These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1128 fasta sequence [TCTCTCTCTCTCTCCCCTGTCCTCCCCGATTCCCAATCTCGCTCTCAAGTCGCAGCAGCACTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCGCGGGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCTTCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGGAGGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGCCTTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATGTACATTGAGCTCCCCAAGGGTGTGCCCACCAAGCTCTTTCACTGCGCCATCCAGGCCACTCATGTTGAGGTCGGCATCCGC-GGCAATCCACCCTACCTCAACCATGACCTGACACTCCCAGTGAAGACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGC-AAAAAAGAGAGAAGGGGAAAACATGGTCATCTCC-AATACAAGGCCAA-GGTA-GC-TTAGATCCATATG-CTGCAGACCAAGAACAAAAAC-GGCTTATGC-TGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATGCCGGGTCCTTTCAAAAAAAAAAAA] [+] EMBL AK061159 [TCTCTCTCTCTCTCCCCTGTCCTCCCCGATTCCCAATCTCGCTCTCAAGTCGCAGCAGCACTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCGCGGGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCTTCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGGAGGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGCCTTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATGTACATTGAGCTCCCCAAGGGTGTGCCCACCAAGCTCTTTCACTGCGCCATCCAGGCCACTCATGTTGAGGTCGGCATCCGC GGCAATCCACCCTACCTCAACCATGACCTGACACTCCCAGTGAAGACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGCAAAAAAAGAGAGAAGGGGAAAACATGGTCATCTCC AATACAAGGCCAA GGTA GC TTAGATCCATATG CTGCAGACCAAGAACAAAAAC GGCTTATGC TGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATGCC ] [+] EMBL AK101664 [ CCGATTCCCAATCTCGCTCTCAAGTCGCAGCAGCACTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCGCGGGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCTTCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGGAGGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGCCTTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATGTACATTGAGCTCCCCAAGGGTGTGCCCACCAAGCTCTTTCACTGCGCCATCCAGGCCACTCATGTTGAGGTCGGCATCCGC GGCAATCCACCCTACCTCAACCATGACCTGACACTCCCAGTGAAGACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGC AAAAAAGAGAGAAGGGGAAAACATGGTCATCTCC AATACAAGGCCAA GGTA GC TTAGATCCATATG CTGCAGACCAAGAACAAAAAC GGCTTATGC TGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATGCC ] [+] EMBL C27335 [ TCGCAGCAGCACTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCNGGTGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCTTCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTNTCGTCTCCTCCGCTCCTTGCGCCATCTCGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGANGGGGAGGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTAAGAAGCGGCACGNTTTCGTCCAAAACGGGCAGAA ] [+] EMBL AU081270 [ AGCAGCACTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCGCGGGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCTTCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCTCGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGGAGGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGCCTTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATGTACATTGAGC ] [+] EMBL OS1321752 [ gtatgCCAGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGANTTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATGTACATTGAGCTCCCCAAGGGTGTGCCCACCAAGCTCTTTCACTGCGCCATCCAGGCCACTCATGTTGAGGTCGGCATCCGC GGCAATCCACCCTACCTCAACCATGACCTGACACTCCCAGTGAAGACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGC AAAAAAGAGAGAAGGGGAAAACATGGTCATCTCCAAATACAAGGCCAANGGTAGGCTTTAGATCCATATGNTTGCAGACCAAGAACAAAAACGGGNTTATGCTTGCAAAGG ] [-] EMBL CA763425 [ tTTTCGATGGGCCATCCAGGCCAGTCATGTTGAGGTGGACATTCGCGGGCAATCCGCCCTACCTCAACCATGACCTGACACTCCCAGTGAAGACTGATTCATCCTTCTGGACAATAGAGGATGGTGAAATGCACATCCCACTGC AAAAAAGAGAGAAGGGGAAAACATGGTCATCTCC AATACAAGGCCAA GGTA GC TTAGATCCATATG CTGCAGACCAAGAACAAAAAC GGCTTATGC TGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCAAGCCAGACGTAGGATTCTAAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATGCCGGGTCCTTTCAAAAAAAAAAAA] [-] EMBL BI305483 [ AAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATGCCG ] consensusID : consensus_11269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [ATGGTGAAATGCACATCACACTGCAAAAAAGAGAGAAGGGGAAAACATGGTCATCTCCAATACAAGGCCAAGGTAGCTTAGATCCATATGCTGCAGACCAAGAACAAAAACGGCTTATGCTGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU081271 [ATGGTGAAATGCACATCACACTGCAAAAAAGAGAGAAGGGGAAAACATGGTCATCTCCAATACAAGGCCAAGGTAGCTTAGATCCATATGCTGCAGACCAAGAACAAAAACGGCTTATGCTGCAAAGGTTTCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATCTAGCATCCTTGATGATGTAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11269#0 TCTCTCTCTCTCTCCCCTGTCCTCCCCGATTCCCAATCTCGCTCTCAAGTCGCAGCAGCA 60 consensus_11269#1 ------------------------------------------------------------ consensus_11269#0 CTCAGCATCGCGGCGGCCGGGGCCCGGGGCAACGGCGACGAGGCGGCGCGCCGGCAGCGC 120 consensus_11269#1 ------------------------------------------------------------ consensus_11269#0 GGGCGCATCGGCTCCAAGCAGATACTCAAATATTCCCTGTTAACTAGAGTATCTTCCCCT 180 consensus_11269#1 ------------------------------------------------------------ consensus_11269#0 TCCCTTGGCGTAAAAGAAAAAAAATCTCCCGTCTCGTCTCCTCCGCTCCTTGCGCCATCT 240 consensus_11269#1 ------------------------------------------------------------ consensus_11269#0 CGCTGCTGAACAGGGGAGGGGCGCCGATCTCCATCCGGCGAGCAGAGCAGGGGAGGGGGA 300 consensus_11269#1 ------------------------------------------------------------ consensus_11269#0 GGGGAGGGGATCCTGAGCCTTGACATGGCAGAGAAATTGGGACCTGAGAAGCGGCACGCC 360 consensus_11269#1 ------------------------------------------------------------ consensus_11269#0 TTCGTCCACAACGGGCAGAAGGTCTTTGAGTGGGACCAAACACTGGAGGAAGTGAACATG 420 consensus_11269#1 ------------------------------------------------------------ consensus_11269#0 TACATTGAGCTCCCCAAGGGTGTGCCCACCAAGCTCTTTCACTGCGCCATCCAGGCCACT 480 consensus_11269#1 ------------------------------------------------------------ consensus_11269#0 CATGTTGAGGTCGGCATCCGCGGCAATCCACCCTACCTCAACCATGACCTGACACTCCCA 540 consensus_11269#1 ------------------------------------------------------------ consensus_11269#0 GTGAAGACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGCAA 600 consensus_11269#1 ----------------------------------ATGGTGAAATGCACATCACACTGCAA 26 ************************** consensus_11269#0 AAAAGAGAGAAGGGGAAAACATGGTCATCTCCAATACAAGGCCAAGGTAGCTTAGATCCA 660 consensus_11269#1 AAAAGAGAGAAGGGGAAAACATGGTCATCTCCAATACAAGGCCAAGGTAGCTTAGATCCA 86 ************************************************************ consensus_11269#0 TATGCTGCAGACCAAGAACAAAAACGGCTTATGCTGCAAAGGTTTCAAGAAGAGAATCCA 720 consensus_11269#1 TATGCTGCAGACCAAGAACAAAAACGGCTTATGCTGCAAAGGTTTCAAGAAGAGAATCCA 146 ************************************************************ consensus_11269#0 GGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATG 780 consensus_11269#1 GGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATG 206 ************************************************************ consensus_11269#0 GGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTG 840 consensus_11269#1 GGTGGAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTG 266 ************************************************************ consensus_11269#0 CTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTG 900 consensus_11269#1 CTAACCTCACAGTGGCTTGTCAAATAATCAAATGTGGTGGCTGTACATATCTCGCATCTG 326 ************************************************************ consensus_11269#0 TAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAA 960 consensus_11269#1 TAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCTTAGAAATAATGGTGAA 386 ************************************************************ consensus_11269#0 TGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATT 1020 consensus_11269#1 TGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATT 446 ************************************************************ consensus_11269#0 GATCTAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGA 1080 consensus_11269#1 GATCTAGCATCCTTGATGATGTAAAAAAAAAAAAAAAAAAAA------------------ 488 *********************** ** * * * consensus_11269#0 ATGAAAATATACCATCTACCCATGCCGGGTCCTTTCAAAAAAAAAAAA 1128 consensus_11269#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||