These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 3430 fasta sequence [CACGCACGCAGAGTCGAGACGCGCACGCCACCCTGTCGCTCTCTCTCTCTCGCTCTCGCCCTCGCCTCTCCCCTCCCCATCACCACCCAAAACCCTAGTTACCCCCACCCTCTCAAAACCCTAACCCCACCTCACCACCCTCCCCGGCGGCGGCGGCCCTTGTGGCTGTGCACACATCACTCCACCGGATAAGCTCTAGCTATCTATCATCCAAAGCAGCTTACTAGTCTGTGCTCTCTCTGTGTCGGAAGGCGGCGGCGGCGGCGCGGCGGCTGGTGGTGGTGGGCGGGGGAGGCGGCGGTAGAGCGGTGGTATCTGGGCGTTTTGTGGCGGGGGCGGCTCGGGCGTCGGCGATGGAGGAGCCGAATGTGGGCGGAGGGGCGGCGGCGGTGGTGGCGCCTGAGGGGGCGGATCCGGCTGGCGGCGGCGGCGGTGGACCGGGCGCCCCCGCGTCTCCCTGGAGGAAGACCACGCCGCCGCCTGTGGCGGGTGAGGCGGTGGTCATGGGGGCCAAGTCGTGGCCCGCGCTGGAGGAGGCTAGGCAGAAGGTCGCCGCCGCGGAGGCCGCGGCGAGGCGCGGGGGCGGNCCAATGGCTGGCGGCGGTGGCGAACGCAGCGAAGGGGGTGCGCAGGCGCAGCAGCCGGTCCCCTCCCCCGCCACAGTCGCAGGCACCTAATCGCACGCACAAGTTTGGTGCCCATGGAAATCCCGACAAGAATGATCAAGCATACCATAGAAGTGGCCCCAAGAGACGTTCTCCTGCTGCGAATGGGACTCCATCTTATCCTGCCGCGATGCCATATCACCAACATCCAGGGCAACCTTTTTACTACCCTGTTATTCCCAGTCCAGTGATACTACATGAATATCCTTACCCACCTTTTGCTGTTCCGGTTCCAAGTCATGACCCGCATGCTGGAAAATCTGGATATGAGAATTCTATGCCTGCTTATGTTCCAGTAGATCAAGCTGGTGGCAATGAAGGTAACCGGCCAGTGCCTCCACAACCAAGGGGAGACCTTCATGCTTGGAGGCCTCCTGTTGGTGCAAGACCCCAGCCTGGCCTTGAAGGCCGTGGCCATTTTAATCACAATTGGCAGAATCCCCAGATGTTCGGTACCAGGGAAAACACAAGTGTACCACAAGGTGCTGGGCCAAGAGCTTTCATGAGACCAATGGCACATCTGCCTCACACTCTGGGATACATAAATGGTCCACCATACCCTGGGCCAATGCCTCCCATGTATTATTACATGCCTGCTGTACCCATGGAGCCGATGAGAGGTCCACCACGTTTTGTCCAAAACCAACCACCTCCTCATCCTGTTTTATCTCCTGAATTAAGAGCTAAAATACTGACTCAAGTGGAGTACTATTTTAGTGATAGTAATCTGGATCATGATAATTTTCTTAAATCTTTAATGGACGAACATGGCTGGGTTCCAATTTCCAAAGTTGCAGACTTCAATCGGCTTAAGAAAATGACCACGGATATACAACTGATTGTAGAAGCATTGGCAGACTCAAGTCTTTTAGAAGTTCAGGATGGTAATATGAGGCGGCGTTCTGACTGGTCAAAGTGGGTTTCCTTGTCTGGGACATCTCTTCCGAGTCCATCTTCAACCAGTATGGATAACACTACTGGTGAATGTAATAAGGATGCTTATTCTGAAGATGAAAAGAAGCCTCATCCTCGCAGCGTAGATTGTGTTGGTATGGGGGCTTCTGATGAGCCATCACATGATACACTCAGTAGTTCAGTCACTTCACTGAATAAGGGCTTATCAAACATTAGTATTGATAATAAGCCTAAGAGCATTTCTGCATGCTCTCTGAACTCACAAAAACATGAAGCTGCTTTTAGGACTGGTGATGTTAAAGTTCAGAAAGTAAACACAAAGATCAAAGTGCCTGATTCTCAGAGGGAAAGAGGTTTCTGTAATGATTTCATAAGTGACTCTCCTAGCTTCAGCGGCGATCAAAGCACATTCTTGCTTGATGAGGAATTAGAATTGGAGCATGCAGAGCTTTCACATGATCTCTATTCGCACAAAAGGGTCGATGATGAGGAAGATGATTTTTATGTTGATGACCAAGATGTGAACAGGCTAATAATCGTTACGCAGGACGGACCTCAAGCATTTTCAAAAGAGGAAATATCAAGAATCAATGAGGGGTTATATTACTATGAGAATCACGCTTATAATCAAAGAAGTTCCCAAGCTGGCACCATAGATATTGATTCTAAACCAGCTGGTGGTTCAAAGGGGAATCCCATTAATATTGTAAACAATGGAATTGAAGATTCTGGACAGCCTATCCCACGAAGGAGGCACAACAGAGGCAATAGAAAAGCACAGTCCTCTCATAAGCAGAGGTTCTTTCCTGGTAACTTTGCGAATAACACCAATAATAGATCTCACTATGGCGGTGTATCAGAGAGCCCCCCAAGCAATTCAATTGGATATTTCTACGGATCTACTCCAGAAAACCACAGCTATAGAAGTTCAAGGTTGAGCTCATCTCCTCATGGAATCCCTACTGGTAGCTCGCCTGTTGGTTCTGTGCCCAAATCTTTCCCACCATTTCAACACCCAAGTCATCAGCTTTTAGAGAAAAATAAATTCCAGCAGCAAAGGTACAATAAGTTCAAAAATCGATGCATCGCTGAACGCAAGAAGTTAGGGATCGGTTGCAGTGAGGAAATGAATTCGTTATATCGTTTTTGGTCGTATTATCTAAGAGATAATTTTAATGATGATATGTACAAACATTTTAAGAAGTTTGCACTAGATGACGCGGCAGCAAATTACAGATATGGACTTGAATGTCTCTTCAGATTTTATAGTTATGGTTTGGAGAAAAACTTCCAACGCAATGTGTATGAAGATTTCGAGCAGCTGACACTCGAATTCCATCACAAGGGTGATCTTTATGGACTCGAAAAATACTGGGCTTTCCACCATTTCCGAAATCAAGATAGCAGCCCCATTATCAAGCATCCAGAATTGGAGAGGCTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCACGGAAGGCAGCAGAGAAAGAAACTGGCAGCAGTACTGCTGCCGCCGCAGGCCATAACAAGGCTGATGCGAAGTAGGTCCTAGCATGGCATGAAATT-TTGGTGGTCATCCCACAAAAAGGAGAAAGTAGCAAAACCGTTTTTGTTTGGTGAAAAACTTAAGGATTTGAGTAGACACCTGTGCAGATTTTGTTCTCCCCTGCCGACGATACTTGTGTGGCCTTGTCCAGGAAATTTTCCTCTCGCATTTTTTCCCATTACATTCCTGGCGCAGCGCCCTGTGGGATTTGTACATAAAGATAATAATTACTTGTTGATTAAATGGACAAATAATAGAGCCTGGAGTTAAAATGACACGGCATTGTCGTCTTGC] [+] EMBL AK121684 [CACGCACGCAGAGTCGAGACGCGCACGCCACCCTGTCGCTCTCTCTCTCTCGCTCTCGCCCTCGCCTCTCCCCTCCCCATCACCACCCAAAACCCTAGTTACCCCCACCCTCTCAAAACCCTAACCCCACCTCACCACCCTCCCCGGCGGCGGCGGCCCTTGTGGCTGTGCACACATCACTCCACCGGATAAGCTCTAGCTATCTATCATCCAAAGCAGCTTACTAGTCTGTGCTCTCTCTGTGTCGGAAGGCGGCGGCGGCGGCGCGGCGGCTGGTGGTGGTGGGCGGGGGAGGCGGCGGTAGAGCGGTGGTATCTGGGCGTTTTGTGGCGGGGGCGGCTCGGGCGTCGGCGATGGAGGAGCCGAATGTGGGCGGAGGGGCGGCGGCGGTGGTGGCGCCTGAGGGGGCGGATCCGGCTGGCGGCGGCGGCGGTGGACCGGGCGCCCCCGCGTCTCCCTGGAGGAAGACCACGCCGCCGCCTGTGGCGGGTGAGGCGGTGGTCATGGGGGCCAAGTCGTGGCCCGCGCTGGAGGAGGCTAGGCAGAAGGTCGCCGCCGCGGAGGCCGCGGCGAGGCGCGGGGGCGGNCCAATGGCTGGCGGCGGTGGCGAACGCAGCGAAGGGGGTGCGCAGGCGCAGCAGCCGGTCCCCTCCCCCGCCACAGTCGCAGGCACCTAATCGCACGCACAAGTTTGGTGCCCATGGAAATCCCGACAAGAATGATCAAGCATACCATAGAAGTGGCCCCAAGAGACGTTCTCCTGCTGCGAATGGGACTCCATCTTATCCTGCCGCGATGCCATATCACCAACATCCAGGGCAACCTTTTTACTACCCTGTTATTCCCAGTCCAGTGATACTACATGAATATCCTTACCCACCTTTTGCTGTTCCGGTTCCAAGTCATGACCCGCATGCTGGAAAATCTGGATATGAGAATTCTATGCCTGCTTATGTTCCAGTAGATCAAGCTGGTGGCAATGAAGGTAACCGGCCAGTGCCTCCACAACCAAGGGGAGACCTTCATGCTTGGAGGCCTCCTGTTGGTGCAAGACCCCAGCCTGGCCTTGAAGGCCGTGGCCATTTTAATCACAATTGGCAGAATCCCCAGATGTTCGGTACCAGGGAAAACACAAGTGTACCACAAGGTGCTGGGCCAAGAGCTTTCATGAGACCAATGGCACATCTGCCTCACACTCTGGGATACATAAATGGTCCACCATACCCTGGGCCAATGCCTCCCATGTATTATTACATGCCTGCTGTACCCATGGAGCCGATGAGAGGTCCACCACGTTTTGTCCAAAACCAACCACCTCCTCATCCTGTTTTATCTCCTGAATTAAGAGCTAAAATACTGACTCAAGTGGAGTACTATTTTAGTGATAGTAATCTGGATCATGATAATTTTCTTAAATCTTTAATGGACGAACATGGCTGGGTTCCAATTTCCAAAGTTGCAGACTTCAATCGGCTTAAGAAAATGACCACGGATATACAACTGATTGTAGAAGCATTGGCAGACTCAAGTCTTTTAGAAGTTCAGGATGGTAATATGAGGCGGCGTTCTGACTGGTCAAAGTGGGTTTCCTTGTCTGGGACATCTCTTCCGAGTCCATCTTCAACCAGTATGGATAACACTACTGGTGAATGTAATAAGGATGCTTATTCTGAAGATGAAAAGAAGCCTCATCCTCGCAGCGTAGATTGTGTTGGTATGGGGGCTTCTGATGAGCCATCACATGATACACTCAGTAGTTCAGTCACTTCACTGAATAAGGGCTTATCAAACATTAGTATTGATAATAAGCCTAAGAGCATTTCTGCATGCTCTCTGAACTCACAAAAACATGAAGCTGCTTTTAGGACTGGTGATGTTAAAGTTCAGAAAGTAAACACAAAGATCAAAGTGCCTGATTCTCAGAGGGAAAGAGGTTTCTGTAATGATTTCATAAGTGACTCTCCTAGCTTCAGCGGCGATCAAAGCACATTCTTGCTTGATGAGGAATTAGAATTGGAGCATGCAGAGCTTTCACATGATCTCTATTCGCACAAAAGGGTCGATGATGAGGAAGATGATTTTTATGTTGATGACCAAGATGTGAACAGGCTAATAATCGTTACGCAGGACGGACCTCAAGCATTTTCAAAAGAGGAAATATCAAGAATCAATGAGGGGTTATATTACTATGAGAATCACGCTTATAATCAAAGAAGTTCCCAAGCTGGCACCATAGATATTGATTCTAAACCAGCTGGTGGTTCAAAGGGGAATCCCATTAATATTGTAAACAATGGAATTGAAGATTCTGGACAGCCTATCCCACGAAGGAGGCACAACAGAGGCAATAGAAAAGCACAGTCCTCTCATAAGCAGAGGTTCTTTCCTGGTAACTTTGCGAATAACACCAATAATAGATCTCACTATGGCGGTGTATCAGAGAGCCCCCCAAGCAATTCAATTGGATATTTCTACGGATCTACTCCAGAAAACCACAGCTATAGAAGTTCAAGGTTGAGCTCATCTCCTCATGGAATCCCTACTGGTAGCTCGCCTGTTGGTTCTGTGCCCAAATCTTTCCCACCATTTCAACACCCAAGTCATCAGCTTTTAGAGAAAAATAAATTCCAGCAGCAAAGGTACAATAAGTTCAAAAATCGATGCATCGCTGAACGCAAGAAGTTAGGGATCGGTTGCAGTGAGGAAATGAATTCGTTATATCGTTTTTGGTCGTATTATCTAAGAGATAATTTTAATGATGATATGTACAAACATTTTAAGAAGTTTGCACTAGATGACGCGGCAGCAAATTACAGATATGGACTTGAATGTCTCTTCAGATTTTATAGTTATGGTTTGGAGAAAAACTTCCAACGCAATGTGTATGAAGATTTCGAGCAGCTGACACTCGAATTCCATCACAAGGGTGATCTTTATGGACTCGAAAAATACTGGGCTTTCCACCATTTCCGAAATCAAGATAGCAGCCCCATTATCAAGCATCCAGAATTGGAGAGGCTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCACGGAAGGCAGCAGAGAAAGAAACTGGCAGCAGTACTGCTGCCGCCGCAGGCCATAACAAGGCTGATGCGAAGTAGGTCCTAGCATGGCATGAAATT