATTACGTGAGAAAACCAGATTCTTCTGTCATTTTCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATGGAATCTCGTATTGTCTTCGAAGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAATGTAGATGCTGCAAGTCTCTCATAGCAAAGCGTAGCGACATGGTGGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCTTGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGATACTCGTGGACGATTGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATTTGCGACCGAGATCCTTTTGGGGGATCCGTAGCTCCCAAATTGCAGATGATGCCCAAGAACTAGATCAGGACGAATGATGCTCCGTGTACAGTAGTAAACTTTGTGTGCCCCTCCTTTTCTCTTATGAAGTTATGGAAAACCCTTTATTCTCTGGTCCATAGGCCTAGTTTTCCGTACCTGACTGAATAACCACTTCCTACTGTGTGTATTACACAACCATTGCCTTATGCTAAAGTTCCGTCCCAGAATTTTTTGAAAAAAAAAAAAA]

[-] EMBL CA762151             [TGGATGATTACGTGAGAAAACCAGATTCTTCTGTCATTTTCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATGGAATCTCGTATTGTCTTCGAAGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAATGTAGATGCTGCAAGTCTCTCATAGCAAAGCGTAGCGACATGGTGGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCTTGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGATACTCGTGGACGATTGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATTTGCGACCGAGATCCTTTTGGGGGATCCGTAGCTCCCAAATTGCAGATGATGCCCAAGAACTAGATCAGGACGAATGATGCTCCGTGTACAGTAGTAAACTTTGTGTGCCCCTCCTTTTCTCTTATGAAGTTATGGAAAACCCTTTATTCTCTGGTCCATAGGCCTAGTTTTCCGTACCTGACTGAATAACCACTTCCTACTGTGTGTATTACACAACCATTGCCTTATGCTAAAGTTCCGTCCCAGAATTTTTTGAAAAAAAAAAAAA]


>consensus_11263#2 TGGATGATTACGTGAGAAAACCAGATTCTTCTGTCATTTTCCATTGGAAGCAAACTTCCT GTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATGGAATCTCGTATTGTCTTCGA AGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAATGTAGATGCTGCAAGTCTCTC ATAGCAAAGCGTAGCGACATGGTGGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTC AATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCTTGCTCTT GATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGATACTCGTGGACGATTGCATCA TGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATTTGCGA CCGAGATCCTTTTGGGGGATCCGTAGCTCCCAAATTGCAGATGATGCCCAAGAACTAGAT CAGGACGAATGATGCTCCGTGTACAGTAGTAAACTTTGTGTGCCCCTCCTTTTCTCTTAT GAAGTTATGGAAAACCCTTTATTCTCTGGTCCATAGGCCTAGTTTTCCGTACCTGACTGA ATAACCACTTCCTACTGTGTGTATTACACAACCATTGCCTTATGCTAAAGTTCCGTCCCA GAATTTTTTGAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11263#0      GGCGGCGAGATGGCGGACTGGGACGGGGTCCCGGCGAGGGAGCGGCGGCAGATGGAGGAG 60
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      ------------------------------------------------------------
                                                                                   

consensus_11263#0      ATCCTGCAGCTCGATATGGAGGAGCTCAACGTGGAGATGGTCAACGACGACGGCTCCTCC 120
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      ------------------------------------------------------------
                                                                                   

consensus_11263#0      TCCGAGGAGGCGAACGGCGGCGACGACGGCGCCGACGCCTTCCTCAGGGAAGGAGTGGCT 180
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      ------------------------------------------------------------
                                                                                   

consensus_11263#0      AGCACTTCTGGACAATTCACATTCAACACATCTCTAGCCTCGTTGCACACCTATCTTGGT 240
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      ------------------------------------------------------------
                                                                                   

consensus_11263#0      GAGGTTGATGATACACGGGGTCGAGTTTCTCTCTTAGATGGTGGCACAATCCT--CAGCT 298
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      ---------------------------------------------AGCGTCCTTACATTC 15
                                                                                   

consensus_11263#0      TGCCAATGCTATATCTTCAAGG--TGTTGTCCTATTTCCTGGAGCTACCCTGCCTCTCAG 356
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      TTCCAAAGCAACATTTTCAGGCACCATTATCATTTTGGCCTCGGTGGGCTTATCAAATGT 75
                                                                                   

consensus_11263#0      ACTAATTCAGGGTAGATTTGTAGCAGCTGTTGAGAAAGCTTTGAGGCAGGTCGATGCTCC 416
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      AC-GATTCATA-TGCACTTGCTCGTAGGGCTGCAGACCTCTGGAGACAGATA---ATCAC 130
                                                                                   

consensus_11263#0      ATGCACAATTGGTGTGGTTCTCATGTACAAGCGACACAGTACTCGACATTATGCTAATGC 476
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      ACACCCAA---GCATGG-----ATGATTACGTGAGAAA--ACCAGATCTTCTGTCA-TTT 179
                                                                                   

consensus_11263#0      TTCAGTTGGAACAA-CAGCCGAGATAAGACAACTTGGGAGGATGGATGATGG---TTCAT 532
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      TCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGAT 239
                                                                                   

consensus_11263#0      TAAATGTTGTAGCCCGTGGGCAGCAAAGATTTCGTCTGAAGCGTCATTGGATGGATGTTG 592
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      GGAATCTCGTATCGTCTTCGAAGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAA 299
                                                                                   

consensus_11263#0      ATGGGGTGGTGTGGGGTGA-TGTCCAA-ATCATTGAAGAAGATACTCCTTTAAGAACCCC 650
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      TGTAGATGCTGCAAGGTAACTATCTACCATGTTTGGAATTGCTAATTTATCGAGCTTCTG 359
                                                                                   

consensus_11263#0      AAGGGATGCATTTG---CACAGCTAGC-ATCATGTAAC-AGTTTACGGCAGCATACCTCC 705
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      ATTGGAAGTAATGGACTTATTGTTGGCCATTTCGTTACTACTTTAAAAGAAGGTGAATTG 419
                                                                                   

consensus_11263#0      TCACCAGTTATCAGTTTGGATGTCTCTCCAATCAAACAACGGGATCATGTGG--ATTCAG 763
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      TTTATGGTGGTG---TTGTATGT-----TAATCATATGAGTCTGTCACCCGACAGCTCAC 471
                                                                                   

consensus_11263#0      AATTGGATTGTGGTACACCATCACCTAAAAGCACTGCAAGCAATCATTCAGCGATTGATT 823
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      CATTGCAATTTTTTGGACAACCCCTTAATTTTTCTTGAATTGCACAGTAGTTAAATATCT 531
                                                                                   

consensus_11263#0      CAAGGATGTGCCATTCAGATTCACGATCCAGCAGTTCAATGAGATCTTCTAATGAAGATG 883
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      AACTGA------ATACACATACACAGACACACAGTATA-TGAGTTGGTCTA-TAATCAAG 583
                                                                                   

consensus_11263#0      GGCTTTTCATGCATGAGCAGTTTTACAGCCAG--GAGCTACA-TCCTTTAAAAGGAAGTG 940
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      GAGTTTAAGCAC-TGTCAAGTTCTCCCTGTAGCGAAGTTATAATTCTGTTAATTGGTATC 642
                                                                                   

consensus_11263#0      CAGCAGTTCAGTCAGGCGAGAATACCAACATGGGTGAGGAGGATTTTTGTTTAACATCGC 1000
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      AACCACAAGTATTTAGCTAGTTTTCCAT-----ATAAAATGGATAACTATTCTAGGTCAT 697
                                                                                   

consensus_11263#0      TCAGATCCTTGTCAAGTGCAGGAACAAGAGATACTAAGGAGCAGCGTCAGTACATTCTTC 1060
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      CTGTATCGTAGCAATTTCATTTACCATGTCATGGCCTGCTAAATTATCTGTATGTACATC 757
                                                                                   

consensus_11263#0      CAAAGCAACATTTTCAGGCACCATTATCATTTTGGCCTCGGTGGGCTTATCAAATGTACG 1120
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      C-------CATTTTCATTTTTCAGCAGGGTAT-GACATGGTACAGTTTGTCGT-TGTAGA 808
                                                                                   

consensus_11263#0      ATTCATATGCACTTGCTCGTAGGGCTGCAGACCTCTGGA--GACAGATAATCACAC-ACC 1177
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      ATGC---TGCAGCTGC----AGCATTGGAAGAATTAGCACTAACATAAAATCAAACTACT 861
                                                                                   

consensus_11263#0      CAAGCATGGATGATTACGTGAGAAAACCAGAT-CTTCTGTCATTTTCCATTGGAAGCAAA 1236
consensus_11263#2      ------TGGATGATTACGTGAGAAAACCAGATTCTTCTGTCATTTTCCATTGGAAGCAAA 54
consensus_11263#1      TGATAGTTCATATTGATTTGCTG--ATTAGGCTCATTTGGC---TGCTAGGAAAACAATG 916
                             *  **  * *  **     *  **   * * ** *   * * *    **  *  

