|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1127 fasta sequence
[TTTTTTTTTTTTTTTTTAACTACAACCATTGGC-TGTTGTTTTATTTCATTCTTTGTACACCGTTACAACATAGCAGACTTAGCAGCACTCACATATATATACCAACAAACACATATACATCATCCAAATGTTCCAATCGAGTACCTTCTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGTGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCATGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAGATGAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAGATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCATCTTCGTCCTTGGCATATAGTTCGACATAGCGGCGGAATGTAGGATCTTCAACAAGAGCCTTGTCAGTAGGCAACTTCAGAAGCCCTTCTGAATTCTCTTTCAGAAGCTCAATGAAATAGGAGTTGTCAAATTTCAGTGGATCCTTTGTCCAGGCACCATCAAATCCTGATCTTTCGGGACGAGCTTTCCCGAGAGTATGGCCGCCTGAGAGTGCTACTATGTCCTTGGCTGATAAG-CCATCCTGTAGAAGACTTCCCTCAAATGCGCAGCACCTTTCTTAGCATCTGGCAAACGGCCTTCCTCTGGGGAATCTGAAGAATCCCTCCTGCCAGGAACATAATCTATAGTTGGCCCACCGGTGACTTCAACGGCAACAAC-TCCGGCAAGCTGATACAGGTCAGCATAGGTAATCTTGGGATGCTTCTGTTTCATCGGTTCTAGCAGATCAATAGCAATCTTGATGCCC-CATTCGCGGCGTGGCTGTACTCCTGCGGGAACCTGATGGAGCCGTTGGGCCCTCCCGTCTTCGTCGCCTTGTCGTACGTGCCGGCGTCGTGCCACGCCAGGCGGAGCATGATGGGAGCGCAGCTCTTGCTGGCGATGAGGGCGCGCAGGTCGCGGCGCGCCCTCTCGACCTCCGCCATGTACTCCGCGTCCACTACC-GCGCCGCCGACATCGCCGCCGCTGTTGCTGACGATCCGAGGAGAGGTGATAGGTGGA]
[-] EMBL AU182809 [TTTTTTTTTTTTTTTTTAACTACAACCATTGGC TGTTGTTTTATTTCATTCTTTGTACACCGTTACAACATAGCAGACTTAGCAGCACTCACATATATATACCAACAAACACATATACATCATCCAAATGTTCCAATCGAGTACCTTNTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGNGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCATGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAGATGAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAGATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCATCTTCGTCCTTGGCATATAGTTCGA ]
[+] EMBL CA762784 [ TTTTTTTTTTTTTTTTAACTACAACCATTGGCGTGTTGTTTTATTTCATTCTTTGTACACCGTTACAACATAGCAAACTTAGTAGCACTAACATATATATACCAACAAACACATATACATCATCCAAATGTTCCAATCGAGTACCTTCTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGTGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCAGGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAAATAAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAAATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCATCTTCGTCCTTGGCATATAGTTCGACATAGCGGCGGAATGTAGGATCTTCAACAAGAGCCTTGTCAGTAGGCAACTTCAGAAGCCCTTCTGAATTCTCTTTCAGAAGCTCAATGAAATAGGAGTTGTCAAATTTCAGTGGATCCTTTGTCCAGGCACCATCAAATCCTGATCTTTCGGGACGAGCTTTCCCGAGAGTATGTCCGCCTGAGAGTGCTACTATGTCCTTGGCTGATAAG CCATCCTGTAGAAGACTTCCCTCAAATGCGCAGCACCTTTCTTAGCATCT ]
[-] EMBL AU182789 [ TTTTTTTTTTTAACTACAACCATTGGC TGTTGTTTTATTTCATTCTTTGTACACCGTTACAACATAGCAGACTTAGCAGCACTCACATATATATACCAACAAACACATATACATCATCCAAATGTTCCAATCGAGTACCTTCTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGTGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCATGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAGATGAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAGATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCATCTTCGTCCTTGGCATATAGTTC ]