TTGGTGGTCATCCCACAAAAAGGAGAAAGTAGCAAAACCGTTTTTGTTTGGTGAAAAACTTAAGGATTTGAGTAGACACCTGTGCAGATTTTGTTCTCCCCTGCCGACGATACTTGTGTGGCCTTGTCCAGGAAATTTTCCTCTCGCATTTTTTCCCATTACATTCCTGGCGCAGCGCCCTGTGGGATTTGTACATAAAGATAATAATTACTTGTTGATTAAATGGACAAATAATAGAGCCTGGAGTTAAAATGACACGGCATTGTCGTCTTG ] [+] EMBL CB000815 [ TGAAGATTCTGGACAGCCTATCCCACGAAGGAGGCACAACAGAGGCAATAGAAAAGCACAGTCCTCTCATAAGCAGAGGTTCTTTCCTGGTAACTTTGCGAATAACACCAATAATAGATCTCACTATGGCGGTGTATCAGAGAGCCCCCCAAGCAATTCAATTGGATATTTCTACGGATCTACTCCAGAAAACCACAGCTATAGAAGTTCAAGGTTGAGCTCATCTCCTCATGGAATCCCTACTGGTAGCTCGCCTGTTGGTTCTGTGCCCAAATCTTTCCCACCATTTCAACACCCAAGTCATCAGCTTTTAGAGAAAAATAAATTCCAGCAGCAAAGGTACAATAAGTTCAAAAATCGATGCATCGCTGAA ] [+] EMBL CB001065 [ AGCACAGTCCTCTCATAAGCAGAGGTTCTTTCCTGGTAACTTTGCGAATAACACCAATAATAGATCTCACTATGGCGGTGTATCAGAGAGCCCCCCAAGCAATTCAATTGGATATTTCTACGGATCTACTCCAGAAAACCACAGCTATAGAAGTTCAAGGTTGAGCTCATCTCCTCATGGAATCCCTACTGTTAGCTCGCCTGTTGGTTCTGTGCCCAAATCTTTCCCACCATTTCAACACCCAAGTCATCAGCTTTTAGAGAAAAATAAATTCCAGCAGCAAAGGTACAATAAGTTCAAAAATCGATGCATCGCTGAACGCAAGAAGTTAGGGATCGGTTGCAGTGAGGAAATGAATTCGTTATATCGTTTTTGGTCGTATTATCTAAGAGATAATTTTAATGATGATATGTACAAACATTTTAAGAAGTTTGCACTAGATGACGCGGCAGCAAATTACAGATATGGACTTGAATGTCTCTTCAGATTTTATAGTTATGGTTTGGAGAAAAACTTCCAACGCAATG ] [+] EMBL CF282204 [ TTGGTCGTATTATCTAAGAGATAATTTTAATGATGATATGTACAAACATTTTAAGAAGTTTGCACTAGATGACGCGGCAGCAAATTACAGATATGGACTTGAATGTCTCTTCAGATTTTATAGTTATGGTTTGGAGAAAAACTTCCAACGCAATGTGTATGAAGATTTCGAGCAGCTGACACTCGAATTCCATCACAAGGGTGATCTTTATGGACTCGAAAAATACTGGGCTTTCCACCATTTCCGAAATCAAGATAGCAGCCCCATTATCAAGCATCCAGAATTGGAGAGGCTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCACGGAAGGCAGCAGAGAAAGAAACTGGCAGCAGTACTGCTGCCGCCGCAGGCCATAACAAGGCTGATGCGAAGTAGGTCCTAGCATGGCATGAAATTNTTGGTGGTCATCCCACAAAAAGGAGAAAGTAGCAAAACCGTTTTTGTTTGGTGAAAAACTTAAGGATTTGAGTAGACACCTGTGCAGATTTTGTTCTCCCCTGCCGACGATAC ] [+] EMBL CB097159 [ ggggggGGACTTGAATGTCTCTTCAGATTTTATAGTTATGGTTTGGAGAAAAACTTCCAACGCAATGTGTATGAAGATTTCGAGCAGCTGACACTCGAATTCCATCACAAGGGTGATCTTTATGGACTCGAAAAATACTGGGCTTTCCACCATTTCCGAAATCAAGATAGCAGCCCCATTATCAAGCATCCAGAATTGGAGAGGCTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCACGGAAGGCAGCAGAGAAAGAAACTGGCAGCAGTACTGCTGCCGCCGCAGGCCATAACAAGGCTGATGCGAAGTAGGTCCTAGCATGGCATGAAATT