These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 774 fasta sequence [GAGCTCCTCGAGCTCTCTCTCTCCTGTTATGTCTAGCCACCACCGGCCACTGCCGATCTCCCTCACCGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGCCTCGACGAGGCGAACTCATTTTCCTAGTTTCCCCTTCCTTTCCCCTTCCGAAACCAACCATCACAGCCACCTCCTCTTGTTGCCGGAGCAAGCTCTTGCCTTCGCCGTTCCGGTCTCCTCCCTAACCCTCTCTACCGGAAACCACCCTCCCTGAGTGCGCGTTGCTCGGGAACGCGTGTTGCCGCCGGCGTCACAGTCTTCTATCCACCGGAGAGCCGGCGCCCCTCCTCTCCCTTCTCTCTGTTTGTTCGTGGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGTCTGACAGAGTCTGTTATATTTTGGATGGCGACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTATCCCGGATTTATTTGCGTTGGAGCAAGAGTCCAATTGATGTTCTTACCGAAGCTGGGAGTTCAATCATATAAGTTAGTTCCATTCTAACTTAATCCTCAAGTATAGACTAGATAAATGGTTTAAGTCTATAGCAAAATAGTAGAGTTGAGTCATTCTATAGCTTCTGTTGTATTAATTAGCCACAAATTTGTAAACACCCATAAATATTTTGTAATAACATATCCTTCGGAGTCATGTTTAAATGTATGCAATGAGGATCCAAATTGTTAAACCTGTATCAAAAAA] [+] EMBL CF319062 [GAGCTCCTCGAGCTCTCTCTCTCCTGTTATGTCTAGCCACCACCGGCCACTGCCGATCTCCCTCACCGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGCCTCGACGAGGCGAACTCATTTTCCTAGTTTCCCCTTCCTTTCCCCTTCCGAAACCAACCATCACAGCCACCTCCTCTTGTTGCCGGAGCAAGCTCTTGCCTTCGCCGTTCCGGTCTCCTCCCTAACCCTCTCTACCGGAAACCACCCTCCCTGAGTGCGCGTTGCTCGGGAACGCGTGTTGCCGCCGGCGTCACAGTCTTCTATCCACCGGAGAGCCGGCGCCCCTCCTCTCCCTTCTCTCTGTTTGTTCGTGGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGTCTGACAGAGTCTGTTATATTTTGGATGGCGACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTATCCCGGATTTATTTGCGTTGGAGCAAGAGTCCAATTGATGTTCTTACCGAAGCTGGGAGTTCAATCATATAAGTTAGTTCCATTCTAACTT ] [+] EMBL CF317985 [ GCTCCTCGAGCTCTCTCTCTCCTGTTATGTCTAGCCACCACCGGCCACTGCCGATCTCCCTCACCGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGCCTCGACGAGGCGAACTCATTTTCCTAGTTTCCCCTTCCTTTCCCCTTCCGAAACCAACCATCACAGCCACCTCCTCTTGTTGCCGGAGCAAGCTCTTGCCTTCGCCGTTCCGGTCTCCTCCCTAACCCTCTCTACCGGAAACCACCCTCCCTGAGTGCGCGTTGCTCGGGAACGCGTGTTGCCGCCGGCGTCACAGTCTTCTATCCACCGGAGAGCCGGCGCCCCTCCTCTCCCTTCTCTCTGTTTGTTCGTGGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGTCTGACAGAGTCTGTTATATTTTGGATGGCAACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTATCTCGGATTTATTTGCGTTAGAGCAAGAGTCCAATTGATGTTCTTACCGAAGCTGGGga ] [+] EMBL CF318279 [ CGAGCTCTCTCCCTCCTGTTATGTCTAGCCACCACCGGCCACTGCCGATCTCCCTCACCGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGCCTCGACGAGGCGAACTCATTTTCCTAGTTTCCCCTTCCTTTCTTTTTCCGAAACCAACCATCACAGCCACCTCCTCTTGTTGCCGGAGCAAGCTCTTGCCTTCGCCGTTCCGGTCTCCTCCCTAACCCTCTCTACCGGAAACCACCCTCCCTGAGTGCGCGTTGCTCGGGAACGCGTGTTGCCGCCGGCGTCACAGTCTTCTATCCACCGGAGAGCCGGCGCCCCTCCTCTCCCTTCTCTCTGTTTGTTCGTGGA ] [+] EMBL CF317463 [ GCTCTCTCTCTCCTGTTATGTCTAGCCACCACCGGCCACTGCCGATCTCCCTCACCGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGCCTCGACGAGGCGAACTCATTTTCCTAGTTTCCCCTTCCTTTCCCCTTCCGAAACCAACCATCACAGCCACCTCCTCTTGTTGCCGGAGCAAGCTCTTGCCTTCGCCGTTCCGGTCTCCTCCCTAACCCTCTCTACCGGAAACCACCCTCCCTGAGTGCGCGTTGCTCGGGAACGCGTGTTGCCGCCGGCGTCACAGTCTTCTATCCACCGGAGAGCCGGCGCCCCTCCTCTCCCTTCTCTCTGTTTGTTCGTGGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAAAAAAA ] [-] EMBL CF319063 [ GCGTTGCTCGGGAACGCGTGTTGCCGCCGGCGTCACAGTCTTCTATCCACCGGAGAGCCGGCGCCCCTCCTCTCCCTTCTCTCTGTTTGTTCGTGGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGTCTGACAGAGTCTGTTATATTTTGGATGGCGACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTATCCCGGATTTATTTGCGTTGGAGCAAGAGTCCAATTGATGTTCTTACCGAAGCTGGGAGTTCAATCATATAAGTTAGTTCCATTCTAACTTAATCCTCAAGTATAGACTAGATAAATGGTTTAAGTCTATAGCAAAATAGTAGAGTTGAGTCATTCTATAGCTTCTGTTGTATTAATTAGCCACAAATTTGTAAACACCCATAAATATTTTGTAATAACATATCCTTCGGAGTCATGTTTAAATGTATGCAATGAGGATCCAAATTGTTAAACCTGTATCAAAAAA] consensusID : consensus_11328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [CCGAGCTCCTCGAGCTCTCTCTCTCCTGTTATGTCTAGCCACCACCGGCCACTGCCGATCTCCCTCACCGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGCCTCGACGAGGCGAACTCATTTTCCTAGTTTCCCCTTCCTTTTCCCTTCCGAAACCAACCATCACAGCCACCTCCTCTTGTTGCCGGAGCAAGCTCTTGCCTTCGCCGTTCCGGTCTCCTCCCTAACCCTCTCTACCGGAAACCACCCTCCCTGAGTGCGCGTTGCTCGGGAACGCGTGTTGCCGCCGGCGTCACAGTCTTCTATCCACCGGAGAGCCGGCGCCCCTCCTCTCCCTTCTCTCTGTTTGTTCGTGGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGTCTGACAGAGTCTGTTATATTTTGGATGGCAACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTATCTCGGATTTATTTGCGTTGGAGTAAGGTACTGCGCTTACCTGGTGGTGTTCCAACCGGATCTCCTCCCCGACTACAGTGAGAATGCGGA] [+] EMBL CF321779 [CCGAGCTCCTCGAGCTCTCTCTCTCCTGTTATGTCTAGCCACCACCGGCCACTGCCGATCTCCCTCACCGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGCCTCGACGAGGCGAACTCATTTTCCTAGTTTCCCCTTCCTTTTCCCTTCCGAAACCAACCATCACAGCCACCTCCTCTTGTTGCCGGAGCAAGCTCTTGCCTTCGCCGTTCCGGTCTCCTCCCTAACCCTCTCTACCGGAAACCACCCTCCCTGAGTGCGCGTTGCTCGGGAACGCGTGTTGCCGCCGGCGTCACAGTCTTCTATCCACCGGAGAGCCGGCGCCCCTCCTCTCCCTTCTCTCTGTTTGTTCGTGGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGTCTGACAGAGTCTGTTATATTTTGGATGGCAACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTATCTCGGATTTATTTGCGTTGGAGTAAGGTACTGCGCTTACCTGGTGGTGTTCCAACCGGATCTCCTCCCCGACTACAGTGAGAATGCGGA] consensusID : consensus_11328#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [AGGACACTGACATGGACTGAGGAGTAGAAAACAACCGAGCCGTGAGCTCAGTCTCTCTCTCTCTCTCTTCTCATGTCAAACCACCACCGGCCATCGTCGATCTCCCTCACTGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGCCTCGACGAGGCGAACTCATTTTCCTAGTTTACCCTTCCTTTTCCCTTCCGAAACCAACCATCATAGCCACCTCCTTTGTTGCCGGAGCAAGCTCTTGCCGTCGCCGTTCCGGTCTCCTCCCTAACCTTCTCTATCGGCAACCACCCTCCCTAAGTGCGCGTTGCTCGGGAACGCGTTTTGCCGCCAGAGTCACAGTCTTCCATCCACCGGAGAGCCGGCGCCCCTTCTCTCCCTCCTCTCAACTCACTCGGCAACAGAAAAGAAGAAGAGAACGGGAGGAAGAAGAAGGAAGAAGAAAGAGAGAAGAAAAAAAGAAAAGGGAACTGACAGAGTCCATTTGGAGTTCTTATCGAAGCCGGGAGTTCAATCACATAAGTTAGTTCACTTTAAACCTAGTCTTGAA] [+] EMBL CF321662 [AGGACACTGACATGGACTGAGGAGTAGAAAACAACCGAGCCGTGAGCTCAGTCTCTCTCTCTCTCTCTTCTCATGTCAAACCACCACCGGCCATCGTCGATCTCCCTCACTGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGCCTCGACGAGGCGAACTCATTTTCCTAGTTTACCCTTCCTTTTCCCTTCCGAAACCAACCATCATAGCCACCTCCTTTGTTGCCGGAGCAAGCTCTTGCCGTCGCCGTTCCGGTCTCCTCCCTAACCTTCTCTATCGGCAACCACCCTCCCTAAGTGCGCGTTGCTCGGGAACGCGTTTTGCCGCCAGAGTCACAGTCTTCCATCCACCGGAGAGCCGGCGCCCCTTCTCTCCCTCCTCTCAACTCACTCGGCAACAGAAAAGAAGAAGAGAACGGGAGGAAGAAGAAGGAAGAAGAAAGAGAGAAGAAAAAAAGAAAAGGGAACTGACAGAGTCCATTTGGAGTTCTTATCGAAGCCGGGAGTTCAATCACATAAGTTAGTTCACTTTAAACCTAGTCTTGAA] consensusID : consensus_11328#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [GGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGTCTGACAGAGTCTGTTATATTTTGGATGGCAACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTATCTCGGATTTATTTGCGTTAGAGCAAGAGTCCAATTGATGTTCTTACCGAAGCTGGGAGTTCAATCATATAAGTTAGTTCCATTCTAACTTAATCCTCAAGTATAGACTAGATAAATGGTTTAAGTCTATAGCAAAATAGTAGAGTTGAGTCATTCTATAGCTTCTGTTGTATTAATTAGCCACAAATTTGTAAACACCCATAAATATTTTGTAATAACATATCCTTCGGAGTCAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF337446 [GGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGTCTGACAGAGTCTGTTATATTTTGGATGGCAACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTATCTCGGATTTATTTGCGTTAGAGCAAGAGTCCAATTGATGTTCTTACCGAAGCTGGGAGTTCAATCATATAAGTTAGTTCCATTCTAACTTAATCCTCAAGTATAGACTAGATAAATGGTTTAAGTCTATAGCAAAATAGTAGAGTTGAGTCATTCTATAGCTTCTGTTGTATTAATTAGCCACAAATTTGTAAACACCCATAAATATTTTGTAATAACATATCCTTCGGAGTCAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11328#0 GAGCTCCTCGAGCTCTCTCTCTCCTGTTATGTCTAGCCACCACCGGCCACTGCCGATCTC 60 consensus_11328#3 ------------------------------------------------------------ consensus_11328#1 ------------------------------------------------------------ consensus_11328#2 ------------------------------------------------------------ consensus_11328#0 CCTCACCGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGCCTCGACGAGGCGAA 120 consensus_11328#3 ------------------------------------------------------------ consensus_11328#1 ------------------------------------------------------------ consensus_11328#2 ------------------------------------------------------------ consensus_11328#0 CTCATTTTCCTAGTTTCCCCTTCCTTTCCCCTTCCGAAACCAACCATCACAGCCACCTCC 180 consensus_11328#3 ------------------------------------------------------------ consensus_11328#1 ------------------------------------------------------------ consensus_11328#2 ------------------------------------------------------------ consensus_11328#0 TCTTGTTGCCGGAGCAAGCTCTTGCCTTCGCCGTTCCGGTCTCCTCCCTAACCCTCTCTA 240 consensus_11328#3 ------------------------------------------------------------ consensus_11328#1 ------------------------------------------------------------ consensus_11328#2 ------------------------------------------------------------ consensus_11328#0 CCGGAAACCACCCTCCCTGAGTGCGCGTTGCTCGGGAACGCGTGTTGCCGCCGGCGTCAC 300 consensus_11328#3 ------------------------------------------------------------ consensus_11328#1 ------------------------------------------------------------ consensus_11328#2 ------------------------------AGGACACTGACATGGACTGAGGAGTAGAAA 30 consensus_11328#0 AGTCTTCTATCCACCGGAGAGCCGGCGCCCCTCCTCTCCCTTCTCTCTGTTTGTTCGTGG 360 consensus_11328#3 ----------------------------------------------------------GG 2 consensus_11328#1 -----------CCGAGCTCC-TCGAGCTCTCTCTCTCCTGTTATGTCTAGCCACCACCGG 48 consensus_11328#2 ACAACCGAGCCGTGAGCTCAGTCTCTCTCTCTCTCTCTTCTCATGTCAAACCACCACCGG 90 ** consensus_11328#0 AGAAAGA-GAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGT 419 consensus_11328#3 AGAAAGA-GAGAAGAAGCAGGAAAGAAGAAGAAGAAGAAAAAGAGAGAAAAAGAAAAAGT 61 consensus_11328#1 CCACTGCCGATCTCCCTCACCGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGC 108 consensus_11328#2 CCATCGTCGATCTCCCTCACTGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCGGGTTTGC 150 * * ** ** ** * * * * * * * consensus_11328#0 CTGACAGAGTCTGTTATATTTTGGATGGCGACCTGTGGTATTTCAAGGATCGGATAATCA 479 consensus_11328#3 CTGACAGAGTCTGTTATATTTTGGATGGCAACCTGTGGTATTTCAAGGATCGGATAATCA 121 consensus_11328#1 CTCGACGAGGCGAACTCATTTTCCTAGTTTCCCCTTCCTTTTCCCTTCCGAAACCAACCA 168 consensus_11328#2 CTCGACGAGGCGAACTCATTTTCCTAGTTTACCCTTCCTTTTCCCTTCCGAAACCAACCA 210 ** *** * ***** * ** * * ** * ** ** consensus_11328#0 GGTTGCCTATCCCGGATTTATTTGCGTTGGAGCAAGAGTCCA--ATTGATGTTCTTACCG 537 consensus_11328#3 