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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1172 fasta sequence
[GCCGAAAGCTTTTCTCAGCCCGAGAGATCCGCTGCGAGGGCGCCCCCAACCCGACGGTCGCCGGAGAAGCAGCAGCCGCCGCCCACCCACCCATCCAGTCGATGGCGCCGCCGGATACCAGCCGCGCGCCGGCGCAAGGCGAGGAAGCCGCCTCCACATCCCCGTGGCCTCTCCGGAAGCTCCAGAGTTTTACACCAGGGTTGTGTTCGCAGTACAAAGCTTATGAGAATGCATTTGTGGATATGGCTAAAGGAACTATTTCGGATGCAATGGTTCTTGTGAACGAGCACCAGACAGAGGCAATTGGATGTGCCACTGTGGCAGGATTCATCTTATTGAGAGGTCCTCGGAGATTTTTATACCGCAATACTCTGGGGCGTTTCAAGACTGAGAAGGATTTACTGAATGATGCTGAGCAAAGTATGATGGAGTACAAAACATCTATCGAACAGTTGAAAAAAGATTCAAAATACACCCTAGACAAAATAGCTGTTGGTGAAAGTGATTTGCAGCGTGGACAAACTGATTTGAGGTCTACTGGTAAGCAGATTCGATCTCTTATTGGTTCCATTTACAAGGCTGAATCCACAGCTACAGGTTTGATGGATCGACTCCGGACAATTCCAACCAGACAATCTCTTGAACTGCGAGCAGAGGTGGCTTCCATGGCCTCTGATTTGAAAAACCAGAGATGTGTTCTACAAGAAAGGATCAACAAAATATCTGAATATGGTGTCCGCGTCTGAACTTCAGTAATCATATTTCCCATGATACCACACTTGCCCTTCCAAGGTGGCAATAAACTGAATCACTGCAGGAGATGCTGTTTATCGTTTGATCAGGCCAGTACCATCTCCGGACTCTTAACCTTTTCTGTAAGCATTTTAAATAGGAGAGCAAACAAAATCACTCGCCATAACCATGGATTTCATGGCATATTCACTGTATTTCTGTGCTGCGCTTGCGCATTGTTCCTTCAGCTTATGTGATGTGTTTCCTGTAAGCAATCCTTTTGGCATTCTGGTTCAGAAGAACCCTCCGGCTGCTTTTTCCCACATGGGCCCCCTCATCGTACTACCAAGTTATGTGATATTCTGATGTAAGACATCTCTGCTCCAAGCCTCCAGGAAGGCCATAGGACAATGAAATTATGTTTCATTCTTCAAAAAAAA]
[+] EMBL AK059868 [GCCGAAAGCTTTTCTCAGCCCGAGAGATCCGCTGCGAGGGCGCCCCCAACCCGACGGTCGCCGGAGAAGCAGCAGCCGCCGCCCACCCACCCATCCAGTCGATGGCGCCGCCGGATACCAGCCGCGCGCCGGCGCAAGGCGAGGAAGCCGCCTCCACATCCCCGTGGCCTCTCCGGAAGCTCCAGAGTTTTACACCAGGGTTGTGTTCGCAGTACAAAGCTTATGAGAATGCATTTGTGGATATGGCTAAAGGAACTATTTCGGATGCAATGGTTCTTGTGAACGAGCACCAGACAGAGGCAATTGGATGTGCCACTGTGGCAGGATTCATCTTATTGAGAGGTCCTCGGAGATTTTTATACCGCAATACTCTGGGGCGTTTCAAGACTGAGAAGGATTTACTGAATGATGCTGAGCAAAGTATGATGGAGTACAAAACATCTATCGAACAGTTGAAAAAAGATTCAAAATACACCCTAGACAAAATAGCTGTTGGTGAAAGTGATTTGCAGCGTGGACAAACTGATTTGAGGTCTACTGGTAAGCAGATTCGATCTCTTATTGGTTCCATTTACAAGGCTGAATCCACAGCTACAGGTTTGATGGATCGACTCCGGACAATTCCAACCAGACAATCTCTTGAACTGCGAGCAGAGGTGGCTTCCATGGCCTCTGATTTGAAAAACCAGAGATGTGTTCTACAAGAAAGGATCAACAAAATATCTGAATATGGTGTCCGCGTCTGAACTTCAGTAATCATATTTCCCATGATACCACACTTGCCCTTCCAAGGTGGCAATAAACTGAATCACTGCAGGAGATGCTGTTTATCGTTTGATCAGGCCAGTACCATCTCCGGACTCTTAACCTTTTCTGTAAGCATTTTAAATAGGAGAGCAAACAAAATCACTCGCCATAACCATGGATTTCATGGCATATTCACTGTATTTCTGTGCTGCGCTTGCGCATTGTTCCTTCAGCTTATGTGATGTGTT ]
