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Oryza sativa
cluster # 11341 cluster # 11341       Sequences # 8       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11341#0 length = 1544 sequences # 3  
consensus_11341#1 length = 694 sequences # 1  
consensus_11341#2 length = 597 sequences # 1  
consensus_11341#3 length = 588 sequences # 2  
consensus_11341#4 length = 167 sequences # 1  

consensusID : consensus_11341#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1544
fasta sequence
                              [AAAACTTTCTCGTCCTAATCGCGACGAGCTCGAAACGAACATGGCCGGCGGCGATGGCGGCGGCGGCGGGGGAGACGAGAGCGAGTTTGTGGGGGTAGGCGGCGGCGGAGGAGGAGGAGGAGAAGGAGAAGGGAACCAGAGCCCCCCCAACCGTAGGTTCTTCGTGGCCGTGCACGTCGGCGCCGGCTTCCACGCGCCGGCGAACGAGAAGGCGTACCGCCGAGCCATGAAGCGCGCTTGCCTCGCCGCCGCCGCAGTGCTCCGCGAGGGAAATGGCACAAGCCTTGATGCGGTTGCAGCTGCCATTCAAGTATTGGAGGATGATCCCATCACAAATGCTGGACGCGGTTCAAATTTGACTGAGAGTGGTCATGTGGAATGCGATGCAAGTATCATGGATGGTTCTACTACTACCTTTGGAGCTGTTGGAGCTGTGCAAGGTGTAAAGAATCCCATCCAAATTGCTTTGCACTTGGCAAGGGAACAGATGGTAGGACCTTCACTGCTTGGTCGGATACCCCCTATGTTTTTGGTTGGTGAAGGAGCATGCCAGTGGGCAAAATCGAAGGGGTTGAACCTACCTGAAGCCACATCAGAGGGAAATAGTTGGTTGGTGACTGAGAGTGCAAAAGCACAGTGGGGAAAATACAGATCATTGCTTGCAAGTGCCAAGGAATCAGTTAATCATAGCACTGGTTCTGGTTCAGAATCTAGTTCAGTACAGTTGGAAGCACCAGGAGCTGAAGCTGAGGATATTACTGGTGTAAAGAAGATGAAGATGATCACACGATCAATCATGGAGGATGATCAAGACTGCGTGATGGATACTGTTGGTGCTGTTTGTGTTGATGCTTATGGAAATATAGCATCAGGAGCATCCAGTGGTGGCATTGCACTAAAGGTAGATGGACGGGTTGGTTTGGCTGCTATGTATGGGTCTGGGTGCTGGGCCTCATCCAAAGGGCCCTTTGGCACACCGTTTATAGTTGGGTGTTGTGCAACTGGAGCCGGTGAACACTTGATTAGAGGATTTGCTGCACGTGAATGTTGTATCTCATCATCATTGATACAATCTGGCCCTGCTTCTGCTTGTACCAAAGTTCTGCGCCAAGCGGTTCAAAGCAGCAGCGAGATGTCTCATGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGAGAGGGGAGGTATCTGCATTGGGAGCCGCTGAACTTGTTGCTGCCTATTCCTCCCCTTCATTTGGTGTTGGTTATCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGCACAATCTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGTACCTCTTGTGAAAAGAGCATGTTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGATATTGTTTTTGGCCTAACCCAAAATTTCTGTCGTTCCTAATACTTTTTTTTTTACCGATGAAATGCTATTTTAGT]