GGTTGCCTATCTCGGATTTATTTGCGTTAGAGCAAGAGTCCA--ATTGATGTTCTTACCG 179 consensus_11328#1 TCACAGCCACCTC----CTCTTGTTGCCGGAGCAAGCTCTTGCCTTCGCCGTTCCGGTCT 224 consensus_11328#2 TCATAGCCACCTC----CT-TTGTTGCCGGAGCAAGCTCTTGCCGTCGCCGTTCCGGTCT 265 * * * * * ** * ******* * * **** * consensus_11328#0 AAGCTGGGAGTTCAATCAT--ATAAGTTAGTTCCATTCTAACTTAATCCTCAAGTATAGA 595 consensus_11328#3 AAGCTGGGAGTTCAATCAT--ATAAGTTAGTTCCATTCTAACTTAATCCTCAAGTATAGA 237 consensus_11328#1 CCTCCCTAACCCTCTCTACCGGAAACCACCCTCCCTGAGTGCGCGTTGCTCGGGAACGCG 284 consensus_11328#2 CCTCCCTAACCTTCTCTATCGGCAACCACCCTCCCTAAGTGCGCGTTGCTCGGGAACGCG 325 * * * ** *** * * * *** * * consensus_11328#0 CTAGATAA--ATGGTTTAAGTCTATAGCAAAATAGTAGAGTTGAG--TCATTCTATAGCT 651 consensus_11328#3 CTAGATAA--ATGGTTTAAGTCTATAGCAAAATAGTAGAGTTGAG--TCATTCTATAGCT 293 consensus_11328#1 TGTTGCCGCCGGCGTCACAGTCTTCTATCCACCGG-AGAGCCGGCGCCCCTCCTCTCCCT 343 consensus_11328#2 TTTTGCCGCCAGAGTCACAGTCTTCCATCCACCGG-AGAGCCGGCGCCCCTTCTCTCCCT 384 ** ***** * * **** * * * ** * ** consensus_11328#0 TCTGTTGTATTAATTAGCCACAAATTTGTAAACACCCATAAATATTTTGTAATAACATAT 711 consensus_11328#3 TCTGTTGTATTAATTAGCCACAAATTTGTAAACACCCATAAATATTTTGTAATAACATAT 353 consensus_11328#1 TCTCTCTGTTTGTTCGTGGA--GAAAGAGAGAAGAAGCAGGAAAG--AAGAAGAAGAAGA 399 consensus_11328#2 CCTCTCAACTCACTCGGCAACAGAAAAGAAGAAGAGAACGGGAGG--AAGAAGAAGGAAG 442 ** * * * * * * * ** ** consensus_11328#0 CCTTCGGAGTCATGTTTAAATGTATGCAATGAGGATCCAAATTGTTAAACCTGTATCAAA 771 consensus_11328#3 CCTTCGGAGTCAAAAAAAAAAAAAAAAAAAA----------------------------- 384 consensus_11328#1 AAAAGAGAGAAAAAGAAAAAGTCTGACAGAGTCTGTTATATTTTGGATGGCAACCT-GTG 458 consensus_11328#2 AAGAAAGAGAGAAGAAAAAAAGAAAAGGGAA-CTGACAGAGTCCATTTGGAGTTCTTATC 501 *** * *** consensus_11328#0 AAA--------------------------------------------------------- 774 consensus_11328#3 ------------------------------------------------------------ consensus_11328#1 GTATTTCAAGGATCGGATAATCAGGTT-GCCTATCTCGGATTTATTTGCGTTGGAGTAAG 517 consensus_11328#2 GAAGCCGGGAGTTCAATCACATAAGTTAGTTCACTTTAAACCTAGTC---TTGAA----- 553 consensus_11328#0 ------------------------------------------------------------ consensus_11328#3 ------------------------------------------------------------ consensus_11328#1 GTACTGCGCTTACCTGGTGGTGTTCCAACCGGATCTCCTCCCCGACTACAGTGAGAATGC 577 consensus_11328#2 ------------------------------------------------------------ consensus_11328#0 --- consensus_11328#3 --- consensus_11328#1 GGA 580 consensus_11328#2 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||