consensus_11263#0      CTTCCTGTATCAGAATCTGTGA-GACAAAAGCTACTGGAGATTGATGGAATCTCGTATCG 1295
consensus_11263#2      CTTCCTGTATCAGAATCTGTGA-GACAAAAGCTACTGGAGATTGATGGAATCTCGTATTG 113
consensus_11263#1      CTCCATGTAACCTGGTTTTCGTTGATCATAAACATTATTTGGAAATGGCGTGTAGTTACA 976
                       ** * **** *    * *  *  **  * *   * *        ****  * * **    

consensus_11263#0      TCTTCGAAGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAATGTAGATGCTGCAA 1355
consensus_11263#2      TCTTCGAAGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAATGTAGATGCTGCAA 173
consensus_11263#1      TCAAAGAATTTCAATACAAAGTTT--ATCACTCTGTGTTGACATGATTTGAACTATGGCA 1034
                       **   ***     ** **   * *  *   ** *    * * *  ** *  *   **  *

consensus_11263#0      GTCTCTCATAGCAAAGCGTAGCGACATGGTAGTGATGTCTACTGATGGTCCTCTTGGTGC 1415
consensus_11263#2      GTCTCTCATAGCAAAGCGTAGCGACATGGTGGTGATGTCTACTGATGGTCCTCTTGGTGC 233
consensus_11263#1      GTCTCTCATAGCAAAGCGTAGCGACATGGTAGTGATGTCTACTGATGGTCCTCTTGGTGC 1094
                       ****************************** *****************************

consensus_11263#0      GTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCT 1475
consensus_11263#2      GTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCT 293
consensus_11263#1      GTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCT 1154
                       ************************************************************

consensus_11263#0      TGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGATACTCGTGGACGAT 1535
consensus_11263#2      TGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGATACTCGTGGACGAT 353
consensus_11263#1      TGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGATACTCGTGGACGAT 1214
                       ************************************************************

consensus_11263#0      TGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAA 1595
consensus_11263#2      TGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAA 413
consensus_11263#1      TGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAA 1274
                       ************************************************************

consensus_11263#0      TCTGCGACCGAGATCCTTCTGGGGGATCCGTAGCTCCCAAATTGCAGATGATGCACAAGA 1655
consensus_11263#2      TTTGCGACCGAGATCCTTTTGGGGGATCCGTAGCTCCCAAATTGCAGATGATGCCCAAGA 473
consensus_11263#1      TTTGCGACCGAGATCCTTTTGGGGGATCCGTAGCTCCC---------------------- 1312
                       * **************** *******************                      

consensus_11263#0      ACTAGATCAGGACGAATGATGCTCCGTGTACAGTAGTAAACTTTGTGTGCCCCTCCCTTT 1715
consensus_11263#2      ACTAGATCAGGACGAATGATGCTCCGTGTACAGTAGTAAACTTTGTGTGCCCCTCC-TTT 532
consensus_11263#1      ----------------------------------------------------------TT 1314
                                                                                 **

consensus_11263#0      TTTCTTATGAAGTTATGGAAAACACTTTATTCTCTGGTCCATAGGCCTAGTTCTCCGTAC 1775
consensus_11263#2      TCTCTTATGAAGTTATGGAAAACCCTTTATTCTCTGGTCCATAGGCCTAGTTTTCCGTAC 592
consensus_11263#1      TTTCTTATGAAGTTATGGAAAACACTTTATTCTCTGGTCCATAGGCCTAGTTCTCCGTAC 1374
                       * ********************* **************************** *******

consensus_11263#0      CTGAGTAGTGGTCGTTGTGACGATCGCTATAGAATAACCACTTCCTCCTGTGTGTATTAC 1835
consensus_11263#2      CTGACT-------------------------GAATAACCACTTCCTACTGTGTGTATTAC 627
consensus_11263#1      CTGAGTAGTGGTCGTTGTGACGATCGCTATAGAATAACCACTTCCTCCTGTGTGTATTAC 1434
                       **** *                         *************** *************

consensus_11263#0      ACAACCATTGCCTTATGCTAAAGTTCCGTCACAGAATTTTCTGAAATGTAGTGTTACTAG 1895
consensus_11263#2      ACAACCATTGCCTTATGCTAAAGTTCCGTCCCAGAATTTTTTGAAAAAAAAAAAAA---- 683
consensus_11263#1      ACAACCATTGCCTTATGAAGAAGTTCCGTCACAGAATTTTC------------------- 1475
                       *****************   ********** *********                    

consensus_11263#0      AAATCCATAGTACAAGATGAATGATGATATGATCAGATGTTTCAAGCAATGGTTTGACAT 1955
consensus_11263#2      ------------------------------------------------------------
consensus_11263#1      ------------------------------------------------------------
                                                                                   

consensus_11263#0      G 1956
consensus_11263#2      -
consensus_11263#1      -
                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)