[+] EMBL AK064978             [AAAACTTTCTCGTCCTAATCGCGACGAGCTCGAAACGAACATGGCCGGCGGCGATGGCGGCGGCGGCGGGGGAGACGAGAGCGAGTTTGTGGGGGTAGGCGGCGGCGGAGGAGGAGGAGGAGAAGGAGAAGGGAACCAGAGCCCCCCCAACCGTAGGTTCTTCGTGGCCGTGCACGTCGGCGCCGGCTTCCACGCGCCGGCGAACGAGAAGGCGTACCGCCGAGCCATGAAGCGCGCTTGCCTCGCCGCCGCCGCAGTGCTCCGCGAGGGAAATGGCACAAGCCTTGATGCGGTTGCAGCTGCCATTCAAGTATTGGAGGATGATCCCATCACAAATGCTGGACGCGGTTCAAATTTGACTGAGAGTGGTCATGTGGAATGCGATGCAAGTATCATGGATGGTTCTACTACTACCTTTGGAGCTGTTGGAGCTGTGCAAGGTGTAAAGAATCCCATCCAAATTGCTTTGCACTTGGCAAGGGAACAGATGGTAGGACCTTCACTGCTTGGTCGGATACCCCCTATGTTTTTGGTTGGTGAAGGAGCATGCCAGTGGGCAAAATCGAAGGGGTTGAACCTACCTGAAGCCACATCAGAGGGAAATAGTTGGTTGGTGACTGAGAGTGCAAAAGCACAGTGGGGAAAATACAGATCATTGCTTGCAAGTGCCAAGGAATCAGTTAATCATAGCACTGGTTCTGGTTCAGAATCTAGTTCAGTACAGTTGGAAGCACCAGGAGCTGAAGCTGAGGATATTACTGGTGTAAAGAAGATGAAGATGATCACACGATCAATCATGGAGGATGATCAAGACTGCGTGATGGATACTGTTGGTGCTGTTTGTGTTGATGCTTATGGAAATATAGCATCAGGAGCATCCAGTGGTGGCATTGCACTAAAGGTAGATGGACGGGTTGGTTTGGCTGCTATGTATGGGTCTGGGTGCTGGGCCTCATCCAAAGGGCCCTTTGGCACACCGTTTATAGTTGGGTGTTGTGCAACTGGAGCCGGTGAACACTTGATTAGAGGATTTGCTGCACGTGAATGTTGTATCTCATCATCATTGATACAATCTGGCCCTGCTTCTGCTTGTACCAAAGTTCTGCGCCAAGCGGTTCAAAGCAGCAGCGAGATGTCTCATGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGAGAGGGGAGGTATCTGCATTGGGAGCCGCTGAACTTGTTGCTGCCTATTCCTCCCCTTCATTTGGTGTTGGTTATCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGCACAATCTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGTACCTCTTGTGAAAAGAGCATGTTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGATATTGTTTTTGGCCTAACCCAAAATTTC                                               ]
[+] EMBL AK121739             [                                                                                                                             GAGAAGGGAACCAGAGCCCCCCCAACCGTAGGTTCTTCGTGGCCGTGCACGTCGGCGCCGGCTTCCACGCGCCGGCGAACGAGAAGGCGTACCGCCGAGCCATGAAGCGCGCTTGCCTCGCCGCCGCCGCAGTGCTCCGCGAGGGAAATGGCACAAGCCTTGATGCGGTTGCAGCTGCCATTCAAGTATTGGAGGATGATCCCATCACAAATGCTGGACGCGGTTCAAATTTGACTGAGAGTGGTCATGTGGAATGCGATGCAAGTATCATGGATGGTTCTACTACTACCTTTGGAGCTGTTGGAGCTGTGCAAGGTGTAAAGAATCCCATCCAAATTGCTTTGCACTTGGCAAGGGAACAGATGGTAGGACCTTCACTGCTTGGTCGGATACCCCCTATGTTTTTGGTTGGTGAAGGAGCATGCCAGTGGGCAAAATCGAAGGGGTTGAACCTACCTGAAGCCACATCAGAGGGAAATAGTTGGTTGGTGACTGAGAGTGCAAAAGCACAGTGGGGAAAATACAGATCATTGCTTGCAAGTGCCAGGGAATCAGTTAATCATAGCACTGGTTCTGGTTCAGAATCTAGTTCAGTACAGTTGGAAGCACCAGGAGCTGAAGCTGAGGATATTACTGGTGTAAAGAAGATGAAGATGATCACACGATCAATCATGGAGGATGATCAAGACTGCGTGATGGATACTGTTGGTGCTGTTTGTGTTGATGCTTATGGAAATATAGCATCAGGAGCATCCAGTGGTGGCATTGCACTAAAGGTAGATGGACGGGTTGGTTTGGCTGCTATGTATGGGTCTGGGTGCTGGGCCTCATCCAAAGGGCCCTTTGGCACACCGTTTATAGTTGGGTGTTGTGCAACTGGAGCCGGTGAACACTTGATTAGAGGATTTGCTGCACGTGAATGTTGTATCTCATCATCATTGATACAATCTGGCCCTGCTTCTGCTTGTACCAAAGTTCTGCGCCAAGCGGTTCAAAGCAGCAGCGAGATGTCTCATGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGAGAGGGGAGGTATCTGCATTGGGAGCCGCTGAACTTGTTGCTGCCTATTCCTCCCCTTCATTTGGTGTTGGTTATCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGCACAATCTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGTACCTCTTGTGAAAAGAGCATGTTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGATATTGTTTTTGGCCTAACCCAAAATTTCTGTCGTTCCTAATACTTTTTTTTTTACCGATGAAATGCTATTTTAGT]
[+] EMBL AU082467             [                                                                                                                             GAGAAGGGAACCAGAGCCCCCCCAACCGTA GTTCTTCGTGGCCGTGCACGTCGGCGCCGGCTTCCACGCGCCGGCGAACGAGAAGGCGTACCGCCGAGCCATGAAGCGCGCTTGCCTCGCCGCCGCCGCAGTGCTCCGCGAGGGAAATGGCACAAGCCTTGATGCGGTTGCAGCTGCCATTCAAGTATTGGAGGATGATCCCATCACAAATGCTGGACGCGGTTCAAATTTGACTGAGAGTGGTCATGTGGAATGCGATGCAAGTATCATGGATGGTTCTACTACTACCTTTGGAGCTGTTGGAGCTGTGCAAGGTGTAAAGAATCCCATCCAAATTGCTTTGCACTTGGCAAGGGAACAGATGGTAGGACCTTCACTGCTTGGTCGGATACCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_11341#0 AAAACTTTCTCGTCCTAATCGCGACGAGCTCGAAACGAACATGGCCGGCGGCGATGGCGG CGGCGGCGGGGGAGACGAGAGCGAGTTTGTGGGGGTAGGCGGCGGCGGAGGAGGAGGAGG AGAAGGAGAAGGGAACCAGAGCCCCCCCAACCGTAGGTTCTTCGTGGCCGTGCACGTCGG CGCCGGCTTCCACGCGCCGGCGAACGAGAAGGCGTACCGCCGAGCCATGAAGCGCGCTTG CCTCGCCGCCGCCGCAGTGCTCCGCGAGGGAAATGGCACAAGCCTTGATGCGGTTGCAGC TGCCATTCAAGTATTGGAGGATGATCCCATCACAAATGCTGGACGCGGTTCAAATTTGAC TGAGAGTGGTCATGTGGAATGCGATGCAAGTATCATGGATGGTTCTACTACTACCTTTGG AGCTGTTGGAGCTGTGCAAGGTGTAAAGAATCCCATCCAAATTGCTTTGCACTTGGCAAG GGAACAGATGGTAGGACCTTCACTGCTTGGTCGGATACCCCCTATGTTTTTGGTTGGTGA AGGAGCATGCCAGTGGGCAAAATCGAAGGGGTTGAACCTACCTGAAGCCACATCAGAGGG AAATAGTTGGTTGGTGACTGAGAGTGCAAAAGCACAGTGGGGAAAATACAGATCATTGCT TGCAAGTGCCAAGGAATCAGTTAATCATAGCACTGGTTCTGGTTCAGAATCTAGTTCAGT ACAGTTGGAAGCACCAGGAGCTGAAGCTGAGGATATTACTGGTGTAAAGAAGATGAAGAT GATCACACGATCAATCATGGAGGATGATCAAGACTGCGTGATGGATACTGTTGGTGCTGT TTGTGTTGATGCTTATGGAAATATAGCATCAGGAGCATCCAGTGGTGGCATTGCACTAAA GGTAGATGGACGGGTTGGTTTGGCTGCTATGTATGGGTCTGGGTGCTGGGCCTCATCCAA AGGGCCCTTTGGCACACCGTTTATAGTTGGGTGTTGTGCAACTGGAGCCGGTGAACACTT GATTAGAGGATTTGCTGCACGTGAATGTTGTATCTCATCATCATTGATACAATCTGGCCC TGCTTCTGCTTGTACCAAAGTTCTGCGCCAAGCGGTTCAAAGCAGCAGCGAGATGTCTCA TGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGAGAGGGGAGGTATC TGCATTGGGAGCCGCTGAACTTGTTGCTGCCTATTCCTCCCCTTCATTTGGTGTTGGTTA TCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAGCTGCACC CAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGCACAATCTGACCAATGATG TGCTGTTGTTTTAATGGCGTGTGCCACTGCAGTACCTCTTGTGAAAAGAGCATGTTGGTG GTGCATGTAGTCTGGTCTTGTACCGAAGATATTGTTTTTGGCCTAACCCAAAATTTCTGT CGTTCCTAATACTTTTTTTTTTACCGATGAAATGCTATTTTAGT