[-] EMBL AU031659 [ TTTTTAACTACAACCATTGGC TGTTGTTTTATTTCATTCTTTGTACACCGTTACAACATAGCAGACTTAGCAGCACTCACATATATATACCAACAAACACATATACATCATCCAAATGTTCCAATCGAGTACCTTCTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGTGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCATGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAGATGAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAGATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCNTCTTCGTCCTTGGCATATAGTTCGACATAGCGGCGGAATGTAGGNTCTTCAACAAGAGCCTTGTCAGTAGGNAACTTCAGAAGCCCTTCTGNATTCTCTTTCAGAAGCTCAATGNAATAGGAGTTGTCAAATTTCAGTGGATCCTTTGTCCAGGNACCATNAAATCCTGATCTTTCGGGACGAGCTTTCCCGAGAGTATGGCCGCC ]
[+] EMBL CB645629 [ GCACCCCTCGCATATGTATGACGACAAGAGGGTATACATCATCCAAATGTTCCAATCGAGTACCTTCTTTTTGTACAGCCATTAGTGGTTGAGACGAAATAACGATCATTGTGATCGATGCAAATTAAATTAGCCAAGCCTCTTGTTGGATTCACAGAGGTAAGCCCATGCGACAACTGCAGCAGCAACTGCAACCCCAGCTGCAGTTTGCATCAACAGGGACTTTGGTTTCTGGCATGATTTGTAGATGAATGCAGAGCGAGGAGGCGTGAACCCCAGCTCAGATAGCTTCTTGTGCGACTCTGCATAGTCCCTGAAAAATGCATCTTCGTCCTTGGCATATAGTTCGACATAGCGGCGGAATGTAGGATCTTCAACAAGAGCCTTGTCAGTAGGCAACTTCAGAAGCCCTTCTGAATTCTCTTTCAGAAGCTCAATGAAATAGGAGTTGTCAAATTTCAGTGGATCCTTTGTCCAGGCACCATCAAATCCTGATCTTTCGGGACGAGCTTTCCCGAGAGTATGGCCGCCTGAGAGTGCTACTATGTCCTTGTCTGATAAGCCCATCCTGTAGAAGACTTCCCTCAGATGCGCAGCACCTTTCTTAGCATCTGGCAAACGGCCTTCCTCTGGGGAATCTGAAGAATCCCTCCTGCCAGGAACATAATCTATAGTTGGCCCACCGGTGACTTCAACGGCAACAAC TCCGGCAAGCTGATACAGGTCAGCAT ]
[-] EMBL C74417 [ GCATCTGG AAACGGCNTTCCTCT GGGAATCTGAAGAATCCCTCCTGCCAGGAACATAATCTATAG TGGCCCACCGGTGACTTCAACGGCAACAAC TCCGGCAAGCTGATACAGGTCAGCATAGGTAATCTTGGGATGCTTCTGTTTCATCGGTTCTAGCAGATCAATAGCAATCTTGATGCCC CATTCGCGGCGTGGCTGTACT CTGCGGGAACCTGATGGAGCCGTTGGGCCCTCCCGTCTTCGTCGCCTTGTCGTACGTGCCGGCGTCGTGCCACGCCAGGCGGAGCATGATGGGAGCGCAGCTCTTGCTGGCGATGAGGGCGCGCAGGTCGCGGCGCGCCCTCTCGACCTCCGCCATGTACTCCGCGTCCACTACC GCGCCGCCGACATCGCCGCCGCTGTTGCTGACGATCCGAGGAGAGGTGATAGGTGG ]
[-] EMBL C74365 [ TTCCTTTGGGGAATCTGAANAATCCCTCCTGCAAGGAACATAATCTATAGTTGCCCCACCGGTGACTTCAACGGCAACAACNTCCGGCAAGCTGATACAGGTCAGCATAGGTAATCTTGGGATGCTTCTGTTTCATC GNTCTAGCAGATCAATAGCAATCTTGATGCCC CATTCGCGGNGTGGCTGTACTCCTGCGGGAACCTGATGGAGCCGTTGGGCCCTCCCGTCTTCGTCGCCTTGTCGTACGTGCCGGCGTCGTGCCACGCCAGGCGGAGCATGATGGGAGCGCAGCTCTTGCTGGCGATGAGGGNGCGCAGGTCGCGGCGCGCCNTCTCGACCTCCGCCATGTACTCCGCGTCCACTACC GCGCCGCCGACATCGCCGCCGCTGTTGCTGACGATCCGAGGAGAGGTGATAGGTGGA]
[-] EMBL OSR02881A [ CCACCGGTGACTTCAACGGCAACAAC TCCGGCAAGCTGATACAGGTCAGCATAGGTAATCTTGGGATGCTTCTGTTTCATCGGTTCTAGCAGATCAATAGCAATCTTGATGCCCGCATTCGCGGCGTGGCTGTACTCCTGCGGGAACCTGATGGAGCCGTTGGGCCCTCCCGTCTTCGTCGCCTTGTCGTACGTGCCGGCGTCGTGCCACGCCAGGCGGAGCATGATGGGAGCGCAGCTCTTGCTGGCGATGAGGGCGCGCAGGTCGCGGCGCGCCCTCTCGACCTCCGCCATGTACTCCGCGTCCACTACCGGCGCCGCCGACATCGCCGCCGCTGTTGCTGACGATCCGAGGAGAGG ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||