These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11331#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2150 fasta sequence [TGCTTTTTCTTCTTCTTCTTCTTCTTCTCCATCTCTCCTCTCCTGTTTCTTTCTTCTCTCCTTGTTGTTGCAGCTGTCCTCTCTCTCTCCTCAAAGAGAAAATTAAGCCACTGGCCCCTTTAAGATTGACCTGAGATTTCCAGTACACAAGTTGTGTGCATGCAAAGAGAGGCCAAAGCTAAGCTAGCAAAACACACATTCCTTTCCCACAGCTAGCTTAGCTTGAAGCAAGCAAGAACTCATCATCTTTGTTTCTACATATCCTTTAATACTCTCCTCTCTGTCACTAGCAGTGATGAATAGAGGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCCATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTC-TCCATCGTTGATCTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGGCGCCGCCGC-TTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCATGCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAGCGCCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGCTGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCA-TTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATAATGGCAACACTGGAGCACAGCAGCCTGCAGCCCAACCTGAGCAGCAGGGAGCAAACGACGATGGAAAGAAGGACCTGAGGAGCCGGGGGCTGTGCCTCGTTCCAGTGTCGTGCACGTCGCACTTTGGAGGGGACAATGCCGCTGACTACTGGGCCCCGGCGCCGCTCGGCGGGATCCTACGGTAGAATGCATCGTT-GAGATTCGTGCATACAAAGC-GTGGCGGCACAGCGAGTACTATATGTTGATGCATGAGGAGGCTACAGACGAAATAGGTCTCTT-AAGAATGGAGAACAGAGTGTGCATTGGGTGCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTACCTGTAAGGTTGATTGCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATTAATTAAGCTTCTGGATCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTCAGTTGCTCGGCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTGTCTTCGATGTTGCTGAATTATTTGTGTGCATCTATATATGGATTTTCTGTATGTCAATCGACAGG] [+] EMBL AK100786 [TGCTTTTTCTTCTTCTTCTTCTTCTTCTCCATCTCTCCTCTCCTGTTTCTTTCTTCTCTCCTTGTTGTTGCAGCTGTCCTCTCTCTCTCCTCAAAGAGAAAATTAAGCCACTGGCCCCTTTAAGATTGACCTGAGATTTCCAGTACACAAGTTGTGTGCATGCAAAGAGAGGCCAAAGCTAAGCTAGCAAAACACACATTCCTTTCCCACAGCTAGCTTAGCTTGAAGCAAGCAAGAACTCATCATCTTTGTTTCTACATATCCTTTAATACTCTCCTCTCTGTCACTAGCAGTGATGAATAGAGGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCCATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTC TCCATCGTTGATCTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGGCGCCGCCGC TTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCATGCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAGCGCCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGCTGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCA TTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATAATGGCAACACTGGAGCACAGCAGCCTGCAGCCCAACCTGAGCAGCAGGGAGCAAACGACGATGGAAAGAAGGACCTGAGGAGCCGGGGGCTGTGCCTCGTTCCAGTGTCGTGCACGTCGCACTTTGGAGGGGACAATGCCGCTGACTACTGGGCCCCGGCGCCGCTCGGCGGGATCCTACGGTAGAATGCATCGTT GAGATTCGTGCATACAAAGC GTGGCGGCACAGCGAGTACTATATGTTGATGCATGAGGAGGCTACAGACGAAATAGGTCTCTT AAGAATGGAGAACAGAGTGTGCATTGGGTGCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTACCTGTAAGGTTGATTGCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATTAATTAAGCTTCTGGGTCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTCAGTTGCTCGGCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTGTCTTC ] [+] EMBL OSR3238A [ AGGCCAAAGCTAAGCTAGCAAAACACACATTCCTTTCCCACAGCTAGCTTAGCTTGAAGCAAGCAAGAACTCATCATCTTTGTTTCTACATATCCTTTAATACTCTCCTCTCTGTCACTAGCAGTGATGAATAGAGGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCGGACAGTTTGATGGGCAGCTTGAAGCCATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTTCCATCGTTGATCTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCANCG CGGCGGCG CGCTTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGG CATGAGAGCAG ATGCCGGAGT ] [+] EMBL AK121917 [ CTGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCATTTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATAATGGCAACACTGGAGCACAGCAGCCTGCAGCCCAACCTGAGCAGCAGGGAGCAAACGACGATGGAAAGAAGGACCTGAGGAGCCGGGGGCTGTGCCTCGTTCCAGTGTCGTGCACGTCGCACTTTGGAGGGGACAATGCCGCTGACTACTGGGCCCCGGCGCCGCTCGGCGGGATCCTACGGTAGAATGCATCGTT GAGATTCGTGCATACAAAGC GTGGCGGCACAGCGAGTACTATATGTTGATGCATGAGGAGGCTACAGACGAAATAGGTCTCTT AAGAATGGAGAACAGAGTGTGCATTGGGTGCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTACCTGTAAGGTTGATTGCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATTAATTAAGCTTCTGGATCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATAGGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTCAGTTGCTCGGCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTGTCTTCGATGTTGCTGAATTATTTGTGTGCATCTATATATGGATTTTCTGTATGTCAATCGACAGG] [+] EMBL AU082906 [ TCGTTNAAGATTCGTGCATNCAAAGCGGTGCCGGCACAGCGAGTACTATATGTTGATGCATAAGGAGGTTACAGACGAAATAGGTCTCTTAAAGAATGGAGANCAGAGTGTGCATTGGGTNCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTACCTGTAAGGTTGATTGCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATTAATTAAGCTTCTGGATCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTCAGTTGCTCGGCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTGTCTTCGATGTTGCTGAATTATTTGTGTGCATCTAaaaaa ] consensusID : consensus_11331#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1611 fasta sequence [GGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCCATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTCCATCGTTGATCTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGGCGCCGCCGCTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCATGCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAGCGTCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGCTGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCATTTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATCAAGGTGACACTCAGCTTGGCTGCAAAACGATTTGCAAATTCGTTGTCCCTCTGTAAGGAAACATTTTTCTCGCCAGAGATGGATGATGACCTGGTCCAAAGGTACCAAGGGCTAATGAAGGACAGCTCAAAGTTACCACTATTTGACCTAAGGAAGCTCAATGCATCATTGCCTGTAGCTTCTGTGCCAAATAATACAGTAAACATCCTCGTTGTGGGCGCCAGCAGTGACTTCATTGTTGATGCTGAAGGGCTTTCAGAAACTGCAAGATTTTATAATGCGCAACCAGTCTGCATCGAAGGGATAGCCCATGATATGATGCTTGATTGCTCGTGGGATAAAGGAGCTGGGATTATCTTGTCATGGCTGGAGAAACTTACACCAAGATAAATCTTTTGTATTTTTTAAGACCTGTTTCTACATTTTGTAGCCCTTGTTCATTTTCAAATGTAGAATCTTTGGTTGATAGGCAGTTTAGTTAGTGCTCTTCAGTTTTTTTTGTATTATTATTTGATTGAATAAATTTAAGCATGCTTAGTGAACAATACTGCATGAAT] [+] EMBL AK107340 [GGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGGCACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCCATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTCCATCGTTGATCTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGGCGCCGCCGCTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCATGCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAGCGTCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGCTGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCGCCGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATCCCCATTTGGCAAGACTGACACAGCGTCTGTACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTACCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAGGAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATCAAGGTGACACTCAGCTTGGCTGCAAAACGATTTGCAAATTCGTTGTCCCTCTGTAAGGAAACATTTTTCTCGCCAGAGATGGATGATGACCTGGTCCAAAGGTACCAAGGGCTAATGAAGGACAGCTCAAAGTTACCACTATTTGACCTAAGGAAGCTCAATGCATCATTGCCTGTAGCTTCTGTGCCAAATAATACAGTAAACATCCTCGTTGTGGGCGCCAGCAGTGACTTCATTGTTGATGCTGAAGGGCTTTCAGAAACTGCAAGATTTTATAATGCGCAACCAGTCTGCATCGAAGGGATAGCCCATGATATGATGCTTGATTGCTCGTGGGATAAAGGAGCTGGGATTATCTTGTCATGGCTGGAGAAACTTACACCAAGATAAATCTTTTGTATTTTTTAAGACCTGTTTCTACATTTTGTAGCCCTTGTTCATTTTCAAATGTAGAATCTTTGGTTGATAGGCAGTTTAGTTAGTGCTCTTCAGTTTTTTTTGTATTATTATTTGATTGAATAAATTTAAGCATGCTTAGTGAACAATACTGCATGAAT] [+] EMBL