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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1907 fasta sequence
[CCCCCTACCAACGATCAGCTCAGCTTCAGCTTCTCCTCGGCATGTCCGCCGCCGCCGCCATCGCGTCGCCGATCCCGGCGGCGATCGCCGTCGTGCAGCAGCAGAGGCGGGGGAGGAGCCGCGGCGGCGGCTCCGGCGCTGCCGCCGTCCGCTGCTCCGCGGTGGCCCCGACGTCCGCGATCGCGCCCATCCTTGCCGACCTGAGGCTGCGGTGCGCCGCCCCGCTCCCCGTGCTGCGGCGCGTGGCGGACGCCATGGCCTCCGGGATGCGCGCCGGGCTGGCCGACGACGGCGCCGGCGAGCTCAAGATGATCCCCAGCCACGTCTACTCACTCCCCACTGGGAATGAAACAGGACTGTTTTATGCTCTGGACCTTGGAGGCACCAACTTTAGAGTGCTGAGGGTACAATTGGGAGGAAAAGATAAGCGCATTATAGATACCGAGTTTGAGCAAGTCTCGATCCCAAGAGAAATCATGCATGGTATAACCGAGGATTTGTTTGATTTCATCGCGAGTGGCCTGTCGAGATTTGTAGCAACGGAGGGTGATAAGTTTCATTTGCCACAAGGGAGAAAGAGAGAGTTAGGCTTCACATTCTCCTTTCCGGTGAATCAGACTTCTATT-GATTCTGGCATTCTGATCAAGTGGACAAAAGGTTTTGCTGTCTCTGGAACTGCTGGGAAAGATGTTGTTGCTTGTCTGAATGCTGCAATGGAGA-GGCAAGGCCTTGATATGCGTGTCTCTGCCTTGGTAAAT-GATACTGT-GGGAACCTTAGCT-GGAGCACGTTATTGGGACGATGA-CGTAATGGTCGCGGTGATTTTGGGCACTGGCACCAATGCATGCTACATTCAACGAACTGAAGCTATTCCAAAATTGCAACACCTTAAGCTT-GAAACAGGAAACACGATTATTAACACTGAGT-GGGGAGCTTTCTCAGATGGACTTCCATTGACTGAATTTGACAGAGAAAT-GGATGATGAGAGCATAAATCCTGGTGAACAGATATTCGAGAAGACGATTTCCGGGATGTATCTAGGTGAAATTGTCCGTAGGGTGCTGGTCAAGATGGCTGAAGTATCTGATCTCTTTGGTCATTCCTTCCCCAAGAAACTTGCTGAACCATTTGTTCTAAGGACACCACATCTATGCGCTATGCAACAAGACACCTCTGACAATCTTGGAGAAGTTGAGTCCATCTTGAGTGATGTCATCGGCGTGTCCCAAGCTTCTCTGCTGGCACGGAGAGTCACTGTAGAAGTCTCCGACTGCATCATCAGGAGAGGAGGCCGGTTGGCCGGGGCAGGAATCGTAGGGATCCTTGAGAAGATGGAGAATGACTCCAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGATGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGGTACATGAAGGAGGCTGTGGCTGAGCTACTGGGACCCGAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGATCAGGGATCGGCG-CTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAAT-CCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAGTTAAAAATTATCCTCAAAAAAAAAA]
[+] EMBL AF372832 [CCCCCTACCAACGATCAGCTCAGCTTCAGCTTCTCCTCGGCATGTCCGCCGCCGCCGCCATCGCGTCGCCGATCCCGGCGGCGATCGCCGTCGTGCAGCAGCAGAGGCGGGGGAGGAGCCGCGGCGGCGGCTCCGGCGCTGCCGCCGTCCGCTGCTCCGCGGTGGCCCCGACGTCCGCGATCGCGCCCATCCTTGCCGACCTGAGGCTGCGGTGCGCCGCCCCGCTCCCCGTGCTGCGGCGCGTGGCGGACGCCATGGCCTCCGGGATGCGCGCCGGGCTGGCCGACGACGGCGCCGGCGAGCTCAAGATGATCCCCAGCCACGTCTACTCACTCCCCACTGGGAATGAAACAGGACTGTTTTATGCTCTGGACCTTGGAGGCACCAACTTTAGAGTGCTGAGGGTACAATTGGGAGGAAAAGATAAGCGCATTATAGATACCGAGTTTGAGCAAGTCTCGATCCCAAGAGAAATCATGCATGGTATAACCGAGGATTTGTTTGATTTCATCGCGAGTGGCCTGTCGAGATTTGTAGCAACGGAGGGTGATAAGTTTCATTTGCCACAAGGGAGAAAGAGAGAGTTAGGCTTCACATTCTCCTTTCCGGTGAATCAGACTTCTATT GATTCTGGCATTCTGATCAAGTGGACAAAAGGTTTTGCTGTCTCTGGAACTGCTGGGAAAGATGTTGTTGCTTGTCTGAATGCTGCAATGGAGA GGCAAGGCCTTGATATGCGTGTCTCTGCCTTGGTAAAT GATACTGT GGGAACCTTAGCT GGAGCACGTTATTGGGACGATGA CGTAATGGTCGCGGTGATTTTGGGCACTGGCACCAATGCATGCTACATTCAACGAACTGAAGCTATTCCAAAATTGCAACACCTTAAGCTT