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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1735 fasta sequence
[ACAAGCCGGGAACAACAAACGTGGTGGCAGACGCCCTCTCCAGAAGGGACGAACACCTGGCTGAAGCTCTCGCCTTGTCAGCCCCTCAGTTCTCTCTGTTTGATGAGCTGCGGCACGAGGTGCTCACGTCGCCCGAGCTGACTGCCATTCGGGATGACATTGCCAAGGGGTCAAAACCGCCGGCCTGGGCGTTCACGGACGGCCTCATCACGTTCAAAGGCCGTATCTTTGTGTCTGCATCATCACCATCCTTGCCGGCCATCCTCGAACTGGCACACGGCCTGGGGCACGAGGGCACGCAGAATACGCTCTCTCGCCTCCGAGCTGACTTCCACCTCGCACGGGACAGGGCGGTGGTACAAGAGCATGCCCGAGCCTGTTTCACGTGTCAGCAAAACAAGACGGAGCACCTACAACCGGCCGGCCTCTTGCAATCCTTGCCGGTGCCATCGGCGGTGTGGGCTGACATCGCCATGGATTTTGTGGAGGGTCTGCCACGCGTCCATGGCAAGACGGTCATCTTAACGGTGGTGGACCGTTTCTCCAAGTTTGCCCACTTTATACCAATGGCTCATCCCTACACGGCAACCTCGGTGGCAGCGGCCTTCTTCTCGGAAATTGTTCGTCTGCATGGTGTTCCAGCTTCTATTGTCAGTGATCGTGATCCGGTCTTCACCAGCACTTTCTGGCGGGAGTTGTTCAGATTGGCCGGAGTACGACTGAACTTGTCGTCGGCATTTCATCCTCAGTCTGACGGTCAGTCCGAGGTGACGAACAAGATCATTGCGATGTATCTCCGTTGTCTTACCGGCGATCGGCCGCGGCACTGGCTACGGTGGCTTCCATGGGCAGAGTACTGCTACAACACGTCCTACCAGTCATCTCTTCGCACGTCGCCGTTCCGTGTGGTTTATGGCCGTGAGCCGCCTACGCTGCGCGCCTATGAACCGGGATCCACTCGTCTGCTGGCAGTCCAACAGGCGATGCAAGATCGAGATGAATTTTTGCGTGAGATTCGTGATCGCCTGGAGCAAGCGCAGCAGACACACAAGTCGGCGTATGATGGCAAGCATCGGGCATTGGAATTCAGTGTGGGCGACTGGTTGTGGCTTCGTTTGCTCCATCGCCCGATTGCTTCGCTCGGGGTCACCGGCCGTGGTAAGTTGGGGCCTAAATTTTACGGGCTGTACAGGGTTGCCGAGCGGATTGGTTCTGTGGCATATCGTCTTCAGCTTCCTCCGGGTGCTCGCTTGCATGATGTGTTTCACGTGAGGTTGTTGAAGCCATTTTGTGGAACTCCGCCGGATTCTGTTCCACCGTTACCGCCCATTCAACACGGCCAAGTGTGTTTGCAGCCTGCTGCAGTTACGCAGAGTCGATTGGCTCGTGGAGTTCGTCAAGTTCTTGTTCAGTGGAAGGATAAGCCTTCTGCCGAAGCTTCATGGATGCCTTTGGATGAATTTCGCACTCTTCATCCGGATTTTCAGCTCGAGGACGAGCTGCTTCTCCAGGGGGGAGAGATGTCATGTGGGGATTGCAATACAAGCGTCGCAGCAACAGGCGGGCGACGGCAAGGCGTGACGAGGAATAGTTTTTTACTTCTGTTTTGATTCGGTTCAGAGTTTGTTAGATAGTTTGTTAGTTTCTTATTCCGTAAGTTGTTAGGAGTCTATCCTTTAGAATTGCTATATAATCTGTAAGACAGTTTGGTTTTGGAATCAATCAATTACGTGAG]
[+] EMBL AK109891 [ACAAGCCGGGAACAACAAACGTGGTGGCAGACGCCCTCTCCAGAAGGGACGAACACCTGGCTGAAGCTCTCGCCTTGTCAGCCCCTCAGTTCTCTCTGTTTGATGAGCTGCGGCACGAGGTGCTCACGTCGCCCGAGCTGACTGCCATTCGGGATGACATTGCCAAGGGGTCAAAACCGCCGGCCTGGGCGTTCACGGACGGCCTCATCACGTTCAAAGGCCGTATCTTTGTGTCTGCATCATCACCATCCTTGCCGGCCATCCTCGAACTGGCACACGGCCTGGGGCACGAGGGCACGCAGAATACGCTCTCTCGCCTCCGAGCTGACTTCCACCTCGCACGGGACAGGGCGGTGGTACAAGAGCATGCCCGAGCCTGTTTCACGTGTCAGCAAAACAAGACGGAGCACCTACAACCGGCCGGCCTCTTGCAATCCTTGCCGGTGCCATCGGCGGTGTGGGCTGACATCGCCATGGATTTTGTGGAGGGTCTGCCACGCGTCCATGGCAAGACGGTCATCTTAACGGTGGTGGACCGTTTCTCCAAGTTTGCCCACTTTATACCAATGGCTCATCCCTACACGGCAACCTCGGTGGCAGCGGCCTTCTTCTCGGAAATTGTTCGTCTGCATGGTGTTCCAGCTTCTATTGTCAGTGATCGTGATCCGGTCTTCACCAGCACTTTCTGGCGGGAGTTGTTCAGATTGGCCGGAGTACGACTGAACTTGTCGTCGGCATTTCATCCTCAGTCTGACGGTCAGTCCGAGGTGACGAACAAGATCATTGCGATGTATCTCCGTTGTCTTACCGGCGATCGGCCGCGGCACTGGCTACGGTGGCTTCCATGGGCAGAGTACTGCTACAACACGTCCTACCAGTCATCTCTTCGCACGTCGCCGTTCCGTGTGGTTTATGGCCGTGAGCCGCCTACGCTGCGCGCCTATGAACCGGGATCCACTCGTCTGCTGGCAGTCCAACAGGCGATGCAAGATCGAGATGAATTTTTGCGTGAGATTCGTGATCGCCTGGAGCAAGCGCAGCAGACACACAAGTCGGCGTATGATGGCAAGCATCGGGCATTGGAATTCAGTGTGGGCGACTGGTTGTGGCTTCGTTTGCTCCATCGCCCGATTGCTTCGCTCGGGGTCACCGGCCGTGGTAAGTTGGGGCCTAAATTTTACGGGCTGTACAGGGTTGCCGAGCGGATTGGTTCTGTGGCATATCGTCTTCAGCTTCCTCCGGGTGCTCGCTTGCATGATGTGTTTCACGTGAGGTTGTTGAAGCCATTTTGTGGAACTCCGCCGGATTCTGTTCCACCGTTACCGCCCATTCAACACGGCCAAGTGTGTTTGCAGCCTGCTGCAGTTACGCAGAGTCGATTGGCTCGTGGAGTTCGTCAAGTTCTTGTTCAGTGGAAGGATAAGCCTTCTGCCGAAGCTTCATGGATGCCTTTGGATGAATTTCGCACTCTTCATCCGGATTTTCAGCTCGAGGACGAGCTGCTTCTCCAGGGGGGAGAGATGTCATGTGGGGATTGCAATACAAGCGTCGCAGCAACAGGCGGGCGACGGCAAGGCGTGACGAGGAATAGTTTTTTACTTCTGTTTTGATTCGGTTCAGAGTTTGTTAGATAGTTTGTTAGTTTCTTATTCCGTAAGTTGTTAGGAGTCTATCCTTTAGAATTGCTATATAATCTGTAAGACAGTTTGGTTTTGGAATCAATCAATTACGTGAG]
consensusID : consensus_1134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[TTTGAACCATATGAGGTTGCAGAACGTATTGGCTCTGTGGCTTATCGTCTTCTTCTTCCGCCGGGTGCTTGGTTGCACAATGTCTTCCATGTGGGTCTGCTGAAGCCTTTTCGAGGAGTACCGCCAGCTTCGGTACCGCCGTTGCCACCAACTCAACATGGGGAAGTTTGTCTCCAGCCGGCGTTGGTTTTGCAGAGTCGTTTGGCCCGTGGCGTTCGTGAAGTTTTGGTTCAGTGGAAAGACAAGCCAGCTGCGGATGCTTCCTGGATGGCGCTGGATGATTTTCGGTCCTGGTACCCAGATTTTCAGCTTGAGGACGAGCTGCTTCTCCAGGGAGGGAGAGATGTCATGTGGGACTTCAATACCAGCGCCGCCGCCGCAGGTCTCCTAGCGCCAATGCGTGACGGCAAACTGTTTCGTTTTCCTTTTGGATTGGAGTTTGTTATGGAGTTTGTTAGTTTTTATCTCTTGGTTTGTTAGGACTTTATCCCTTAGTTATGCATATTCTGTACGTGAGTTTAGTTGGAATCAATCAATCAAGTTC]
[+] EMBL AK059506 [TTTGAACCATATGAGGTTGCAGAACGTATTGGCTCTGTGGCTTATCGTCTTCTTCTTCCGCCGGGTGCTTGGTTGCACAATGTCTTCCATGTGGGTCTGCTGAAGCCTTTTCGAGGAGTACCGCCAGCTTCGGTACCGCCGTTGCCACCAACTCAACATGGGGAAGTTTGTCTCCAGCCGGCGTTGGTTTTGCAGAGTCGTTTGGCCCGTGGCGTTCGTGAAGTTTTGGTTCAGTGGAAAGACAAGCCAGCTGCGGATGCTTCCTGGATGGCGCTGGATGATTTTCGGTCCTGGTACCCAGATTTTCAGCTTGAGGACGAGCTGCTTCTCCAGGGAGGGAGAGATGTCATGTGGGACTTCAATACCAGCGCCGCCGCCGCAGGTCTCCTAGCGCCAATGCGTGACGGCAAACTGTTTCGTTTTCCTTTTGGATTGGAGTTTGTTATGGAGTTTGTTAGTTTTTATCTCTTGGTTTGTTAGGACTTTATCCCTTAGTTATGCATATTCTGTACGTGAGTTTAGTTGGAATCAATCAATCAAGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1134#0 ACAAGCCGGGAACAACAAACGTGGTGGCAGACGCCCTCTCCAGAAGGGACGAACACCTGG 60