C28657 [ GTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGCAGCCACTGNT CTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATCAGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGGTGCTAGCAACAAGTCTCAGCTGAGCCAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATGCTCGACTTCTCCAACACCGCGGCGCCG CGGAGCTCCGGAGCCACCACCACAACTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAGGGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGATAGAATAACTGCACTTCATCAGATTGTATn ] consensusID : consensus_11331#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [GTGTTTGTGAATAGTGTGGGCTTCTCTTNGAAGTGGTCTNATCATTGTGGTGAACAGCTGATGGAGGGTTGACGCTGAGGCTGANTAAGGTGGATGAGAATGTGAAAGTGTGANACGCTTGTTGTCTGGGGATTTCTNGGCAAGATGTGTATATGATATGGCTGTGCCATGTGTGCCACAGATANGGAGGACGCCTGCTGGCAAATAGTNTGGGATGGCCCCCCCTCGTTGGATGATGGTGATGATGGTGAAATAGTCTGAGGCACAGGTTAGGTGAACACCTTTGCTGCATGACTACCGTGCTGTTGATGTTGATCATCAGAGAGCAGGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTGCAGTTGCTGCGGCTGGTGTATGTAGGAAATTAAAGTTGGATGATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCCAATATTATTTGTCTTCGATGTTGCTGAAAAAAAAAA] [+] EMBL BQ906894 [GTGTTTGTGAATAGTGTGGGCTTCTCTTNGAAGTGGTCTNATCATTGTGGTGAACAGCTGATGGAGGGTTGACGCTGAGGCTGANTAAGGTGGATGAGAATGTGAAAGTGTGANACGCTTGTTGTCTGGGGATTTCTNGGCAAGATGTGTATATGATATGGCTGTGCCATGTGTGCCACAGATANGGAGGACGCCTGCTGGCAAATAGTNTGGGATGGCCCCCCCTCGTTGGATGATGGTGATGATGGTGAAATAGTCTGAGGCACAGGTTAGGTGAACACCTTTGCTGCATGACTACCGTGCTGTTGATGTTGATCATCAGAGAGCAGGAAAAGCTTGCGCGGTAGTGTCAATATTCCGTGCAGTTGCTGCGGCTGGTGTATGTAGGAAATTAAAGTTGGATGATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCCAATATTATTTGTCTTCGATGTTGCTGAAAAAAAAAA] consensusID : consensus_11331#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [AATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAANTTGCGCGGTAGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU095503 [AATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCATACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAANTTGCGCGGTAGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 TGCTTTTTCTTCTTCTTCTTCTTCTTCTCCATCTCTCCTCTCCTGTTTCTTTCTTCTCTC 60 consensus_11331#1 ------------------------------------------------------------ consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CTTGTTGTTGCAGCTGTCCTCTCTCTCTCCTCAAAGAGAAAATTAAGCCACTGGCCCCTT 120 consensus_11331#1 ------------------------------------------------------------ consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 TAAGATTGACCTGAGATTTCCAGTACACAAGTTGTGTGCATGCAAAGAGAGGCCAAAGCT 180 consensus_11331#1 ------------------------------------------------------------ consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 AAGCTAGCAAAACACACATTCCTTTCCCACAGCTAGCTTAGCTTGAAGCAAGCAAGAACT 240 consensus_11331#1 ------------------------------------------------------------ consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CATCATCTTTGTTTCTACATATCCTTTAATACTCTCCTCTCTGTCACTAGCAGTGATGAA 300 consensus_11331#1 ------------------------------------------------------------ consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 TAGAGGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGG 360 consensus_11331#1 ----GGAGAATTCCAGAGCTCCCTGGTGCAGCAGATGATCTGGAGCGGCAGTAGTACAGG 56 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCC 420 consensus_11331#1 CACGGCTACCGGCGTCGGCAGCGGCGGCGGCGCCGGCAGTTTGATGGGCAGCTTGAAGCC 116 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 ATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTCCATCGTTGAT 480 consensus_11331#1 ATGCCATGAGGATCAAGAGGCCTCTCCTAACATGCCCTCCTTGTCTTCTCCATCGTTGAT 176 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGG 540 consensus_11331#1 CTTCTCGCAGCAGTTTCAGCACAGCTCTCCAGGTCTAGTTCCGATGAACGGCACCGCCGG 236 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CGCCGCCGCTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCAT 600 consensus_11331#1 CGCCGCCGCTTCTCTTCCGAGCTTGCACGACGGCGGCGGCGGCGGCCATGAGAGCAGCAT 296 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 GCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAG 660 consensus_11331#1 GCCGGAGTCATGGAGCCAACTGCTTCTTGGGGGATTAGCTGGAGATCAGGAGAGGTACAG 356 consensus_11331#2 ------------GTGTTTGTGAATAGTGTGGGCTTCTCTTNGAAGTGGTCTNATCATTGT 48 consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CGCCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGC 720 consensus_11331#1 CGTCACTGCGGCTCTCCTGTCAAAGGGATTAGAGAATTGGGGAGATCACGCTGCTGCAGC 416 consensus_11331#2 GGTGAACAGCTGATGGAGGGTTGACGCTGAGGCTGANTAAGG-----TGGATGAGAATGT 103 consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 TGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGC 780 consensus_11331#1 TGCAGCCAGTGCATGCATGGTTGGTGGCATGAAGGAGGAGGGCTCCATGGCTCAAGCTGC 476 consensus_11331#2 GAAAGTGTGANACGCTTGTTGTCTGGGGATTTCTNGGCAA--GATGTGTATATGAT-ATG 160 consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 AGCCAC-TGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATC 839 consensus_11331#1 AGCCAC-TGCTGCTGCTGCTGCTTACAGCTTCTATGGGAGCCACCTTGCTGGTGATCATC 535 consensus_11331#2 GCTGTGCCATGTGTGCCACAGATANGGAGGACGCCTGCTGGCAAATAGTNTGGGATGGCC 220 consensus_11331#3 -----------------------AATTAAGAAGCTT---------CAGTTCAAGAAGGAG 28 consensus_11331#0 AGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGG-TGCTAGCAACAAGTCTCAGCTGAGC 898 consensus_11331#1 AGCATGAGATCCAAGCAGCAGCAGCAGGAGGAGG-TGCTAGCAACAAGTCTCAGCTGAGC 594 * * * *** * * consensus_11331#2 CC--CCCTCGTTGGATGATGGTGATGATGGTGAAATAGTCTGAGGCACAG--GTTAGGTG 276 consensus_11331#3 AC--CTTGCAAAAGTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTG 86 consensus_11331#0 CAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATG 958 consensus_11331#1 CAGATGCTCATGGCTTCCTCTCCTAGGTCATGCATCACCACCAGCCTCGGCAGCAACATG 654 * * * * * * * ** consensus_11331#2 AACACCTTTGCTGCATGACTACCGTGCTGTTGATGTTGATCATCAGAGAGCAGGAAAAGC 336 consensus_11331#3 AACAC-TTTGCT-CAT-ACTACCGTGCT-TTGATTT--ATCATCAGA-AGCAGAAAAN-- 137 consensus_11331#0 CTCGACTT--CTCCAACACCGCGGCGCCGCCGGAGC---TCCGGAGCCACCACCACAA-- 1011 consensus_11331#1 CTCGACTT--CTCCAACACCGCGGCGCCGCCGGAGC---TCCGGAGCCACCACCACAA-- 707 * ** ** ** ** * * ** * ** ** * ** * * consensus_11331#2 TTGCGCGGTAGTGTCAATATTCCGTGCAGTTGCTGCGGCTGGTGTATGTAGGAAATTAAA 396 consensus_11331#3 TTGCGCGGTAGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 197 consensus_11331#0 CTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAG 1071 consensus_11331#1 CTCCGATAATTCATCAGAGTGTAACAGCACAGCGACTGGTTCGGCCCTCAAGAAGGCTAG 767 * ** *** * ** * consensus_11331#2 GTTGGATGATCCCATATCACATATATGTATATTGACAGTTAATTTGTATCAGTTATTTAC 456 consensus_11331#3 AA---------------------------------------------------------- 199 consensus_11331#0 GGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGA 1131 consensus_11331#1 GGTTCAGGCCTCCTCTTCAGCACAATCTACTCTAAAGGTGAGGAAGGAGAGGCTAGGGGA 827 consensus_11331#2 TGAGTTAAGTCAGCCAATATTATTTGTCTTCGATGTTGCTGAAAAAAAAAA--------- 507 consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 TAGAATAACTGCACTTCATCAGATTGTATCCCCATT-GGCAAGACTGACACAGCGTCTGT 1190 consensus_11331#1 