These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1118 fasta sequence [CGGACGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGATGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT-CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG-TTACCGTCTCATTGGCAATGTC-TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTACACATGATCGAAGAACAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTTGAGTGCTAATTTTCGAGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAGGAAAATGTAGTGAAGGTTGTCTTATTGCATTGCAAGTAATGAATTGTCATACACTACTACAGCTTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATCTTAGAATATAAGGGAAAAAAGCGGTTATTTCCATGTCTCAAAAAAA] [+] EMBL CB682195 [CGGACGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGATGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG TTACCGTCTCATTGGCAATGTCTTTTGGTATTTAAATGTTC ATTTGTAAT ] [+] EMBL CB682921 [CGGACCTTATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGATGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGGTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG TTACCGTCTCATTGGCAATGTC TTTGG ] [+] EMBL C27700 [ TTAATGATGGAGCACATCATTTTAATGATAGAGGGCATCCNTTCNATGATAGAGGGAATNACTTCNATGATAGAGGACATCANTTTAATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTAATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTAATGGTCCGTCCACCCCATTTAATTGTAGGCANCCATCGATTCC ] [-] EMBL CB682922 [ GAATTTCTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGG TTACCGTCTCATTGGCAATGTC TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGGTACACATGATCGAAGAACA ] [+] EMBL BQ908362 [ GTTGGAGGAGGAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTACCTC AACTTTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTT CTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGGTTTACCGTCTCATTGGCAATGTC TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTAaaaaaaaaa ] [-] EMBL CA760901 [ TGGCAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAAGGGCTATATAATTNTGATCTGGTCTTTTCCTCGTTTNTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGGTTTACCGTCTCATTGGCAATGTC TTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTACACATGATCGAAGAGCAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTTGAGTGCTAATTTTCGAGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAGGAAAATGTAGTGAAGGTTGTCTTATTGCATTGCAAGTAATGAATTGTCATACACTACTACAGCTTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATCTTAGAATATAAGGGAAAAAAGCGGTTATTTCCATGTCTCAAAAAAA] consensusID : consensus_11336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 516 fasta sequence [TTGGAAGGGAAGGAGGGAAAGAACACCAAATCCATGATAACACCACCTAGATGACTGGGACAGAGGAGCTTTCCACCTCATTTACCTCAACTTTTGCCGAGCCTCAGCTGCGAGTGCCAAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTTGA-CCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGAC-AAAGAGATGGAACCGGCCCCACCTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTAT-TC-TTACCCTA-CCGTTTACCGTCTCATTGCCAAT-TTCTTTGTATTTAAATGTTCAATTTGTAACCCAAATGTTAATTTAAATACATTAAACTGACCTGATTAGGTTTACACAAAAAAAAAA] [+] EMBL BM038460 [TTGGAAGGGAAGGAGGGAAAGAACACCAAATCCATGATAACACCACCTAGATGACTGGGACAGAGGAGCTTTCCACCTCATTTACCTCAACTTTTGCCGAGCCTCAGCTGCGAGTGCCAAATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTTGA CCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTTGAC AAAGAGATGGAACCGGCCCCACCTGTACATATGTATCTTAGTTCTTAGCACTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTAGTTACCCATAGATTAT TC TTACCCTA CCGTTTACCGTCTCATTGCCAAT TTCTTTGTATTTAAATGTTCAATTTGTAACCCAAATGTTAATTTAAATACATTAAACTGACCTGATTAGGTTTACACAAAAAAAAAA] [+] EMBL AU222511 [ AGCCTCAGCTGCGAGTGGC AATATATTTCGTTACTGGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTTGAGCCGTGAAGAGTCCTTCAATGTNTCCGTTCATGTGCGGGCTTACCATGAAATNTCCTTGACAAAANAGATGGAACCGGCCCC