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Oryza sativa
cluster # 11336 cluster # 11336       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11336#0 length = 1118 sequences # 6  
consensus_11336#1 length = 516 sequences # 2  

consensusID : consensus_11336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1118
fasta sequence
                              [CGGACGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGATGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT-CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG-TTACCGTCTCATTGGCAATGTC-TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTACACATGATCGAAGAACAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTTGAGTGCTAATTTTCGAGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAGGAAAATGTAGTGAAGGTTGTCTTATTGCATTGCAAGTAATGAATTGTCATACACTACTACAGCTTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATCTTAGAATATAAGGGAAAAAAGCGGTTATTTCCATGTCTCAAAAAAA]

[+] EMBL CB682195             [CGGACGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGATGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG TTACCGTCTCATTGGCAATGTCTTTTGGTATTTAAATGTTC ATTTGTAAT                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB682921             [CGGACCTTATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGATGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGGTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG TTACCGTCTCATTGGCAATGTC TTTGG                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL C27700               [              TTAATGATGGAGCACATCATTTTAATGATAGAGGGCATCCNTTCNATGATAGAGGGAATNACTTCNATGATAGAGGACATCANTTTAATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTAATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTAATGGTCCGTCCACCCCATTTAATTGTAGGCANCCATCGATTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB682922             [                                                                     GAATTTCTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG TTACCGTCTCATTGGCAATGTC TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGGTACACATGATCGAAGAACA                                                                                                                                                                                                                                                                  ]
[+] EMBL BQ908362             [                                                                                                                                                                                                                                                                                                                                                     GTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTC  AACTTTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGGTTTACCGTCTCATTGGCAATGTC TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTAaaaaaaaaa                                                                                                                                                                                                                                                                          ]
[-] EMBL CA760901             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAAGGGCTATATAATTNTGATCTGGTCTTTTCCTCGTTTNTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGGTTTACCGTCTCATTGGCAATGTC TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTACACATGATCGAAGAGCAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTTGAGTGCTAATTTTCGAGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAGGAAAATGTAGTGAAGGTTGTCTTATTGCATTGCAAGTAATGAATTGTCATACACTACTACAGCTTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATCTTAGAATATAAGGGAAAAAAGCGGTTATTTCCATGTCTCAAAAAAA]


>consensus_11336#0 CGGACGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGA TGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGG ACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCC ATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCC TCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGG CCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAG ACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTAC CTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGG ATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTTGA GCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGA CAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGC AAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTT ACCCATAGATTATGTCGTTAGCCTAGCGGTTACCGTCTCATTGGCAATGTCTTTGGTATT TAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGG TTACACATGATCGAAGAACAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTTGAG TGCTAATTTTCGAGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAGGAA AATGTAGTGAAGGTTGTCTTATTGCATTGCAAGTAATGAATTGTCATACACTACTACAGC TTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATCTTAGAATA TAAGGGAAAAAAGCGGTTATTTCCATGTCTCAAAAAAA



consensusID : consensus_11336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 516
fasta sequence
                              [TTGGAAGGGAAGGAGGGAAAGAACACCAAATCCATGATAACACCACCTAGATGACTGGGACAGAGGAGCTTTCCACCTCATTTACCTCAACTTTTGCCGAGCCTCAGCTGCGAGTGCCAAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTTGA-CCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGAC-AAAGAGATGGAACCGGCCCCACCTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTAT-TC-TTACCCTA-CCGTTTACCGTCTCATTGCCAAT-TTCTTTGTATTTAAATGTTCAATTTGTAACCCAAATGTTAATTTAAATACATTAAACTGACCTGATTAGGTTTACACAAAAAAAAAA]

[+] EMBL BM038460             [TTGGAAGGGAAGGAGGGAAAGAACACCAAATCCATGATAACACCACCTAGATGACTGGGACAGAGGAGCTTTCCACCTCATTTACCTCAACTTTTGCCGAGCCTCAGCTGCGAGTGCCAAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTTGA CCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGAC AAAGAGATGGAACCGGCCCCACCTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTAT TC TTACCCTA CCGTTTACCGTCTCATTGCCAAT TTCTTTGTATTTAAATGTTCAATTTGTAACCCAAATGTTAATTTAAATACATTAAACTGACCTGATTAGGTTTACACAAAAAAAAAA]
[+] EMBL AU222511             [                                                                                                   AGCCTCAGCTGCGAGTGGC AATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTNTCCGTTCATGTGCGGGCTTACCATGAAATNTCCTTGACAAAANAGATGGAACCGGCCCC NCTGTACATATGTATCTTAGTTCTTAGCNCTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAANAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTANCGGTTTACCGTCTCATTGGCAATGTTTTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTAAAAAAAAAAAAAA]


>consensus_11336#1 TTGGAAGGGAAGGAGGGAAAGAACACCAAATCCATGATAACACCACCTAGATGACTGGGA CAGAGGAGCTTTCCACCTCATTTACCTCAACTTTTGCCGAGCCTCAGCTGCGAGTGCCAA ATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTT GATCTGGTCTTTTCTCGTTTTTGACCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCG GGCTTACCATGAAATCTCCTTGACAAAGAGATGGAACCGGCCCCACCTGTACATATGTAT CTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAG AGATGTCCTGTATCAGTTTAGTTACCCATAGATTATTCTTACCCTACCGTTTACCGTCTC ATTGCCAATTTCTTTGTATTTAAATGTTCAATTTGTAACCCAAATGTTAATTTAAATACA TTAAACTGACCTGATTAGGTTTACACAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11336#0      CGGACGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGA 60
consensus_11336#1      ------------------------------------------------------------
                                                                                   

consensus_11336#0      TGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGG 120
consensus_11336#1      ------------------------------------------------------------
                                                                                   

consensus_11336#0      ACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCC 180
consensus_11336#1      ------------------------------------------------------------
                                                                                   

consensus_11336#0      ATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCC 240
consensus_11336#1      ------------------------------------------------------------
                                                                                   

consensus_11336#0      TCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGG 300
consensus_11336#1      ------------------------------------------------------------
                                                                                   

consensus_11336#0      CCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAG 360
consensus_11336#1      -----------------------------------TTGGAAGGGAAGGAGGGAAAGAACA 25
                                                            *** *     *  **** * *  

consensus_11336#0      ACACAATCATGATAA-ACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTA 419
consensus_11336#1      CCAAATCCATGATAACACCACCTAGATGACTGGGA-CAGAGGAGCTTTCCACCTCATTTA 84
                        ** *  ******** **  *************** ************************

consensus_11336#0      CCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAA-TATATTTCGTTACTGGAGCTC 478
consensus_11336#1      CCTC--AACTTTTGCCGAGCCTCAGCTGCGAGTGCCAAATATATTTCGTTACTGGAGCTC 142
                       ****  **** *********************** *** *********************

consensus_11336#0      GGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTT 538
consensus_11336#1      GGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTT 202
                       ************************************************************

consensus_11336#0      GAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTT 598
consensus_11336#1      GA-CCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTT 261
                       ** *********************************************************

consensus_11336#0      GACAAAAGAGATGGAACCGGCCCCAC-TGTACATATGTATCTTAGTTCTTAGCACTGTTC 657
consensus_11336#1      GACAAA-GAGATGGAACCGGCCCCACCTGTACATATGTATCTTAGTTCTTAGCACTGTTC 320
                       ****** ******************* *********************************

consensus_11336#0      TGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTA 717
consensus_11336#1      TGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTA 380
                       *************************** ********************************

consensus_11336#0      GTTACCCATAGATTATGTCGTTAGCCTAGCGGTTACCGTCTCATTGGCAATGTCTTTGGT 777
consensus_11336#1      GTTACCCATAGATTATTC--TTACCCTACCGTTTACCGTCTCATTGCCAATTTCTTTG-T 437
                       ****************    *** **** ** ************** **** ****** *

consensus_11336#0      ATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTA 837
consensus_11336#1      ATTTAAATGTTCAATTTGTAACCCAAATGTTAATTTAAATACATTAAACTGACCTGATTA 497
                       ********************* ****************************** *******

consensus_11336#0      GGGTTACACATGATCGAAGAACAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTT 897
consensus_11336#1      GGTTTACACAAAAAAAAAA----------------------------------------- 516
                       ** *******  *   **                                          

consensus_11336#0      GAGTGCTAATTTTCGAGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAG 957
consensus_11336#1      ------------------------------------------------------------
                                                                                   

consensus_11336#0      GAAAATGTAGTGAAGGTTGTCTTATTGCATTGCAAGTAATGAATTGTCATACACTACTAC 1017
consensus_11336#1      ------------------------------------------------------------
                                                                                   

consensus_11336#0      AGCTTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATCTTAGA 1077
consensus_11336#1      ------------------------------------------------------------
                                                                                   

consensus_11336#0      ATATAAGGGAAAAAAGCGGTTATTTCCATGTCTCAAAAAAA 1118
consensus_11336#1      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)