GAAACAGGAAACACGATTATTAACACTGAGT GGGGAGCTTTCTCAGATGGACTTCCATTGACTGAATTTGACAGAGAAAT GGATGATGAGAGCATAAATCCTGGTGAACAGATATTCGAGAAGACGATTTCCGGGATGTATCTAGGTGAAATTGTCCGTAGGGTGCTGGTCAAGATGGCTGAAGTATCTGATCTCTTTGGTCATTCCTTCCCCAAGAAACTTGCTGAACCATTTGTTCTAAGGACACCACATCTATGCGCTATGCAACAAGACACCTCTGACAATCTTGGAGAAGTTGAGTCCATCTTGAGTGATGTCATCGGCGTGTCCCAAGCTTCTCTGCTGGCACGGAGAGTCACTGTAGAAGTCTCCGACTGCATCATCAGGAGAGGAGGCCGGTTGGCCGGGGCAGGAATCGTAGGGATCCTTGAGAAGATGGAGAATGACTCCAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGATGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGGTACATGAAGGAGGCTGTGGCTGAGCTACTGGGACCCGAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGATCAGGGATCGGCG CTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAAT CCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAaaaa ]
[+] EMBL AU031754 [ gagaaAGGCACCAACTTTAGAGTGCTGAGGGTACAATTGGGAGGAAAAGATAAGCGCATTATAGATACCGAGTTTGAGCAAGTCTCGATCCCAAGAGAAATCATGCATGGTATAACCGAGGATTTGTTTGATTTCATCGCGAGTGGCCTGTCGAGATTTGTAGCAACGGAGGGTGATAAGTTTCATTTGCCACAAGGGAGAAAGAGAGAGTTAGGCTTCACATTCTCCTTTCCGGTGAATCAGACTTCTATTGGATTCTGGCATTCTGATCAAGTGGACAAAAGGTTTTGCTGTCTCTGGAACTGCTGGGAAAGATGTTGTTGCTTGTCTGAATGCTGCAATGGAGAGGGCAAGGCCTTGATATGCGTGTCTCTGCCTTGGTAAATGGATACTGTGGGGAACCTTAGCTGGGAGCACGTTATTGGGACGATGACCGTAATGGTCGCGGTGATTTTGGGCACTGGCACCAATGCATGCTACATTCAACGAACTGAAGCTATTCCAAAATTGCAACACCTTAAGCTTGGAAACAGGAAACACGATTATTAACACTGAGTGGGGGAGCTTTCTCAGATGGACTTCCATTGACTGAATTTGACAGAGAAATGGGATGATGAGAGCATAAATCCTGGTG ACAGATATTCGAGAAGACGATTTCCGGGATGTATCTAGGTG AATTGTCCGTA GGTGCTGGc ]
[+] EMBL AK059853 [ GT GGGGAGCTTTCTCAGATGGACTTCCATTGACTGAATTTGACAGAGAAAT GGATGATGAGAGCATAAATCCTGGTGAACAGATATTCGAGAAGACGATTTCCGGGATGTATCTAGGTGAAATTGTCCGTAGGGTGCTGGTCAAGATGGCTGAAGTATCTGATCTCTTTGGTCATTCCTTCCCCAAGAAACTTGCTGAACCATTTGTTCTAAGGACACCACATCTATGCGCTATGCAACAAGACACCTCTGACAATCTTGGAGAAGTTGAGTCCATCTTGAGTGATGTCATCGGCGTGTCCCAAGCTTCTCTGCTGGCACGGAGAGTCACTGTAGAAGTCTCCGACTGCATCATCAGGAGAGGAGGCCGGTTGGCCGGGGCAGGAATCGTAGGGATCCTTGAGAAGATGGAGAATGACTCCAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGATGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGGTACATGAAGGAGGCTGTGGCTGAGCTACTGGGACCCGAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGATCAGGGATCGGCG CTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAAT CCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAGTTAAA ]
[+] EMBL AU057562 [ GATGTATCTAGGTGAAATTGTCCGTA GGTGCTGGTCAAGATGGCTGAAGTATCTGATCTCTTTGGTCATTCCTTCCCCAAGAAACTTGCTGAACCATTTGTTCTAAGGACACCACATCTATGCGCTATGCAACAAGACACCTCTGACAATCTTGGAGAAGTTGAGTCCATCTTGAGTGATGTCATCGGCGTGTCCCAAGCTTCTCTGCTGGCACGGAGAGTCACTGTAGAAGTCTCCGACTGCATCATCAGGAGAGGAGGCCGGTTGGCCGGGGCAGGAATCGTAGGGATCCTTGAGAAGATGGAGAATGACTCCAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGATGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGG ]