NCTGTACATATGTATCTTAGTTCTTAGCNCTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAANAGATGTCCTGTATCAGTTTAGTTACCCATAGATTATGTCGTTAGCCTANCGGTTTACCGTCTCATTGGCAATGTTTTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTAGGGTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11336#0 CGGACGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGA 60 consensus_11336#1 ------------------------------------------------------------ consensus_11336#0 TGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGG 120 consensus_11336#1 ------------------------------------------------------------ consensus_11336#0 ACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCC 180 consensus_11336#1 ------------------------------------------------------------ consensus_11336#0 ATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCC 240 consensus_11336#1 ------------------------------------------------------------ consensus_11336#0 TCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGG 300 consensus_11336#1 ------------------------------------------------------------ consensus_11336#0 CCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAG 360 consensus_11336#1 -----------------------------------TTGGAAGGGAAGGAGGGAAAGAACA 25 *** * * **** * * consensus_11336#0 ACACAATCATGATAA-ACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCACCTCATTTA 419 consensus_11336#1 CCAAATCCATGATAACACCACCTAGATGACTGGGA-CAGAGGAGCTTTCCACCTCATTTA 84 ** * ******** ** *************** ************************ consensus_11336#0 CCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAA-TATATTTCGTTACTGGAGCTC 478 consensus_11336#1 CCTC--AACTTTTGCCGAGCCTCAGCTGCGAGTGCCAAATATATTTCGTTACTGGAGCTC 142 **** **** *********************** *** ********************* consensus_11336#0 GGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTT 538 consensus_11336#1 GGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCTCGTTTTT 202 ************************************************************ consensus_11336#0 GAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTT 598 consensus_11336#1 GA-CCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAATCTCCTT 261 ** ********************************************************* consensus_11336#0 GACAAAAGAGATGGAACCGGCCCCAC-TGTACATATGTATCTTAGTTCTTAGCACTGTTC 657 consensus_11336#1 GACAAA-GAGATGGAACCGGCCCCACCTGTACATATGTATCTTAGTTCTTAGCACTGTTC 320 ****** ******************* ********************************* consensus_11336#0 TGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATCAGTTTA 717 consensus_11336#1 TGCAAATGCAGAAACGGGAGGGAGTTCTATTGTGGGGAAGAGATGTCCTGTATCAGTTTA 380 *************************** ******************************** consensus_11336#0 GTTACCCATAGATTATGTCGTTAGCCTAGCGGTTACCGTCTCATTGGCAATGTCTTTGGT 777 consensus_11336#1 GTTACCCATAGATTATTC--TTACCCTACCGTTTACCGTCTCATTGCCAATTTCTTTG-T 437 **************** *** **** ** ************** **** ****** * consensus_11336#0 ATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAACTGATTA 837 consensus_11336#1 ATTTAAATGTTCAATTTGTAACCCAAATGTTAATTTAAATACATTAAACTGACCTGATTA 497 ********************* ****************************** ******* consensus_11336#0 GGGTTACACATGATCGAAGAACAGAGGTTTGGAATTTTTGGATTGATAGTTTCATTTGTT 897 consensus_11336#1 GGTTTACACAAAAAAAAAA----------------------------------------- 516 ** ******* * ** consensus_11336#0 GAGTGCTAATTTTCGAGAGGAATGCACTGCAAAATTTTCAAGAGGAATAAGGAAAGGTAG 957 consensus_11336#1 ------------------------------------------------------------ consensus_11336#0 GAAAATGTAGTGAAGGTTGTCTTATTGCATTGCAAGTAATGAATTGTCATACACTACTAC 1017 consensus_11336#1 ------------------------------------------------------------ consensus_11336#0 AGCTTTCAAGATTAGTATAGAGGCTTAGTTACAAATTGCATCGACATGCCTAATCTTAGA 1077 consensus_11336#1 ------------------------------------------------------------ consensus_11336#0 ATATAAGGGAAAAAAGCGGTTATTTCCATGTCTCAAAAAAA 1118 consensus_11336#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||