[+] EMBL AK071431 [ AAAGCTTTTCTCAGCCCGAGAGATCCGCTGCGAGGGCGCCCCCAACCCGACGGTCGCCGGAGAAGCAGCAGCCGCCGCCCACCCACCCATCCAGTCGATGGCGCCGCCGGATACCAGCCGCGCGCCGGCGCAAGGCGAGGAAGCCGCCTCCACATCCCCGTGGCCTCTCCGGAAGCTCCAGAGTTTTACACCAGGGTTGTGTTCGCAGTACAAAGCTTATGAGAATGCATTTGTGGATATGGCTAAAGGAACTATTTCGGATGCAATGGTTCTTGTGAACGAGCACCAGACAGAGGCAATTGGATGTGCCACTGTGGCAGGATTCATCTTATTGAGAGGTCCTCGGAGATTTTTATACCGCAATACTCTGGGGCGTTTCAAGACTGAGAAGGATTTACTGAATGATGCTGAGCAAAGTATGATGGAGTACAAAACATCTATCGAACAGTTGAAAAAAGATTCAAAATACACCCTAGACAAAATAGCTGTTGGTGAAAGTGATTTGCAGCGTGGACAAACTGATTTGAGGTCTACTGGTAAGCAGATTCGATCTCTTATTGGTTCCATTTACAAGGCTGAATCCACAGCTACAGGTTTGATGGATCGACTCCGGACAATTCCAACCAGACAATCTCTTGAACTGCGAGCAGAGGTGGCTTCCATGGCCTCTGATTTGAAAAACCAGAGATGTGTTCTACAAGAAAGGATCAACAAAATATCTGAATATGGTGTCCGCGTCTGAACTTCAGTAATCATATTTCCCATGATACCACACTTGCCCTTCCAAGGTGGCAATAAACTGAATCACTGCAGGAGATGCTGTTTATCGTTTGATCAGGCCAGTACCATCTCCGGACTCTTAACCTTTTCTGTAAGCATTTTAAATAGGAGAGCAAACAAAATCACTCGCCATAACCATGGATTTCATGGCATATTCACTGTATTTCTGTGCTGCGCTTGCGCATTGTTCCTTCAGCTTATGTGATGTGTTTCCTGTAAGCAATCTTTTTGGCATTCTGGTTCAGAAGAACCCTCCGGCTGCTTTTTCCCACATGGGCCCCCTCATCGTACTACCAAGTTATGTGATATTCTGATGTAAGACATCTCTGCTCCAAGCCTCCAGGAAGGCCATAGGACAATGAAATTATGT ]
[+] EMBL C27767 [ nAGCCCGANAGATCCGCTGCGAGGGCGCCCCCAACCCGACGGTCGCCGGAGAAGCAGCAGCCGCCGCCCACCCACCCATCCAGTCGATGGCGCCGCCGGATACCAGCCGCGCGCCGGCGCAAGGCGAGGAAGCCGCCTCCACATCCCCGTGGCCTCTCCGGAAGCTCCAGAGTTTTACACCAGGGTTGTNTTCGCAGTACAAAGCTTATGAGAATGCATTTTTGGATATGGCTAAAGGAACTATTTCGGATGCAATGGTTCTTGTGAACGAGCACCAGACAGAGGCAATTGGATGTGCCACTGTGGCAGGATTCATCTTATT AGAGGTCCTCGAGGATTTTTATACCG ]
[+] EMBL C74531 [ AGCCCGAGAGATCCGCTGCGAGGGCGCCCCCAACCCGACGGTCGCCGGAGAAGCAGCAGCCGCCGCCCACCCACCCATCCAGTCGATGGCGCCGCCGGATACCAGCCGCGCGCCGGCGCAAGGCGAGGAAGCCGCCTCCACATCCCCGTGGCCTCTCCGGAAGCTCCAGAGTTTTACACCAGGGTTGTGTTCGCAGTACAAAGCTTATGAGAATGCATTTGTGGATATGGCTAAAGGAACTATTTCGGATGCAATGGTTCTTGTGAACGAGCACCAGACAGAGGCAATTGGATGTGCCACTGTGGCAGGATTCATCTTATTtnaga ]