[+] EMBL AU031753 [ CATGAAGGAGGCTGTGGCTGAGCTACTGGGACCCGAGCGATCGAATCGTATCCCCATCGAGCACACGAAAGNCGGATCAGGGATCCGTGCCTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCNCAATTGTTATAATTGTTGAGTTACTGGNCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAAT CCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAGTTAAAGTTTATCCTCAAAAAAAAAA]
[+] EMBL AU166654 [ CGAGCGATCGAATCGGATCGCCATCGAGCACACGAAAGACGGATCAGGGATCGGCG CTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAATCCCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAAAAAAAAAa ]
[+] EMBL AU197800 [ GAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGATCAGGGATCGGCG CTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAAT CCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACNCCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAGTTAAAAA ]
consensusID : consensus_11319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence
[CNTTGCCGACCTGAGGCTGCGGTGCGCCGCCCGCTCCCCGTGCTGCGGCGCGTGGCGGACGCATGGCCTCCGGGATGCGCGCNGGGCTGGCCGACGACGGNGNCGGNNAGNTCAAGATGATCNTAAGCCACGTNTACTNACTANTCACTGGGAATNAAACAGGACTGTTTTATGCTCTGGACCTTGGAGGGA]
[+] EMBL AU068608 [CNTTGCCGACCTGAGGCTGCGGTGCGCCGCCCGCTCCCCGTGCTGCGGCGCGTGGCGGACGCATGGCCTCCGGGATGCGCGCNGGGCTGGCCGACGACGGNGNCGGNNAGNTCAAGATGATCNTAAGCCACGTNTACTNACTANTCACTGGGAATNAAACAGGACTGTTTTATGCTCTGGACCTTGGAGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11319#0 CCCCCTACCAACGATCAGCTCAGCTTCAGCTTCTCCTCGGCATGTCCGCCGCCGCCGCCA 60
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TCGCGTCGCCGATCCCGGCGGCGATCGCCGTCGTGCAGCAGCAGAGGCGGGGGAGGAGCC 120
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 GCGGCGGCGGCTCCGGCGCTGCCGCCGTCCGCTGCTCCGCGGTGGCCCCGACGTCCGCGA 180
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TCGCGCCCATCCTTGCCGACCTGAGGCTGCGGTGCGCCGCCCCGCTCCCCGTGCTGCGGC 240
consensus_11319#1 ----------CNTTGCCGACCTGAGGCTGCGGTGCGCCGCCC-GCTCCCCGTGCTGCGGC 49
* ****************************** *****************
consensus_11319#0 GCGTGGCGGACGCCATGGCCTCCGGGATGCGCGCCGGGCTGGCCGACGACGGCGCCGGCG 300
consensus_11319#1 GCGTGGCGGACGC-ATGGCCTCCGGGATGCGCGCNGGGCTGGCCGACGACGGNGNCGGNN 108
************* ******************** ***************** * ***
consensus_11319#0 AGCTCAAGATGATCCCCAGCCACGTCTACTCACTCCCCACTGGGAATGAAACAGGACTGT 360
consensus_11319#1 AGNTCAAGATGATCNTAAGCCACGTNTACTNACTANTCACTGGGAATNAAACAGGACTGT 168
** *********** ******** **** *** ********** ************
consensus_11319#0 TTTATGCTCTGGACCTTGGAGGCACCAACTTTAGAGTGCTGAGGGTACAATTGGGAGGAA 420
consensus_11319#1 TTTATGCTCTGGACCTTGGAGGGA------------------------------------ 192
********************** *
consensus_11319#0 AAGATAAGCGCATTATAGATACCGAGTTTGAGCAAGTCTCGATCCCAAGAGAAATCATGC 480
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 ATGGTATAACCGAGGATTTGTTTGATTTCATCGCGAGTGGCCTGTCGAGATTTGTAGCAA 540