TTGGTGGTCAACCCACAAAAAGGAGAAAGTAGCAAAACCGTTTTTGTTTGGTGAAAAACTTAAGGATTTGAGTAGACACCTGTGCAGATTTTGTTCTCCCCTGCCGACGATACTTGTGTGGCCCTGTCCAGGAAATTTTCCTCTCGCATTTTTTCCCATTACATTCCTGGCGCAGCGCCCTGTGGGATTTGTACATAAAGATAATAATTACTTGTTGATTAAATGGACAAATAATAGAGCCTGGAGTTAAAATGACACGGCATTGTCGTCTTGC] [-] EMBL CB638533 [ TGTGTATGAAGATTTCGAGCAGCTGACACTCGAATTCCATCACAAGGGTGATCTTTATGGACTCGAAAAATACTGGGCTTTCCACCATTTCCGAAATCAAGATAGCAGCCCCATTATCAAGCATCCAGAATTGGAGAGGCTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCACGGAAGGCAGCAGAGAAAGAAACTGGCAGCAGTACTGCTGCCGCCGCAGGCCATAACAAGGTTGATGCGAAGTAGGTCCTAGCATGGCATGAAATT TTGGTGGTCATCCCACAAAAAGGAGAAAGTAGCAAACCCGTTTTTGTTTGGTGAAAAACTTAAGGATTTGAGTAGACACCTGTGCAGATTTTGTTCTCCCCTGCCGACGATACTTGTGTGGCCTTGTCCAGGAAATTTTCCTCTCGCATTTTTTCCCATTACATTCCTGGCGCAGCGCCCTGTGGGATTTGTACATAAAGATAATAATTACTTGTTGATTAAATGGACAAATAATAGAGCCTGGAGTTAAAATGA ] consensusID : consensus_11342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 977 fasta sequence [AAGAAGTTAGGGATTGGTTGCAGTGAGGAAATGAATTCGTTATATCGTTTTTGGTCGTATTATCTGAGAGATAATTTTAATGATGATATGTACAAACATTTTAAGAAGTTTGCACTAGATGACGCGGCAGCAAATTACAGATATGGACTTGAATGTCTCTTCAGATTTTATAGTTATGGTTTGGAGAAAAACTTCCAACGCAATGTGTATGAAGATTTCGAGCAGCTGACACTCGAATTCCATCACAAGGGTGATCTTTATGGACTCGAAAAATACTGGGCTTTCCACCATTTCCGAAATCAAGATAGCAGCCCCATTATCAAGCATCCAGAATTGGAGAGGCTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCACGGAAGGCAGCAGAGAAAGAAACTGGCAGCAGTAGTGCTGCCGCCGCAGGCCATAACAAGGCTCATGCGAAGTAGGTCCTAGCATGGCATGAAATTTTGGTGGTCATCCCACAAAAAGGAGAAAGTAGCAAAACCGTTTTTGTTTGGTGAAAACTTAAGGTTTTGAGTAGACACCTGTGCAGATTTTGTTCTCCCCTGCCGACGATACTTGTGTGGACTTGTCCAGGAAATGTGTCCTTTGCATTGTTGGCCCTTACATTGCTGGCGCAACGCCCTGTGGGATTTGTTCATAAAGATATTATTGCCTGGTGGTTGAATGGACAAATTATCGACCCTCGGGTGGATTCGCACAAAATACAAGACTAGTTTACGTTAATGTTGCCGTCATGCTTGTTCTGTGTCGTCGTTGGCGCTCGCCTTCCCCCTACNCCATCAAAATGTTCTCCTATCTCGTTTAATGTGACTGGTATCGAACTACCTACGGTGTGCTTCTTTTAGAGCTTCTCGAGTTATAGTATTTTACGTATTGAAAATGTCCGTCTCCCCTACTATTTTATGTGCGCGTGATAGTGGCTGTTTTATTCTTTGTCTGC] [+] EMBL BE039722 [AAGAAGTTAGGGATTGGTTGCAGTGAGGAAATGAATTCGTTATATCGTTTTTGGTCGTATTATCTGAGAGATAATTTTAATGATGATATGTACAAACATTTTAAGAAGTTTGCACTAGATGACGCGGCAGCAAATTACAGATATGGACTTGAATGTCTCTTCAGATTTTATAGTTATGGTTTGGAGAAAAACTTCCAACGCAATGTGTATGAAGATTTCGAGCAGCTGACACTCGAATTCCATCACAAGGGTGATCTTTATGGACTCGAAAAATACTGGGCTTTCCACCATTTCCGAAATCAAGATAGCAGCCCCATTATCAAGCATCCAGAATTGGAGAGGCTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCACGGAAGGCAGCAGAGAAAGAAACTGGCAGCAGTAGTGCTGCCGCCGCAGGCCATAACAAGGCTCATGCGAAGTAGGTCCTAGCATGGCATGAAATTTTGGTGGTCATCCCACAAAAAGGAGAAAGTAGCAAAACCGTTTTTGTTTGGTGAAAACTTAAGGTTTTGAGTAGACACCTGTGCAGATTTTGTTCTCCCCTGCCGACGATACTTGTGTGGACTTGTCCAGGAAATGTGTCCTTTGCATTGTTGGCCCTTACATTGCTGGCGCAACGCCCTGTGGGATTTGTTCATAAAGATATTATTGCCTGGTGGTTGAATGGACAAATTATCGACCCTCGGGTGGATTCGCACAAAATACAAGACTAGTTTACGTTAATGTTGCCGTCATGCTTGTTCTGTGTCGTCGTTGGCGCTCGCCTTCCCCCTACNCCATCAAAATGTTCTCCTATCTCGTTTAATGTGACTGGTATCGAACTACCTACGGTGTGCTTCTTTTAGAGCTTCTCGAGTTATAGTATTTTACGTATTGAAAATGTCCGTCTCCCCTACTATTTTATGTGCGCGTGATAGTGGCTGTTTTATTCTTTGTCTGC] consensusID : consensus_11342#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [CCATTTCCGAAATCAAGAAAGCAGCCCCCTTATCAAGCATCCAGAATTGGAGAGGGTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCCCGGAAGGCACCAAAAAAAAAAACTGGCACCAGTATTGTTTCCCCCCGCAGGCCATAACAAGGGTTATGGGAAGTAGGTCCTAGCATGGCATGAAATTTTGGGGGTCTTCCCCCAAAAAGGAGAAAGTAGCAAACCCGTTTTTGTTTGGTGAAAAACTTAAGGATTTGAGTAAACCCCTGTGCAGATTTTGTTTTCCCCCCCCGACAAAAATTGTGTGGCCTTGTCCAGGAAATTTTCCTTTTGCATTTTTTCCCATTACATTTCTGGGGCAGGGCCCTGTGGGATTTGTACAAAAAAAAAAAAATTACTTGTTGATTAAAAGGGCAAAAAATAAAGCCTGGGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF282203 [CCATTTCCGAAATCAAGAAAGCAGCCCCCTTATCAAGCATCCAGAATTGGAGAGGGTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCCCGGAAGGCACCAAAAAAAAAAACTGGCACCAGTATTGTTTCCCCCCGCAGGCCATAACAAGGGTTATGGGAAGTAGGTCCTAGCATGGCATGAAATTTTGGGGGTCTTCCCCCAAAAAGGAGAAAGTAGCAAACCCGTTTTTGTTTGGTGAAAAACTTAAGGATTTGAGTAAACCCCTGTGCAGATTTTGTTTTCCCCCCCCGACAAAAATTGTGTGGCCTTGTCCAGGAAATTTTCCTTTTGCATTTTTTCCCATTACATTTCTGGGGCAGGGCCCTGTGGGATTTGTACAAAAAAAAAAAAATTACTTGTTGATTAAAAGGGCAAAAAATAAAGCCTGGGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11342#0 CACGCACGCAGAGTCGAGACGCGCACGCCACCCTGTCGCTCTCTCTCTCTCGCTCTCGCC 60 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CTCGCCTCTCCCCTCCCCATCACCACCCAAAACCCTAGTTACCCCCACCCTCTCAAAACC 120 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CTAACCCCACCTCACCACCCTCCCCGGCGGCGGCGGCCCTTGTGGCTGTGCACACATCAC 