[+] EMBL CB096518 [ CTTATTGAGAGGTCCTCGGAGATTTTTATACCGCAATACTCTGGGGCGTTTCAAGACTGAGAAGGATTTACTGAATGATGCTGAGCAAAGTATGATGGAGTACAAAACATCTATCGAACAGTTGAAAAAAGATTCAAAATACACCCTAGACAAAATAGCTGTTGGTGAAAGTGATTTGCAGCGTGGACAAACTGATTTGAGGTCTACTGGTAAGCAGATTCGATCTCTTATTGGTTCCATTTACAAGGCTGAATCCACAGCTACAGGTTTGATGGATCGACTCCGGACAATTCCAACCAGACAATCTCTTGAACTGCGAGCAGAGGTGGCTTCCATGGCCTCTGATTTGAAAAACCAGAGATGTGTTCTACAAGAAAGGATTAACAAAATATCTGAATATGGTGTCCGCGTCTGAACTTCAGTAATCATATTTCCCATGATACCACACTTGCCCTTCCAAGGTGGCAATAAACTGAATCACTGCAGGAGATGCTGTTTATCGTTTGATCAGGCCAGTACCATCTCCGGACTCTTAACCTTTTCTATAAGCATTTTAAATAGGAGAGCAAACAAAATCACTCGCCATAACCATGGATTTCATGGCATATTCACTGTATTTCTGTGCTGCGCTTGCGCATTGTTCCTTCAGCTTATGTGATGTGTTTCCTGTAAGCAATCCTTTTGGCATTC ]
[+] EMBL AU092668 [ CTTATTGANAGGTCCTCGGAGATTTTTATACCGCAATACTCTGGGGCGTTTCAAGACTGAGAAGGATTTACTGAATGATGCTGAGCAAAGTATGATGGAGTACAAAACATCTATCGAACAGTTGAAAAAAGATTCAAAATACACCCTAGACAAAATAGCTGTTGGTGAAAGTGATTTGCAGCGTGGACAAACTGATTTGAGGTCTACTGGTAAGCAGATTCGATCTCTTATTGGTTCCATTTACAAGGCTGAATCCACAGCTACAGGTTTGATGGATCGACTCCGGACAATTCCAACCAGACAATCTCTTGAACTGCGAGCAGAGGTGGCTTCCATGGCCTCTGATTTGAAAAACCAGAGATGTGTTCTACAAGAAAGGATCAACAAAATATCTGAATATGGTGTCCGCGTCTGAACTTCAGTAATCATATTTCCCATGATACCACACTTGCCCTTCCAAGGTGGCAATAAACTGAATCACTGCAGGAGATGCTGTTTATCGTTTGATCAGGCCAGTACCATCTCCGGACTCTTAACCTTTTCTGTAAGCATTTTAAATAGGAGAGCAAACAAAATCACTCGCCATAACCATGGATTTCATGGCATATTCACTGTATTTCTGTGCTGCGCTTGCGCATTGTTCCTTCAGCTTATGTGATGTGTTTCATGTAANCAAaaa ]
[-] EMBL CA762590 [ GACAAACTGATNTGAGGTCTACTGGTAAGCAGATTCGATCTCTTATTGGTTCCATTTACAAGGCTGAATCCACAGCTACAGGTTTGATGGATCGACTCCGGACAATTCCAACCAGACAATCTCTTGAACTGCGAGCAGAGGTGGCTTCCATGGCCTCTGATTTGAAAAACCAGAGATGTGTTCTACAAGAAAGGATTAACAAAATATCTGAATATGGTGTCCGCGTCTGAACTTCAGTAATCATATTTCCCATGATACCACACTTGCCCTTCCAAGGTGGCAATAAACTGAATCACTGCAGGAGATGCTGTTTATCGTTTGATCAGGCCAGTACCATCTCCGGACTCTTAACCTTTTCTATAAGCATTTTAAATAGGAGAGCAAACAAAATCACTCGCCATAACCATGGATTTCATGGCATATTCACTGTATTTCTGTGCTGCGCTTGCGCATTGTTCCTTCAGCTTATGTGATGTGTTTCCTGTAAGCAATCCTTTTGGCATTCTGGTTCAGAAGAACCCTCCGGCTGCTTTTTCCCACATGGGCCCCCTGATCGTACTACCAAGTTATGTGATATTCTGATGTAAGACATCTCGGCTCCAAGCCTCCAGGAAGGCCATAGGACAATGAAATTATGTTTCATTCTTCAAAAAAAA]
consensusID : consensus_11283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[ACAATTCCAACCAGACAATCTCTTGAACTGCGAGCAGAGGTGGCTTCCATGGCCTCTGATTTGAAAAACCAGAGATGTGTTCTCCAAGAAAGGNTCNACAAAATATCTGAATATGGTGTCCGCGTCTGAACTTCAGTAANCATATTTCCCATGATACCACACTTGCCCTTCCAAGGTGGCAATAAACTGAATCNCTGCAGGAGATGCTGTTTATCGTTTGATCAGGCCAGTACCATCTCCGGACTCTTAACCTTTTCTGTAAGCATTTTAAATAGGAGAGCAAACAAAATCACTCGCCATAACCATGGATTTCATGGCATATTCACTGTATTTCTGTGCTGCGTTGCGCATTGTTCCTTCAGCTTATGTGATGTGTTTCCTGTAAGCAATCTTTTTGGCATTCTGGTTCAGAAGANCCCTCCGGCTGCTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094816 [ACAATTCCAACCAGACAATCTCTTGAACTGCGAGCAGAGGTGGCTTCCATGGCCTCTGATTTGAAAAACCAGAGATGTGTTCTCCAAGAAAGGNTCNACAAAATATCTGAATATGGTGTCCGCGTCTGAACTTCAGTAANCATATTTCCCATGATACCACACTTGCCCTTCCAAGGTGGCAATAAACTGAATCNCTGCAGGAGATGCTGTTTATCGTTTGATCAGGCCAGTACCATCTCCGGACTCTTAACCTTTTCTGTAAGCATTTTAAATAGGAGAGCAAACAAAATCACTCGCCATAACCATGGATTTCATGGCATATTCACTGTATTTCTGTGCTGCGTTGCGCATTGTTCCTTCAGCTTATGTGATGTGTTTCCTGTAAGCAATCTTTTTGGCATTCTGGTTCAGAAGANCCCTCCGGCTGCTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11283#0 GCCGAAAGCTTTTCTCAGCCCGAGAGATCCGCTGCGAGGGCGCCCCCAACCCGACGGTCG 60
consensus_11283#1 ------------------------------------------------------------
consensus_11283#0 CCGGAGAAGCAGCAGCCGCCGCCCACCCACCCATCCAGTCGATGGCGCCGCCGGATACCA 120
consensus_11283#1 ------------------------------------------------------------
consensus_11283#0 GCCGCGCGCCGGCGCAAGGCGAGGAAGCCGCCTCCACATCCCCGTGGCCTCTCCGGAAGC 180
consensus_11283#1 ------------------------------------------------------------
consensus_11283#0 TCCAGAGTTTTACACCAGGGTTGTGTTCGCAGTACAAAGCTTATGAGAATGCATTTGTGG 240
consensus_11283#1 ------------------------------------------------------------
consensus_11283#0 ATATGGCTAAAGGAACTATTTCGGATGCAATGGTTCTTGTGAACGAGCACCAGACAGAGG 300
consensus_11283#1 ------------------------------------------------------------
consensus_11283#0 CAATTGGATGTGCCACTGTGGCAGGATTCATCTTATTGAGAGGTCCTCGGAGATTTTTAT 360
consensus_11283#1 ------------------------------------------------------------
consensus_11283#0 ACCGCAATACTCTGGGGCGTTTCAAGACTGAGAAGGATTTACTGAATGATGCTGAGCAAA 420
consensus_11283#1 ------------------------------------------------------------
consensus_11283#0 GTATGATGGAGTACAAAACATCTATCGAACAGTTGAAAAAAGATTCAAAATACACCCTAG 480
consensus_11283#1 ------------------------------------------------------------
consensus_11283#0 ACAAAATAGCTGTTGGTGAAAGTGATTTGCAGCGTGGACAAACTGATTTGAGGTCTACTG 540
consensus_11283#1 ------------------------------------------------------------
consensus_11283#0 GTAAGCAGATTCGATCTCTTATTGGTTCCATTTACAAGGCTGAATCCACAGCTACAGGTT 600