consensusID : consensus_11341#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence
                              [GGATACTGTTGGTGCTGTTTGTGTTGATGCTTATGGAAATATAGCATCAGGAGCATCCAGTGGTGGCATTGCACTAAAGGTAGATGGACGGGTTGGTTTGGCTGCTATGTATGGGTCTGGGTGCTGGGCCTCATCCAAAGGGCCCTTTGGCACACCGTTTATAGTTGGGTGTTGTGCAACTGGAGCCGGTGAACACTTGATTAGAGGATTTGCTGCACGTGAATGTTGTATCTCATCATCATTGATACAATCTGGCCCTGCTTCTGCTTGTACCAAAGTTTTGCGCCAAGCGGTTCAAAGCAGCAGCGAGATGTCTCCTGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGAGAGGGGAGGTATTTGCATTGGGAGCCGCTGAACTTGTTGCCGCCTATTCCTCCCCTTCATTTGGTGTTGGTTATCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGCACAATCTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGTACCTCTTGTGAAAAGAGCATGCTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGACATTGTTTTTGGCCTAACCCAAAATTTCTGTCGTTCAAAAAAAAAAA]

[-] EMBL CA762971             [GGATACTGTTGGTGCTGTTTGTGTTGATGCTTATGGAAATATAGCATCAGGAGCATCCAGTGGTGGCATTGCACTAAAGGTAGATGGACGGGTTGGTTTGGCTGCTATGTATGGGTCTGGGTGCTGGGCCTCATCCAAAGGGCCCTTTGGCACACCGTTTATAGTTGGGTGTTGTGCAACTGGAGCCGGTGAACACTTGATTAGAGGATTTGCTGCACGTGAATGTTGTATCTCATCATCATTGATACAATCTGGCCCTGCTTCTGCTTGTACCAAAGTTTTGCGCCAAGCGGTTCAAAGCAGCAGCGAGATGTCTCCTGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGAGAGGGGAGGTATTTGCATTGGGAGCCGCTGAACTTGTTGCCGCCTATTCCTCCCCTTCATTTGGTGTTGGTTATCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGCACAATCTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGTACCTCTTGTGAAAAGAGCATGCTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGACATTGTTTTTGGCCTAACCCAAAATTTCTGTCGTTCAAAAAAAAAAA]


>consensus_11341#1 GGATACTGTTGGTGCTGTTTGTGTTGATGCTTATGGAAATATAGCATCAGGAGCATCCAG TGGTGGCATTGCACTAAAGGTAGATGGACGGGTTGGTTTGGCTGCTATGTATGGGTCTGG GTGCTGGGCCTCATCCAAAGGGCCCTTTGGCACACCGTTTATAGTTGGGTGTTGTGCAAC TGGAGCCGGTGAACACTTGATTAGAGGATTTGCTGCACGTGAATGTTGTATCTCATCATC ATTGATACAATCTGGCCCTGCTTCTGCTTGTACCAAAGTTTTGCGCCAAGCGGTTCAAAG CAGCAGCGAGATGTCTCCTGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCT AAAGAGAGGGGAGGTATTTGCATTGGGAGCCGCTGAACTTGTTGCCGCCTATTCCTCCCC TTCATTTGGTGTTGGTTATCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAG ATCTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGC ACAATCTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGTACCTCTTGT GAAAAGAGCATGCTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGACATTGTTTTTGGC CTAACCCAAAATTTCTGTCGTTCAAAAAAAAAAA