TAGAATAACTGCACTTCATCAGATTGTATCCCCATTTGGCAAGACTGACACAGCGTCTGT 887 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 ACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTA 1250 consensus_11331#1 ACTGCAAGAGACCATTGGCTATATCAGATTCCTCCTGAGTCAAATTGAGGCTCTGAGCTA 947 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAG 1310 consensus_11331#1 CCCTTACATGGGCGACGCCAACGGGACCGGTCCTATGCAAAATGGACCAGTTGGAGAAAG 1007 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 GAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATAATGGCAACACTGG 1370 consensus_11331#1 GAACCCTGGCCTCTTCCCGGAATACCCTGGCCAGTTGCTAAACCATCAAGGTGACACTC- 1066 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 AGCACAGCAGCCTGCAGCCCAACCTGAGCAGCAGGGAGCAAACGACGATGGAAAGAAGGA 1430 consensus_11331#1 AGCTTGGC----TGCAAAACGATTTGCAAATTCGTTGTCCCTCTGTAA-GGAAACATTTT 1121 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CCTGAGGAGCCGGGGGCTGTGCCTCGTTCCAGTGTCGTGCACGTCGCACTTTGGAGGGGA 1490 consensus_11331#1 TCTCGCCAGAGATGGATGATGACCTGGTCCAAAGGTACCAAGGGCTAATGAAGGACAGCT 1181 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CAATGCCGCTGACTACTGGGCCCCGGCGCCGCTCGGCGGGATCCTACG-GTAGAATGCAT 1549 consensus_11331#1 CAAAGTTACC-ACTATTTGACCTAAG-GAAGCTCAATGCATCATTGCCTGTAGCTTCTGT 1239 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CGTTGAGATTCGTGCATACAAAG-CGTGGCGGCA--CAGCGAGTACTATAT-GTTGATGC 1605 consensus_11331#1 GCCAAATAATACAGTAAACATCCTCGTTGTGGGCGCCAGCAGTGACTTCATTGTTGATGC 1299 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 ATGAGGAGGCTACAGACGAAATAGGTCTCTTAAGAATGGAGAACAGAGTGTGCATTGGGT 1665 consensus_11331#1 -TGAAGGGCTTTCAGAAACTGCAAGATTTT--ATAATGCGCAACC-AGTCTGCATCGA-- 1353 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 GCAGGAGTAACGTCGTCATAACATCATGAGCAGTCATTCTCTGGTAAGAAAAAAAATTAC 1725 consensus_11331#1 --AGGGATAGC----CCATGATATGATGCTTGATTGCTC----GTGGGATAAAGGAGC-- 1401 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CTGTAAGGTTGATTGCTCTTGATGCTATGGGAGTGAGAGGTAGCTAGCTATAGTATAATT 1785 consensus_11331#1 ---TGGGATTATCTTGTCATGGC-TGGAGAAACTTACACCAAGATAAATCTTTTGTATTT 1457 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 AATTAAGCTTCTGGATCTGCAAATTAAGAAGCTTCAGTTCAAGAAGGAGACCTTGCAAAA 1845 consensus_11331#1 TTTAAGACCT----GTTTCTACATTTTGTAGCCCTTGTTCA----------TTTTCAAAT 1503 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 GTTGATGCCCCCTTTGATATGTATATGTAAAATCTAGCAAGTCAGTGAACACTTTGCTCA 1905 consensus_11331#1 GTAGAATCTTTGGTTGATA----------------GGCAGTTTAGTTAGTGCTCTTCAGT 1547 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 TACTACCGTGCTTTGATTTATCATCAGAAGCAGAAAAGCTTGCGCGGTAGTGTCAATATT 1965 consensus_11331#1 TTTTTTTGTATTATTATTTG--ATTGAATAAATTTAAGCATGCTTAGTGAA--CAATACT 1603 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 CCGTCAGTTGCTCGGCTGGTGTATGTAGGAAATTAAAGTTGATATCCCATATCACATATA 2025 consensus_11331#1 GCATGAAT---------------------------------------------------- 1611 consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 TGTATATTGACAGTTAATTTGTATCAGTTATTTACTGAGTTAAGTCAGCAATATTATTTG 2085 consensus_11331#1 ------------------------------------------------------------ consensus_11331#2 ------------------------------------------------------------ consensus_11331#3 ------------------------------------------------------------ consensus_11331#0 TCTTCGATGTTGCTGAATTATTTGTGTGCATCTATATATGGATTTTCTGTATGTCAATCG 2145 consensus_11331#1 ------------------------------------------------------------ consensus_11331#2 ----- consensus_11331#3 ----- consensus_11331#0 ACAGG 2150 consensus_11331#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||