180 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 TCCACCGGATAAGCTCTAGCTATCTATCATCCAAAGCAGCTTACTAGTCTGTGCTCTCTC 240 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 TGTGTCGGAAGGCGGCGGCGGCGGCGCGGCGGCTGGTGGTGGTGGGCGGGGGAGGCGGCG 300 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GTAGAGCGGTGGTATCTGGGCGTTTTGTGGCGGGGGCGGCTCGGGCGTCGGCGATGGAGG 360 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 AGCCGAATGTGGGCGGAGGGGCGGCGGCGGTGGTGGCGCCTGAGGGGGCGGATCCGGCTG 420 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GCGGCGGCGGCGGTGGACCGGGCGCCCCCGCGTCTCCCTGGAGGAAGACCACGCCGCCGC 480 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CTGTGGCGGGTGAGGCGGTGGTCATGGGGGCCAAGTCGTGGCCCGCGCTGGAGGAGGCTA 540 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GGCAGAAGGTCGCCGCCGCGGAGGCCGCGGCGAGGCGCGGGGGCGGNCCAATGGCTGGCG 600 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GCGGTGGCGAACGCAGCGAAGGGGGTGCGCAGGCGCAGCAGCCGGTCCCCTCCCCCGCCA 660 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CAGTCGCAGGCACCTAATCGCACGCACAAGTTTGGTGCCCATGGAAATCCCGACAAGAAT 720 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GATCAAGCATACCATAGAAGTGGCCCCAAGAGACGTTCTCCTGCTGCGAATGGGACTCCA 780 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 TCTTATCCTGCCGCGATGCCATATCACCAACATCCAGGGCAACCTTTTTACTACCCTGTT 840 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 ATTCCCAGTCCAGTGATACTACATGAATATCCTTACCCACCTTTTGCTGTTCCGGTTCCA 900 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 AGTCATGACCCGCATGCTGGAAAATCTGGATATGAGAATTCTATGCCTGCTTATGTTCCA 960 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GTAGATCAAGCTGGTGGCAATGAAGGTAACCGGCCAGTGCCTCCACAACCAAGGGGAGAC 1020 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CTTCATGCTTGGAGGCCTCCTGTTGGTGCAAGACCCCAGCCTGGCCTTGAAGGCCGTGGC 1080 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CATTTTAATCACAATTGGCAGAATCCCCAGATGTTCGGTACCAGGGAAAACACAAGTGTA 1140 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CCACAAGGTGCTGGGCCAAGAGCTTTCATGAGACCAATGGCACATCTGCCTCACACTCTG 1200 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GGATACATAAATGGTCCACCATACCCTGGGCCAATGCCTCCCATGTATTATTACATGCCT 1260 