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 CGGAGGGTGATAAGTTTCATTTGCCACAAGGGAGAAAGAGAGAGTTAGGCTTCACATTCT 600
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 CCTTTCCGGTGAATCAGACTTCTATTGATTCTGGCATTCTGATCAAGTGGACAAAAGGTT 660
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TTGCTGTCTCTGGAACTGCTGGGAAAGATGTTGTTGCTTGTCTGAATGCTGCAATGGAGA 720
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 GGCAAGGCCTTGATATGCGTGTCTCTGCCTTGGTAAATGATACTGTGGGAACCTTAGCTG 780
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 GAGCACGTTATTGGGACGATGACGTAATGGTCGCGGTGATTTTGGGCACTGGCACCAATG 840
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 CATGCTACATTCAACGAACTGAAGCTATTCCAAAATTGCAACACCTTAAGCTTGAAACAG 900
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 GAAACACGATTATTAACACTGAGTGGGGAGCTTTCTCAGATGGACTTCCATTGACTGAAT 960
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TTGACAGAGAAATGGATGATGAGAGCATAAATCCTGGTGAACAGATATTCGAGAAGACGA 1020
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TTTCCGGGATGTATCTAGGTGAAATTGTCCGTAGGGTGCTGGTCAAGATGGCTGAAGTAT 1080
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 CTGATCTCTTTGGTCATTCCTTCCCCAAGAAACTTGCTGAACCATTTGTTCTAAGGACAC 1140
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 CACATCTATGCGCTATGCAACAAGACACCTCTGACAATCTTGGAGAAGTTGAGTCCATCT 1200
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TGAGTGATGTCATCGGCGTGTCCCAAGCTTCTCTGCTGGCACGGAGAGTCACTGTAGAAG 1260
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TCTCCGACTGCATCATCAGGAGAGGAGGCCGGTTGGCCGGGGCAGGAATCGTAGGGATCC 1320
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TTGAGAAGATGGAGAATGACTCCAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGA 1380
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGGTACATGAAGGAGGCTGTGG 1440
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 CTGAGCTACTGGGACCCGAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGAT 1500
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 CAGGGATCGGCGCTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCT 1560
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 CTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACA 1620
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 AGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAATCCAAGCATATCA 1680
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTAC 1740
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAAC 1800
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 TTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTC 1860
consensus_11319#1 ------------------------------------------------------------
consensus_11319#0 ATCAGCTTATGTATTTGTATAGTTAAAAATTATCCTCAAAAAAAAAA 1907
consensus_11319#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||