consensusID : consensus_11341#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence
                              [GAAGAGTGGTTCTATAGATCATATAAGCAGGGTTTGCAGACCTCCTAGATGTAAGCGAATCGAGGGTGATACAGTGTATTTGTATGTAGATAAAGGGCTAATGGTGTTTGTTCCAAGCAAAAGTTGTCTTAGTTTATCCATTCTCATCTATGGCTGATTAGGATGATCCCATCACAAATGCTGGACGCGGTTCAAATTTGACTGAGAGTGGTCATGTGGAATGCGATGCAAGTATCATGGATGGTTCTACTACTACCTTTGGAGCTGTTGGAGCTGTGCAAGGTACTTGTAGTAACTTGCGATAAATCAATCCTCCTGTGTAAAAGTTACTATTTGTGTTACCACACGTCTTATTTCTTGTAGATCAGGTGTAAAGAATCCCATCCAAATTGCTTTGCACTTGGCAAGGGAACAGATGGTAGGACCTTCACTGCTTGGTCGGATACCCCCTATGTAATCACAGAACTCAAGGCTCTTCTTCACCTTTTGTTTCATCATGACCTTTTTCTTTTCCAGTAATTTATTGTCCTTGTACGTACAATTTTTCACCAGTTTCGTGCAAGTATTTGGGGAGTTTGGGCTATTTCATGTTTTCTT]

[+] EMBL CA765995             [GAAGAGTGGTTCTATAGATCATATAAGCAGGGTTTGCAGACCTCCTAGATGTAAGCGAATCGAGGGTGATACAGTGTATTTGTATGTAGATAAAGGGCTAATGGTGTTTGTTCCAAGCAAAAGTTGTCTTAGTTTATCCATTCTCATCTATGGCTGATTAGGATGATCCCATCACAAATGCTGGACGCGGTTCAAATTTGACTGAGAGTGGTCATGTGGAATGCGATGCAAGTATCATGGATGGTTCTACTACTACCTTTGGAGCTGTTGGAGCTGTGCAAGGTACTTGTAGTAACTTGCGATAAATCAATCCTCCTGTGTAAAAGTTACTATTTGTGTTACCACACGTCTTATTTCTTGTAGATCAGGTGTAAAGAATCCCATCCAAATTGCTTTGCACTTGGCAAGGGAACAGATGGTAGGACCTTCACTGCTTGGTCGGATACCCCCTATGTAATCACAGAACTCAAGGCTCTTCTTCACCTTTTGTTTCATCATGACCTTTTTCTTTTCCAGTAATTTATTGTCCTTGTACGTACAATTTTTCACCAGTTTCGTGCAAGTATTTGGGGAGTTTGGGCTATTTCATGTTTTCTT]


>consensus_11341#2 GAAGAGTGGTTCTATAGATCATATAAGCAGGGTTTGCAGACCTCCTAGATGTAAGCGAAT CGAGGGTGATACAGTGTATTTGTATGTAGATAAAGGGCTAATGGTGTTTGTTCCAAGCAA AAGTTGTCTTAGTTTATCCATTCTCATCTATGGCTGATTAGGATGATCCCATCACAAATG CTGGACGCGGTTCAAATTTGACTGAGAGTGGTCATGTGGAATGCGATGCAAGTATCATGG ATGGTTCTACTACTACCTTTGGAGCTGTTGGAGCTGTGCAAGGTACTTGTAGTAACTTGC GATAAATCAATCCTCCTGTGTAAAAGTTACTATTTGTGTTACCACACGTCTTATTTCTTG TAGATCAGGTGTAAAGAATCCCATCCAAATTGCTTTGCACTTGGCAAGGGAACAGATGGT AGGACCTTCACTGCTTGGTCGGATACCCCCTATGTAATCACAGAACTCAAGGCTCTTCTT CACCTTTTGTTTCATCATGACCTTTTTCTTTTCCAGTAATTTATTGTCCTTGTACGTACA ATTTTTCACCAGTTTCGTGCAAGTATTTGGGGAGTTTGGGCTATTTCATGTTTTCTT



