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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2018 fasta sequence
[TTCTTGCCTCTCGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTGTTGACGCTGCGGCCTCTTCCCGACCGCGCAGNAAAGATTTGAGGTCACCAATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTC-AAAAGTACAA-CCCTTACGT-GATTTTC-AAAGGT-GAACAAC-TCCCGGTTCCTATATGGGGACTGCCAGAGGAGAAGGTCCAAGNTTTTCATGATAGGTACTTTATTGCAAAAGACAAGAGTCGAGTTGAAGCCAGGAAGACTCTGAATAGGTTGTTAGAGGGGAACATCAATACAATTGAAAGGGGACATGGATATAAATTCAATATTCCAAAATATACAGATAACATGGAGTTTAATGAGGAAGTCAAGGTTTCTCTAGCAAAAGCAGGCAAGACCATAAGCCGTTCCTTTTGCAATGCGAATCAGCGGGAAGTTGCATCTAGGACTGGCTATACCATTGATCTAATAGAACGGACACTTGGGGCTGGATTGAACATCTCGAAGAGAACTGTCTTATACACAAACAAGGATCTGTTTGGGGATCAAAGTAAATCAGATCAAGCGATCAATGACATCTGCGCTTTGACAAATATCAGAAGGGGCTCTTTGGGTATAATAGCAGCTGAAAAAGGAATTGTAGTTGGAAACATTTTCCTGGAATTGACAAATGGCAAATCGATTAGTTGTTCTATTGGAGTGCAGATACCACACAGGCTTGACCAGATCAAAGATGTTTGTGTTGAAATAGGTTCACGCAACATAGAGTATATTCTTGTTGTGGAAAAGCATACAATGTTGAATTATCTACTAGAGATGGACTATCACACCAATAACAACTGTATAATTCTGACAGGATGTGGCATGCCAACCCTCCAAACAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACTACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGCTAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTGGGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACGTTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAG-CCAGTGAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGATCGAACTTCTAAGTGCGGTATTATTGTTAAGAGTAAATTGCAACTTGTGCCCAAAAAAAAAA]
[+] EMBL AK101363 [TTCTTGCCTCTCGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTGTTGACGCTGCGGCCTCTTCCCGACCGCGCAGCAAAGATTTGAGGTCACCAATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTC AAAAGTACAA CCCTTACGT GATTTTC AAAGGT GAACAAC TCCCGGTTCCTATATGGGAACTGCCAGAGGAGAAGGTCCAAGATTTTCATGATAGGTACTTTATTGCAAAAGACAAGAGTCGAGTTGAAGCCAGGAAGACTCTGAATAGGTTGTTAGAGGGGAACATCAATACAATTGAAAGGGGACATGGATATAAATTCAATATTCCAAAATATACAGATAACATGGAGTTTAATGAGGAAGTCAAGGTTTCTCTAGCAAAAGCAGGCAAGACCATAAGCCGTTCCTTTTGCAATGCGAATCAGCGGGAAGTTGCATCTAGGACTGGCTATACCATTGATCTAATAGAACGGACACTTGGGGCTGGATTGAACATCTCGAAGAGAACTGTCTTATACACAAACAAGGATCTGTTTGGGGATCAAAGTAAATCAGATCAAGCGATCAATGACATCTGCGCTTTGACAAATATCAGAAGGGGCTCTTTGGGTATAATAGCAGCTGAAAAAGGAATTGTAGTTGGAAACATTTTCCTGGAATTGACAAATGGCAAATCGATTAGTTGTTCTATTGGAGTGCAGATACCACACAGGCTTGACCAGATCAAAGATGTTTGTGTTGAAATAGGTTCACGCAACATAGAGTATATTCTTGTTGTGGAAAAGCATACAATGTTGAATTATCTACTAGAGATGGACTATCACACCAATAACAACTGTATAATTCTGACAGGATGTGGCATGCCAACCCTCCAAACAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACTACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGCTAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTGGGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACGTTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAG CCAGTGAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTT ]
[+] EMBL C28749 [ TCTCGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTTTTGACGCTGCGGCCTCTTCCCGACCGCGCA NAAAGATTTGAGGTCACCAATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTNAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTCAAAAAGTACAACCCCTTACGTGGATTTTCAAAAGGTGGAACAACTTCCCGGTTCCTATATGGGGACTGCCAGAGGAGAAGGTCCAAGNTTTTCATGAT ]
[+] EMBL C25860 [ CGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTGTTGACGCTGCGGCCTCTTCCCGACCGCGCAGAANAGATTTGAGGTCACCAATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTC AAAAGTACAA CCCTTACGT GATTTTC AAAGGT GAACAAC TTCCGGTTCCTATATGGGGACTGCCAGA GAGGAGGTCC AGGTTTTCATG TAGG ACTTa ]
[+] EMBL CB000025 [ TAATTCTGACAGGATGTGGCATGCCAACCCTCCCATCAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACTACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGCTAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTGGGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACGTTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAG CCAGTGAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTAC ]
[+] EMBL OSR16841A [ GGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAG CCAGTNAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATC ]
[+] EMBL BI806489 [ agaGCTTC TTTGA CTATT ATA TTTGGG TT A TA TTTCCAACCCATGTGC TCCGGA ATGATATAC AAGTACGAGAA GCTATGTTCAGGTTCAAGAG ATAGAGCCTCNAGACACTGAAGCCCAGTGAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGATCGAACTTCTAAGTGCGGTATTATTGTTAAGAGTAAATTGCAACTTGTGCCCAAAAAAAAAA]
[+] EMBL AU031779 [ CACTGAAN CCAGTGAGGANTGATTTGGAGGACTCTAATCCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGATCGAACTTCTAAaaa ]
consensusID : consensus_11315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence
[TCTAGGTGATCGATCTCTCCTAAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTTCTAGCACTATTGGGACTGAAGTTGTTTTTTCGCTGATCGAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU183690 [TCTAGGTGATCGATCTCTCCTAAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTTCTAGCACTATTGGGACTGAAGTTGTTTTTTCGCTGATCGAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11315#0 TTCTTGCCTCTCGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTGTTGACGC 60
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TGCGGCCTCTTCCCGACCGCGCAGNAAAGATTTGAGGTCACCAATGGATGATTCAACGGA 120
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAG 180
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 ATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAG 240
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAG 300
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTCAAAAGTACAACCCTTA 360
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 CGTGATTTTCAAAGGTGAACAACTCCCGGTTCCTATATGGGGACTGCCAGAGGAGAAGGT 420
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 CCAAGNTTTTCATGATAGGTACTTTATTGCAAAAGACAAGAGTCGAGTTGAAGCCAGGAA 480
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 GACTCTGAATAGGTTGTTAGAGGGGAACATCAATACAATTGAAAGGGGACATGGATATAA 540
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 ATTCAATATTCCAAAATATACAGATAACATGGAGTTTAATGAGGAAGTCAAGGTTTCTCT 600
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 AGCAAAAGCAGGCAAGACCATAAGCCGTTCCTTTTGCAATGCGAATCAGCGGGAAGTTGC 660
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 ATCTAGGACTGGCTATACCATTGATCTAATAGAACGGACACTTGGGGCTGGATTGAACAT 720
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 CTCGAAGAGAACTGTCTTATACACAAACAAGGATCTGTTTGGGGATCAAAGTAAATCAGA 780
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TCAAGCGATCAATGACATCTGCGCTTTGACAAATATCAGAAGGGGCTCTTTGGGTATAAT 840
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 AGCAGCTGAAAAAGGAATTGTAGTTGGAAACATTTTCCTGGAATTGACAAATGGCAAATC 900
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 GATTAGTTGTTCTATTGGAGTGCAGATACCACACAGGCTTGACCAGATCAAAGATGTTTG 960
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TGTTGAAATAGGTTCACGCAACATAGAGTATATTCTTGTTGTGGAAAAGCATACAATGTT 1020
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 GAATTATCTACTAGAGATGGACTATCACACCAATAACAACTGTATAATTCTGACAGGATG 1080
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TGGCATGCCAACCCTCCAAACAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACT 1140
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 ACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGC 1200
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTG 1260
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 GGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACG 1320
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGT 1380
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 ATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTAT 1440
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGT 1500
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 ACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAGCCAGTGA 1560
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 GGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTA 1620
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 AAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTC 1680
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 GTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTT 1740
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 CTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGAT 1800
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 CGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAG 1860
consensus_11315#1 ------------------------------------------------------------
consensus_11315#0 TTATCGTCTAGGTGATCGATCTCTCCTAA-GTGCTTGCACTATTGTTACTGAAGTTGTCT 1919
consensus_11315#1 ------TCTAGGTGATCGATCTCTCCTAAAGTGCTTGCACTATTGTTACTGAAGTTGTCT 54
*********************** ******************************
consensus_11315#0 T-CTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGATCGAACTTCTAAGTGCGGTATT 1978
consensus_11315#1 TTCTAGCACTATTGGGACTGAAGTTGTTTTTTCGCTGATCGAA-----AAAAAAAAAAAA 109
* ************* **** ********************** ** *
consensus_11315#0 ATTGTTAAGAGTAAATTGCAACTTGTGCCCAAAAAAAAAA 2018
consensus_11315#1 AAAANAAAAAAAAAAAAAAAA---------AAAAAAAAA- 139
* ** * *** ** *********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||