These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 847 fasta sequence [TAGGACAGAGGCTACAAATTAAAATGACCACACAACTTGTTAAGATCGGGACATGGGGTGGAAATGGAGGAGGTCGTGTAGACCTATCTGTACTCCCAAGGAGCTTGAAAAGCGTGACAATCCGTAGTGGTGCAGCCATTGATGCTATTGCCTTTACATACATTGGCACAGATGGGAAGGAACATCTTGCAGGTCCTTGG---GGTGGT---GGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGG-TTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCCCTCCAATCTCTCTCTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTATATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAA-GTTTACCTCACTAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTACATATGTACGTGGNTTATNTNTGATTATATATAAATNAAAGACTACTGGGATGNATTGGGCTTAAATGC] [+] EMBL CA755334 [TAGGACAGAGGCTACAAATTAAAATGACCACACAACTTGTTAAGATCGGGACATGGGGTGGAAATGGAGGAGGTCGTGTAGACCTATCTGTACTCCCAAGGAGCTTGAAAAGCGTGACAATCCGTAGTGGTGCAGCCATTGATGCTATTGCCTTTACATACATTGGCACAGATGGGAAGGAACATCTTGCAGGTCCTTGG GGTGGTGGCGGTGGAAATCCAACTACGATTACACTT ] [+] EMBL CB096301 [ AGGTCCTTGG GGTGGT GGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGG TTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCCCTCCAATCTCTCTCTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTATATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCTCAAAA GNTTACCTCACTAGTGCCCCGGTATGNTTCTCTCAGNGCTGNATACATTTATGTGNTGGGCTACATTCGCTACATATGTACGTGGNTTATNTNTGATTATATATAAATNAAAGACTACTGGGATGNATTGGGCTTAAATGC] [+] EMBL CB096521 [ AGGTCCTTGGGGTGGTGGT GGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTCGNGAAGGGAATCTNCGGAACATTTACCAACGTCGNGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGACAAGGNGGAGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGNNAGTGTGGTTGG TTTCTTTGGTCGNTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGNCCACATATGATATATGNCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACACAANAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCNCTNCAATCTCTCTCTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTATATACCTATACATATATAGTGGGCATGTGTATGTGGCCTAAACCCAAAAGGTTTACCTCACTAGAGCCCCc ] [+] EMBL CF281230 [ AATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGA AAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAAAGCGGCAGTGTGGTTGGTTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAAT ] [-] EMBL CB967209 [ CTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCACTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGG TTTCTTTGGTCGCTCGGGCACACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCCCTCCGATCTCTCTCTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTATATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAA GTTTACCTCACTAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTACATATGTATGTGGTTTA ATATGATTATATATAAATAAAAGACTACTGTGATGt ] [-] EMBL CF281231 [ TTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCGTAAAGTCTTGTTTGTATAATCCCTCACACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTTTACACCTCCCCTCCAATCTCTCTCTTGGGGATGCATCGCACAAGACCTAAGTCGTAAGGGTGACATTTCTTTAAATAACTGTATATACCTATACATATATAGTGTGCATGTGTATAAAAAAAAGGCCCAAAA GTTTACCTCACTAGTGCCCCGTTATGTTTCTCTCAGTACTGTATACATTTATGTGTTGTGTTACATTCGCTACATATGT ] consensusID : consensus_11325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [GGTCCTTGGGGTGGTGGTGGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCCCTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACCCAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTTTACACCTCCCCTCCAATCTCTCTCTTGGGGATGAATCGCCCAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCCCTCTATATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGTTTACCTCCCTAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTCCAAAAAAAAAAAAAAAAAA] [-] EMBL CA760036 [GGTCCTTGGGGTGGTGGTGGTGGAAATCCAACTACGATTACACTTGGATCTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAATTGTCACCAATGTCACCCCTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCCCGCTGCAGAGCGGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTATCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATATATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCACCCAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTTTACACCTCCCCTCCAATCTCTCTCTTGGGGATGAATCGCCCAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCCCTCTATATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGTTTACCTCCCTAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCTCCAAAAAAAAAAAAAAAAAA] consensusID : consensus_11325#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 140 fasta sequence [CATTCGCTACATATGTATGTGGTTTATATATGATTATATATAAATAAAAGACTACTGTGATGTATTGTGCTTAAATGCACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF307619 [CATTCGCTACATATGTATGTGGTTTATATATGATTATATATAAATAAAAGACTACTGTGATGTATTGTGCTTAAATGCACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11325#0 TAGGACAGAGGCTACAAATTAAAATGACCACACAACTTGTTAAGATCGGGACATGGGGTG 60 consensus_11325#1 ------------------------------------------------------------ consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 GAAATGGAGGAGGTCGTGTAGACCTATCTGTACTCCCAAGGAGCTTGAAAAGCGTGACAA 120 consensus_11325#1 ------------------------------------------------------------ consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 TCCGTAGTGGTGCAGCCATTGATGCTATTGCCTTTACATACATTGGCACAGATGGGAAGG 180 consensus_11325#1 ------------------------------------------------------------ consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 AACATCTTGCAGGTCCTTGGGGTGGTGGTGG---AAATCCAACTACGATTACACTTGGAT 237 consensus_11325#1 -----------GGTCCTTGGGGTGGTGGTGGTGGAAATCCAACTACGATTACACTTGGAT 49 consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 CTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAA 297 consensus_11325#1 CTCAGGAATTCGTGAAGGGAATCTCCGGAACATTTACCAACGTCGTGACAAACCTTCAAA 109 consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 TTGTCACCAATGTCACCACTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCC 357 consensus_11325#1 TTGTCACCAATGTCACCCCTTATAATTTTGGACAAGGTGGTGGAACTGCTTTTAGCCTCC 169 consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 CGCTGCAGAGCGGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTA 417 consensus_11325#1 CGCTGCAGAGCGGCAGTGTGGTTGGTTTCTTTGGTCGCTCGGGCGCACTTGTGGACTCTA 229 consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 TCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATA 477 consensus_11325#1 TCGGAGTTTATGTCCACATATGATATATGTCATCTACATATGAATATATCCAATTGGATA 289 consensus_11325#2 ----------CATTCGCTACATATGTATGTGGTTTATATATGATTATATATAAATAAAAG 50 * * * ** ***** * ** ****** ***** ** * * consensus_11325#0 TATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCA 537 consensus_11325#1 TATGTTGGATCAGTGCTCATGATAAATTCACCCCTAAAGTCTTGTTTGTATAATCCCTCA 349 consensus_11325#2 ACTACTGTGAT-GTATTGTGCTTAAATGCACGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 109 * ** ** * ***** *** *** * ** * consensus_11325#0 CACAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTCTACACCTCCCCTCCAATCTCTCT 597 consensus_11325#1 CCCAAGAGGTTGAAGGAGATTTGTAGGAGATTAATTTTACACCTCCCCTCCAATCTCTCT 409 consensus_11325#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 140 ** * ** * * * * * consensus_11325#0 CTTGGGGATGAATCGCACAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCACTCTA 657 consensus_11325#1 CTTGGGGATGAATCGCCCAAGACCTAAGTCCTAAGGGTGACATTTCTTTCAATCCCTCTA 469 consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 TATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGTTTACCTCAC 717 consensus_11325#1 TATACCTATACATATATAGTGTGCATGTGTATGTGGCCTAGGCCCAAAAGTTTACCTCCC 529 consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 TAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCT 777 consensus_11325#1 TAGTGCCCCGTTATGTTTCTCTCAGTGCTGTATACATTTATGTGTTGTGCTACATTCGCT 589 consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 ACATATGTACGTGGNTTATNTNTGATTATATATAAATNAAAGACTACTGGGATGNATTGG 837 consensus_11325#1 CCAAAAAAAAAAAAAAAAAA---------------------------------------- 609 consensus_11325#2 ------------------------------------------------------------ consensus_11325#0 GCTTAAATGC 847 consensus_11325#1 ---------- consensus_11325#2 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||