consensusID : consensus_11341#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 588
fasta sequence
                              [CCATTGATACAATCTGNCCCCGCTTCTGCTTGTNCCAAAGTTCTGCGCCAAGCGGTTTCAAAGCAGCAGCGAGATGTCTCATGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGGTGGTACTTTGCTGATACGTCTCCTTGGGTTTTGCATGGATAATCTTTGATTTAACAATATAACATTCTGCAGAGAGGGGAGGTATCTGCATTGGGAGCCGCTGAACTTGTTGCTGCCTATTCCTCCCCTTCATTTGGTGTTGGTTATCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGCACAATCTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGTACCTCTTGTGAAAAGAGCATGTTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGATATTGTTTTTGGCCTAACCCAAAATTTCTGTCGTTCCTAATACTTTTTTTTTTACCGATGAAATGCTATTTTAGTGTGATTTGCCAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C97317               [CCATTGATACAATCTGNCCCCGCTTCTGCTTGTNCCAAAGTTCTGCGCCAAGCGGTTTCAAAGCAGCAGCGAGATGTCTCATGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGGTGGTACTTTGCTGATACGTCTCCTTGGGTTTTGCATGGATAATCTTTGATTTAACAATATAACATTCTGCAGAGAGGGGAGGTATCTGCATTGGGAGCCGCTGAACTTGTTGCTGCCTATTCCTCCCCTTCATTTGGTGTTGGTTATCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGCACAATCTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGTACCTCTTGTGAAAAGAGCATGTTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGATATTGTTTTTGGCCTAACCCAAAATTTCTGTCGTTCCTAATACTTTTTTTTTTACCGATGAAATGCTATTTTAGTGTGATTTGCCAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AA750287             [                                                                                                                                                                                                                                                                                                  AACAGTCCTAAGGTTGCAATGCTTAGA CTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTCGTGTCAACTTTGACGCACAATCTGACCAATGATGTGCTGTTGTTTTAATGGAGTGTGCCACTGCAGTACCTCTTGTGAAAAGAGCATGTTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGATATTGTTTTTGGCCTAACCGAAAATTTCTGTC                                                                         ]


>consensus_11341#3 CCATTGATACAATCTGNCCCCGCTTCTGCTTGTNCCAAAGTTCTGCGCCAAGCGGTTTCA AAGCAGCAGCGAGATGTCTCATGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGT TCTAAAGGTGGTACTTTGCTGATACGTCTCCTTGGGTTTTGCATGGATAATCTTTGATTT AACAATATAACATTCTGCAGAGAGGGGAGGTATCTGCATTGGGAGCCGCTGAACTTGTTG CTGCCTATTCCTCCCCTTCATTTGGTGTTGGTTATCTCGGAAGCAATATGAACAGTCCTA AGGTTGCAATGCTTAGATCTTCAAAAGCTGCACCCAATACGATAAACCATTTTGCTACTC GTGTCAACTTTGACGCACAATCTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCA CTGCAGTACCTCTTGTGAAAAGAGCATGTTGGTGGTGCATGTAGTCTGGTCTTGTACCGA AGATATTGTTTTTGGCCTAACCCAAAATTTCTGTCGTTCCTAATACTTTTTTTTTTACCG ATGAAATGCTATTTTAGTGTGATTTGCCAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11341#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence
                              [CTCTTTGACGCTCAATTTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCTTTGCAGTTCCTTTTGTGAAAAGTGCATGTTGGTGGTGCATGTAGTTTGGTCTTGTACCGAAGACTTTGTTTTTGGCCTAACCCAAAATTTTTGTTGTTCCTAAAAAAAAAAA]

[-] EMBL CF931998             [CTCTTTGACGCTCAATTTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCTTTGCAGTTCCTTTTGTGAAAAGTGCATGTTGGTGGTGCATGTAGTTTGGTCTTGTACCGAAGACTTTGTTTTTGGCCTAACCCAAAATTTTTGTTGTTCCTAAAAAAAAAAA]


