These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1218 fasta sequence [TGGACAGCTTGAGCAAAGTACCTCAAACAAGAAGACAGGTATTGTCAAATGCGGAAACATCGAGTCATCCCTCCAGTAAAGATAAAGGAGGTGACGATAAGGACTTGGACAAGTCAGAGCTCTGGAGACCTTTAAATTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTATAGATCAAGTTCAGCTGCTAGGGGAAATCAGCCCACTGAATCTCCTAGTAGTGCAAATGCTAGCAGAACTAAGGCTAGGGAGTATCTGCTTAAGTCCAAAGTTCAAGATGAGAAGAAAGAAGTTCCTGTGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCCCAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTATGGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAACCCATTATTTGAGAATAAAAGATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCATGCAGAAGCTCAGTCTTCCAAGTGAGACT-GAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCA-CCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAG--TTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAGCTTGGTTGTATCCTGGATTAATGTTAAACTGATGTGGTACTAGACTGAAAATTGCTTCCAAATCCTAAACCATAAAAAAGGAAA] [+] EMBL AK102932 [TGGACAGCTTGAGCAAAGTACCTCAAACAAGAAGACAGGTATTGTCAAATGCGGAAACATCGAGTCATCCCTCCAGTAAAGATAAAGGAGGTGACGATAAGGACTTGGACAAGTCAGAGCTCTGGAGACCTTTAAATTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTATAGATCAAGTTCAGCTGCTAGGGGAAATCAGCCCACTGAATCTCCTAGTAGTGCAAATGCTAGCAGAACTAAGGCTAGGGAGTATCTGCTTAAGTCCAAAGTTCAAGATGAGAAGAAAGAAGTTCCTGTGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCCCAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTATGGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAACCCATTATTTGAGAATAAAAGATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCATGCAGAAGCTCAGTCTTCCAAGTGAGACT GAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCA CCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAG TTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAGCTTGGTTGTATCCTGGATTAATGTTAAACTGATGTGGTACTAGACTGAAAATTGCTTCCAA ] [+] EMBL AK122147 [TGGACAGCTTGAGCAAAGTACCTCAAACAAGAAGACAGGTATTGTCAAATGCGGAAACATCGAGTCATCCCTCCAGTAAAGATAAAGGAGGTGACGATAAGGACTTGGACAAGTCAGAGCTCTGGAGACCTTTAAATTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTATAGATCAAGTTCAGCTGCTAGGGGAAATCAGCCCACTGAGTCTCCTAGTAGTGCAAATGCTAGCAGAACTAAGGCTAGGGAGTATCTGCTTAAGTCCAAAGTTCAAGATGAGAAGAAAGAAGTTCCTGTGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCCCAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTATGGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAACCCATTATTTGAGAATAAAAGATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCATGCAGAAGCTCAGTCTTCCAAGTGAGACT GAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCA CCGGATTTGGCACAAGGTCGTGAAGTTCCGCCGCCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAGT TTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAGCTTGGTTGTATCCTGGATTAATGTTAAACTGATGTGGTACTAGACTGAAAATTGCT ] [+] EMBL CB647154 [TGGACAGCTTGAGCAAAGTACCTCAAACAAGAAGACAGGTATTGTCAAATGCGGAAACATCGAGTCATCCCTCCAGTAAAGATAAAGGAGGTGACGATAAGGACTTGGACAAGTCAGAGCTCTGGAGACCTTTAAATTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTATAGATCAAGTTCAGCTGCTAGGGGAAATCAGCCCACTGAATCTCCTAGTAGTGCAAATGCTAGCAGAACTAAGGCTAGGGAGTATCTGCTTAAGTCCAAAGTTCAAGATGAGAAGAAAGAAGTTCCTGTGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCCCAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTATGGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAACC ] [+] EMBL CB096956 [ GAAGAAAGAAGTTCCTGTGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCCCAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTATGGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAACCCATTATTTGAGAATAAAAGATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCATGCAGAAGCTCAGTCTTCCAAGTGAGACT GAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCACCCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGNTAG TTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAAAAAACTGGTGNTTANGNTGGTCAAAG ] [-] EMBL CB619245 [ GATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCATGCAGAAGCTCAGTCTTCCAAGTGAGACT GAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACGGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCA CCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAGTTTTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCCGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAGCTTGGTTGTATCCTGGATTAATGTTAAACTGACGTGGTACTAGACTGAAAATTGCTTCCAAATCCTAAACCATAAAAAAGGAAA] [-] EMBL CB647155 [ GTATATCATGCAGAAGCTCATTCTTCCAAGTGAGACTGGAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCA CCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCCCCATATATGGGAGGAGGATTTTTTTTTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAG TTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAGCTTGGTTGTATCCTGGATTAATGTTAAACTGATGTGGTACTAGACTGAAAATTGCTTCCAAATCTTAGGCCATAAgat ] consensusID : consensus_11320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [TGTGTTAGTTGGTCAAAGAGAGGATACATAATGTCAGTTGTACGGCTCTTCCCTTGGGAAGGGATTAAATTGGGCTTCAGTTGTTTATGGGACNGCAGCTTGTGGTATCCTGGATTAATGNTAAACTGATGTGGTACTAGACTGAAAATGTGCTTCCAAATCCTAAACCATAAGA] [+] EMBL BI805574 [TGTGTTAGTTGGTCAAAGAGAGGATACATAATGTCAGTTGTACGGCTCTTCCCTTGGGAAGGGATTAAATTGGGCTTCAGTTGTTTATGGGACNGCAGCTTGTGGTATCCTGGATTAATGNTAAACTGATGTGGTACTAGACTGAAAATGTGCTTCCAAATCCTAAACCATAAGA] consensusID : consensus_11320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence [TACGGGCCGGGCCAACAGCGCTGAGTCTTGAAACGAACCATCTTCAGATGTCCCACCAGACGACGATCACCGGATTTNNCAACATATCACCATATATGGGAGGAGGATTCTCTCNCTTCCNCCTCGATGACATATA] [+] EMBL AA750083 [TACGGGCCGGGCCAACAGCGCTGAGTCTTGAAACGAACCATCTTCAGATGTCCCACCAGACGACGATCACCGGATTTNNCAACATATCACCATATATGGGAGGAGGATTCTCTCNCTTCCNCCTCGATGACATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11320#0 TGGACAGCTTGAGCAAAGTACCTCAAACAAGAAGACAGGTATTGTCAAATGCGGAAACAT 60 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 CGAGTCATCCCTCCAGTAAAGATAAAGGAGGTGACGATAAGGACTTGGACAAGTCAGAGC 120 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 TCTGGAGACCTTTAAATTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTATAGATCAA 180 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 GTTCAGCTGCTAGGGGAAATCAGCCCACTGAATCTCCTAGTAGTGCAAATGCTAGCAGAA 240 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 CTAAGGCTAGGGAGTATCTGCTTAAGTCCAAAGTTCAAGATGAGAAGAAAGAAGTTCCTG 300 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 TGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCC 360 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 CAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTAT 420 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 GGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAA 480 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 CCCATTATTTGAGAATAAAAGATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCA 540 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 TGCAGAAGCTCAGTCTTCCAAGTGAGACTGAGGTTGAAATAAGCTGCTGCGGTCAGCCAG 600 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 TGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTC 660 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 GCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACG 720 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 GGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACG 780 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 ATCACCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCACCATAT 840 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 ATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCA 900 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 TACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAAT 960 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 TTGTTAGTTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGT 1020 consensus_11320#1 ------------------------------------------------------------ consensus_11320#2 ------------------------------------------------------------ consensus_11320#0 AGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTA 1080 consensus_11320#1 ------------------TGTGTTAGTTGGTCAAAGAGAGGATACATAATGTCAGTTGTA 42 consensus_11320#2 ----------------------------------------------TACGGGCCGGGCCA 14 ** * * * * consensus_11320#0 GCTGCTCTTCCCTTGG-AAGGGATTAAATTGG-CTTCAGTT-TTTAGTGGACTGCAGCTT 1137 consensus_11320#1 -CGGCTCTTCCCTTGGGAAGGGATTAAATTGGGCTTCAGTTGTTTATGGGACNGCAGCTT 101 consensus_11320#2 ACAGCGCTGAGTCTTGAAACGAACCAT------CTTCAGATGTC-------CCACCAGAC 61 * ** ** * * ** * * * ****** * * * * consensus_11320#0 GGTTGTATCCTGGATTAATGTTAAACTGATGTGGTACTAGACTGAAAAT-TGCTTCCAAA 1196 consensus_11320#1 G-TGGTATCCTGGATTAATGNTAAACTGATGTGGTACTAGACTGAAAATGTGCTTCCAAA 160 consensus_11320#2 GACGATCACCGGATTTNNCAACATATCACCATA-TATGGGAGGAGGATTCTCTCNCTTCC 120 * * ** * ** * * * ** ** * * * * consensus_11320#0 TCCTAAACCATAAAAAAGGAAA 1218 consensus_11320#1 TCCTAAACCATAAGA------- 175 consensus_11320#2 NCCTCGATGACATATA------ 136 *** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||