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 CTGAAGCTCTCGCCTTGTCAGCCCCTCAGTTCTCTCTGTTTGATGAGCTGCGGCACGAGG 120
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 TGCTCACGTCGCCCGAGCTGACTGCCATTCGGGATGACATTGCCAAGGGGTCAAAACCGC 180
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 CGGCCTGGGCGTTCACGGACGGCCTCATCACGTTCAAAGGCCGTATCTTTGTGTCTGCAT 240
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 CATCACCATCCTTGCCGGCCATCCTCGAACTGGCACACGGCCTGGGGCACGAGGGCACGC 300
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 AGAATACGCTCTCTCGCCTCCGAGCTGACTTCCACCTCGCACGGGACAGGGCGGTGGTAC 360
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 AAGAGCATGCCCGAGCCTGTTTCACGTGTCAGCAAAACAAGACGGAGCACCTACAACCGG 420
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 CCGGCCTCTTGCAATCCTTGCCGGTGCCATCGGCGGTGTGGGCTGACATCGCCATGGATT 480
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 TTGTGGAGGGTCTGCCACGCGTCCATGGCAAGACGGTCATCTTAACGGTGGTGGACCGTT 540
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 TCTCCAAGTTTGCCCACTTTATACCAATGGCTCATCCCTACACGGCAACCTCGGTGGCAG 600
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 CGGCCTTCTTCTCGGAAATTGTTCGTCTGCATGGTGTTCCAGCTTCTATTGTCAGTGATC 660
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 GTGATCCGGTCTTCACCAGCACTTTCTGGCGGGAGTTGTTCAGATTGGCCGGAGTACGAC 720
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 TGAACTTGTCGTCGGCATTTCATCCTCAGTCTGACGGTCAGTCCGAGGTGACGAACAAGA 780
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 TCATTGCGATGTATCTCCGTTGTCTTACCGGCGATCGGCCGCGGCACTGGCTACGGTGGC 840
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 TTCCATGGGCAGAGTACTGCTACAACACGTCCTACCAGTCATCTCTTCGCACGTCGCCGT 900
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 TCCGTGTGGTTTATGGCCGTGAGCCGCCTACGCTGCGCGCCTATGAACCGGGATCCACTC 960
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 GTCTGCTGGCAGTCCAACAGGCGATGCAAGATCGAGATGAATTTTTGCGTGAGATTCGTG 1020
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 ATCGCCTGGAGCAAGCGCAGCAGACACACAAGTCGGCGTATGATGGCAAGCATCGGGCAT 1080
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 TGGAATTCAGTGTGGGCGACTGGTTGTGGCTTCGTTTGCTCCATCGCCCGATTGCTTCGC 1140