>consensus_11341#4 CTCTTTGACGCTCAATTTGACCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCTTTGCA GTTCCTTTTGTGAAAAGTGCATGTTGGTGGTGCATGTAGTTTGGTCTTGTACCGAAGACT TTGTTTTTGGCCTAACCCAAAATTTTTGTTGTTCCTAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      AAAACTTTCTCGTCCTAATCGCGACGAGCTCGAAACGAACATGGCCGGCGGCGATGGCGG 60
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      CGGCGGCGGGGGAGACGAGAGCGAGTTTGTGGGGGTAGGCGGCGGCGGAGGAGGAGGAGG 120
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      AGAAGGAGAAGGGAACCAGAGCCCCCCCAACCGTAGGTTCTTCGTGGCCGTGCACGTCGG 180
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      CGCCGGCTTCCACGCGCCGGCGAACGAGAAGGCGTACCGCCGAGCCATGAAGCGCGCTTG 240
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      CCTCGCCGCCGCCGCAGTGCTCCGCGAGGGAAATGGCACAAGCCTTGATGCGGTTGCAGC 300
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      TGCCATTCAAGTATTGGAGGATGATCCCATCACAAATGCTGGACGCGGTTCAAATTTGAC 360
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      TGAGAGTGGTCATGTGGAATGCGATGCAAGTATCATGGATGGTTCTACTACTACCTTTGG 420
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      AGCTGTTGGAGCTGTGCAAGGTGTAAAGAATCCCATCCAAATTGCTTTGCACTTGGCAAG 480
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      GGAACAGATGGTAGGACCTTCACTGCTTGGTCGGATACCCCCTATGTTTTTGGTTGGTGA 540
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      AGGAGCATGCCAGTGGGCAAAATCGAAGGGGTTGAACCTACCTGAAGCCACATCAGAGGG 600
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      AAATAGTTGGTTGGTGACTGAGAGTGCAAAAGCACAGTGGGGAAAATACAGATCATTGCT 660
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      TGCAAGTGCCAAGGAATCAGTTAATCATAGCACTGGTTCTGGTTCAGAATCTAGTTCAGT 720
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------------------------
consensus_11341#0      ACAGTTGGAAGCACCAGGAGCTGAAGCTGAGGATATTACTGGTGTAAAGAAGATGAAGAT 780
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      ------------------------------------------GGATACTGTTGGTGCTGT 18
consensus_11341#0      GATCACACGATCAATCATGGAGGATGATCAAGACTGCGTGATGGATACTGTTGGTGCTGT 840
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      TTGTGTTGATGCTTATGGAAATATAGCATCAGGAGCATCCAGTGGTGGCATTGCACTAAA 78
consensus_11341#0      TTGTGTTGATGCTTATGGAAATATAGCATCAGGAGCATCCAGTGGTGGCATTGCACTAAA 900
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      ------------------------------------------------------------
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      GGTAGATGGACGGGTTGGTTTGGCTGCTATGTATGGGTCTGGGTGCTGGGCCTCATCCAA 138
consensus_11341#0      GGTAGATGGACGGGTTGGTTTGGCTGCTATGTATGGGTCTGGGTGCTGGGCCTCATCCAA 960
consensus_11341#2      ------------------------------------------------------------
                                                                                   

consensus_11341#3      -----------------------------CCATTGATACAATCTGNCCCCGCTTCTGCTT 31
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      AGGGCCCTTTGGCACACCGTTTATAGTTGGGTGTTGTGCAACTGGAGCCGGTGAACACTT 198
consensus_11341#0      AGGGCCCTTTGGCACACCGTTTATAGTTGGGTGTTGTGCAACTGGAGCCGGTGAACACTT 1020
consensus_11341#2      ---------------------------GAAGAGTGGTTCTATAGATCATATAAGCAGGGT 33
                                                                                   

consensus_11341#3      GTNCCAAAGTTCT-GCGCCAAGCGGTTTCAAAGCAGCAGCGAGATGTCTCATG-ATACAG 89
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      GATTAGAGGATTT-GCTGCACGTGAATGTTGTATCTCATC---ATCATTGATA-CAATCT 253
consensus_11341#0      GATTAGAGGATTT-GCTGCACGTGAATGTTGTATCTCATC---ATCATTGATA-CAATCT 1075
consensus_11341#2      TTGCAGACCTCCTAGATGTAAGCGAATCGAGGGTGATACAGTGTATTTGTATGTAGATAA 93
                                                                                   

consensus_11341#3      GCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGGTGGTACTTTGCTGATACGTCT 149
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      GGCCCTGCTTCTGCTTGTACCAAAGTTTTGCGCCAAGCGGTTCAAAGCAGCAGCGAGATG 313
consensus_11341#0      GGCCCTGCTTCTGCTTGTACCAAAGTTCTGCGCCAAGCGGTTCAAAGCAGCAGCGAGATG 1135
consensus_11341#2      AGGGCTAATGGTGTTTGTTCCAAGCAAAAGTTGTCTTAGTTTATCCATTCTCATCTATGG 153
                                                                                   

consensus_11341#3      CCTTGGGTTTTGCATGGATAATCTTTGATTTAACAATATAACATTCTGCAGAGAGGGGAG 209
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      TCTCCTGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGAGAGGGGAG 373
consensus_11341#0      TCTCATGATACAGGCGCTGGGTTGTTGCTAATTCAGGCTGATGTTCTAAAGAGAGGGGAG 1195
consensus_11341#2      CTGATTAGGATGATCCCATCACAAATGCTGGACGCGGTTCAAATTTGACTGAGAGTGGTC 213
                                                                                   