consensus_11283#1 ------------------------------------------------------------
consensus_11283#0 TGATGGATCGACTCCGGACAATTCCAACCAGACAATCTCTTGAACTGCGAGCAGAGGTGG 660
consensus_11283#1 -----------------ACAATTCCAACCAGACAATCTCTTGAACTGCGAGCAGAGGTGG 43
*******************************************
consensus_11283#0 CTTCCATGGCCTCTGATTTGAAAAACCAGAGATGTGTTCTACAAGAAAGGATCAACAAAA 720
consensus_11283#1 CTTCCATGGCCTCTGATTTGAAAAACCAGAGATGTGTTCTCCAAGAAAGGNTCNACAAAA 103
**************************************** ********* ** ******
consensus_11283#0 TATCTGAATATGGTGTCCGCGTCTGAACTTCAGTAATCATATTTCCCATGATACCACACT 780
consensus_11283#1 TATCTGAATATGGTGTCCGCGTCTGAACTTCAGTAANCATATTTCCCATGATACCACACT 163
************************************ ***********************
consensus_11283#0 TGCCCTTCCAAGGTGGCAATAAACTGAATCACTGCAGGAGATGCTGTTTATCGTTTGATC 840
consensus_11283#1 TGCCCTTCCAAGGTGGCAATAAACTGAATCNCTGCAGGAGATGCTGTTTATCGTTTGATC 223
****************************** *****************************
consensus_11283#0 AGGCCAGTACCATCTCCGGACTCTTAACCTTTTCTGTAAGCATTTTAAATAGGAGAGCAA 900
consensus_11283#1 AGGCCAGTACCATCTCCGGACTCTTAACCTTTTCTGTAAGCATTTTAAATAGGAGAGCAA 283
************************************************************
consensus_11283#0 ACAAAATCACTCGCCATAACCATGGATTTCATGGCATATTCACTGTATTTCTGTGCTGCG 960
consensus_11283#1 ACAAAATCACTCGCCATAACCATGGATTTCATGGCATATTCACTGTATTTCTGTGCTGCG 343
************************************************************
consensus_11283#0 CTTGCGCATTGTTCCTTCAGCTTATGTGATGTGTTTCCTGTAAGCAATCCTTTTGGCATT 1020
consensus_11283#1 -TTGCGCATTGTTCCTTCAGCTTATGTGATGTGTTTCCTGTAAGCAATCTTTTTGGCATT 402
************************************************ **********
consensus_11283#0 CTGGTTCAGAAGAACCCTCCGGCTGCTTTTTCCCACATGGGCCCCCTCATCGTACTACCA 1080
consensus_11283#1 CTGGTTCAGAAGANCCCTCCGGCTGCTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA 462
************* ******************* * * * * * *
consensus_11283#0 AGTTATGTGATATTCTGATGTAAGACATCTCTGCTCCAAGCCTCCAGGAAGGCCATAGGA 1140
consensus_11283#1 AAAA-------------------------------------------------------- 466
*
consensus_11283#0 CAATGAAATTATGTTTCATTCTTCAAAAAAAA 1172
consensus_11283#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||