consensus_1134#1 ------------------------------------------------------------
consensus_1134#0 TCGGGGTCACCGGCCGTGGTAAGTTGGGGCCTAAATTTTACGGGCTGTACAGGGTTGCCG 1200
consensus_1134#1 --------------------------------------TTTGAACCATATGAGGTTGCAG 22
* * * ** ****** *
consensus_1134#0 AGCGGATTGGTTCTGTGGCATATCGTCTTCAGCTTCCTCCGGGTGCTCGCTTGCATGATG 1260
consensus_1134#1 AACGTATTGGCTCTGTGGCTTATCGTCTTCTTCTTCCGCCGGGTGCTTGGTTGCACAATG 82
* ** ***** ******** ********** ***** ********* * ***** ***
consensus_1134#0 TGTTTCACGTGAGGTTGTTGAAGCCATTTTGTGGAACTCCGCCGGATTCTGTTCCACCGT 1320
consensus_1134#1 TCTTCCATGTGGGTCTGCTGAAGCCTTTTCGAGGAGTACCGCCAGCTTCGGTACCGCCGT 142
* ** ** *** * ** ******* *** * *** ***** * *** ** ** ****
consensus_1134#0 TACCGCCCATTCAACACGGCCAAGTGTGTTTGCAGCCTGCTGCAGTTACGCAGAGTCGAT 1380
consensus_1134#1 TGCCACCAACTCAACATGGGGAAGTTTGTCTCCAGCCGGCGTTGGTTTTGCAGAGTCGTT 202
* ** ** * ****** ** **** *** * ***** ** *** ********* *
consensus_1134#0 TGGCTCGTGGAGTTCGTCAAGTTCTTGTTCAGTGGAAGGATAAGCCTTCTGCCGAAGCTT 1440
consensus_1134#1 TGGCCCGTGGCGTTCGTGAAGTTTTGGTTCAGTGGAAAGACAAGCCAGCTGCGGATGCTT 262
**** ***** ****** ***** * *********** ** ***** **** ** ****
consensus_1134#0 CATGGATGCCTTTGGATGAATTTCGCACTCTTCATCCGGATTTTCAGCTCGAGGACGAGC 1500
consensus_1134#1 CCTGGATGGCGCTGGATGATTTTCGGTCCTGGTACCCAGATTTTCAGCTTGAGGACGAGC 322
* ****** * ******* ***** * * ** *********** **********
consensus_1134#0 TGCTTCTCCAGGG-GGGAGAGATGTCATGTGGGGATTGCAATACAAGCGTCGCAGCAACA 1559
consensus_1134#1 TGCTTCTCCAGGGAGGGAGAGATGTCATGTGGG-ACTTCAATACCAGCGCCGCCGCCGCA 381
************* ******************* * * ****** **** *** ** **
consensus_1134#0 GGCGGGCGA-CGGCAAGGCGTGACGAGGAATAGTTTTTTACTTCTGTTTTGATTCGGTTC 1618
consensus_1134#1 GGTCTCCTAGCGCCAATGCGTGACGGCAAACTGTTTCGTTTTCCT-------TTTGGATT 434
** * * ** *** ******** ** **** * * ** ** ** *
consensus_1134#0 AGAGTTTGTTAGATAGTTTGTTAGTTTCTTATTCCGTAAGTTGTTAGGAGTCTATCCTTT 1678
consensus_1134#1 GGAGTTTGTTATGGAGTTTGTTAGTTT-TTATCTCTTGGTTTGTTAGGACTTTATCCCTT 493
********** ************* **** * * ********* * ***** **
consensus_1134#0 AGAATTGCTATATAATCTGTAAGACAGTTTGGTTTTGGAATCAATCAATTACGTGAG 1735
consensus_1134#1 AGTTATGC---ATATTCTGTACGTGAGTTTAGTT--GGAATCAATCAATCAAGTTC- 544
** *** *** ****** * ***** *** ************* * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||