consensus_11341#3      GTATCTGCATTGGGAGCCGCTGAACTTGTTGCTGCCTATTCCTCCCCTTCATTTGGTGTT 269
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      GTATTTGCATTGGGAGCCGCTGAACTTGTTGCCGCCTATTCCTCCCCTTCATTTGGTGTT 433
consensus_11341#0      GTATCTGCATTGGGAGCCGCTGAACTTGTTGCTGCCTATTCCTCCCCTTCATTTGGTGTT 1255
consensus_11341#2      ATGT-------GGAATGCGATGCAAGTATCATGGATGGTTCTACTACTACCTTTGGAGCT 266
                                                                                   

consensus_11341#3      GGTTA--TCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAG 327
consensus_11341#4      ------------------------------------------------------------
consensus_11341#1      GGTTA--TCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAG 491
consensus_11341#0      GGTTA--TCTCGGAAGCAATATGAACAGTCCTAAGGTTGCAATGCTTAGATCTTCAAAAG 1313
consensus_11341#2      GTTGGAGCTGTGCAAGGTACTTGTAGTAACTTGCGATAAATCAATCCTCCTGTGTAAAAG 326
                                                                                   

consensus_11341#3      CTGCACCCAATACGATAAACCATTTTGCTACTCGTG--TCAACTTTGACGCACAATCTGA 385
consensus_11341#4      ----------------------------------------CTCTTTGACGCTCAATTTGA 20
consensus_11341#1      CTGCACCCAATACGATAAACCATTTTGCTACTCGTG--TCAACTTTGACGCACAATCTGA 549
consensus_11341#0      CTGCACCCAATACGATAAACCATTTTGCTACTCGTG--TCAACTTTGACGCACAATCTGA 1371
consensus_11341#2      TTACTATTTGTGTTACCACACGTCTTATTTCTTGTAGATCAGGTGTAAAGAATCCCATCC 386
                                                                  * * * *       *  

consensus_11341#3      CCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGT-ACCTCTTGTGAAAAGAG 444
consensus_11341#4      CCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCTTTGCAGT-TCCTTTTGTGAAAAGTG 79
consensus_11341#1      CCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGT-ACCTCTTGTGAAAAGAG 608
consensus_11341#0      CCAATGATGTGCTGTTGTTTTAATGGCGTGTGCCACTGCAGT-ACCTCTTGTGAAAAGAG 1430
consensus_11341#2      AAATTGCTTTGCACTTGGCAAGGGAACAGATGGTAGGACCTTCACTGCTTGGTCGGATAC 446
                         * ** * ***  ***         *   **      *  *  *   ***     *   

consensus_11341#3      CATGTTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGATATTGTTTTTGGCCTAACCCA 504
consensus_11341#4      CATGTTGGTGGTGCATGTAGTTTGGTCTTGTACCGAAGACTTTGTTTTTGGCCTAACCCA 139
consensus_11341#1      CATGCTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGACATTGTTTTTGGCCTAACCCA 668
consensus_11341#0      CATGTTGGTGGTGCATGTAGTCTGGTCTTGTACCGAAGATATTGTTTTTGGCCTAACCCA 1490
consensus_11341#2      CCCCTATGTAAT-CACAGAACTCAAGGCTCTTCTTCACCTTTTGTTTC-ATCATGACCTT 504
                       *      **  * **   *         * * *   *    ******    * * ***  

consensus_11341#3      AAATTTCTGTCGTTCCTAATACTTTTTTTTTTACCGATGAAATGCTATTTTAGTGTGATT 564
consensus_11341#4      AAATTTTTGTTGTTCCTAAAAAAAAAAA-------------------------------- 167
consensus_11341#1      AAATTTCTGTCGTTCAAAAAAAAAAA---------------------------------- 694
consensus_11341#0      AAATTTCTGTCGTTCCTAATACTTTTTTTTTTACCGATGAAATGCTATTTTAGT------ 1544
consensus_11341#2      TTTCTTTTCCAGTAATTTATTGTCCTTGTACGTACAATTTTTCACCAGTTTCGTGCAAGT 564
                           ** *   **     *                                         

consensus_11341#3      TGCCAAAAAAAAAAAAAAAAAAAA--------- 588
consensus_11341#4      ---------------------------------
consensus_11341#1      ---------------------------------
consensus_11341#0      ---------------------------------
consensus_11341#2      ATTTGGGGAGTTTGGGCTATTTCATGTTTTCTT 597
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)