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GCTGTACCCATGGAGCCGATGAGAGGTCCACCACGTTTTGTCCAAAACCAACCACCTCCT 1320 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CATCCTGTTTTATCTCCTGAATTAAGAGCTAAAATACTGACTCAAGTGGAGTACTATTTT 1380 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 AGTGATAGTAATCTGGATCATGATAATTTTCTTAAATCTTTAATGGACGAACATGGCTGG 1440 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GTTCCAATTTCCAAAGTTGCAGACTTCAATCGGCTTAAGAAAATGACCACGGATATACAA 1500 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CTGATTGTAGAAGCATTGGCAGACTCAAGTCTTTTAGAAGTTCAGGATGGTAATATGAGG 1560 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CGGCGTTCTGACTGGTCAAAGTGGGTTTCCTTGTCTGGGACATCTCTTCCGAGTCCATCT 1620 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 TCAACCAGTATGGATAACACTACTGGTGAATGTAATAAGGATGCTTATTCTGAAGATGAA 1680 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 AAGAAGCCTCATCCTCGCAGCGTAGATTGTGTTGGTATGGGGGCTTCTGATGAGCCATCA 1740 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CATGATACACTCAGTAGTTCAGTCACTTCACTGAATAAGGGCTTATCAAACATTAGTATT 1800 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GATAATAAGCCTAAGAGCATTTCTGCATGCTCTCTGAACTCACAAAAACATGAAGCTGCT 1860 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 TTTAGGACTGGTGATGTTAAAGTTCAGAAAGTAAACACAAAGATCAAAGTGCCTGATTCT 1920 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CAGAGGGAAAGAGGTTTCTGTAATGATTTCATAAGTGACTCTCCTAGCTTCAGCGGCGAT 1980 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CAAAGCACATTCTTGCTTGATGAGGAATTAGAATTGGAGCATGCAGAGCTTTCACATGAT 2040 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CTCTATTCGCACAAAAGGGTCGATGATGAGGAAGATGATTTTTATGTTGATGACCAAGAT 2100 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 GTGAACAGGCTAATAATCGTTACGCAGGACGGACCTCAAGCATTTTCAAAAGAGGAAATA 2160 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 TCAAGAATCAATGAGGGGTTATATTACTATGAGAATCACGCTTATAATCAAAGAAGTTCC 2220 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CAAGCTGGCACCATAGATATTGATTCTAAACCAGCTGGTGGTTCAAAGGGGAATCCCATT 2280 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 AATATTGTAAACAATGGAATTGAAGATTCTGGACAGCCTATCCCACGAAGGAGGCACAAC 2340 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 AGAGGCAATAGAAAAGCACAGTCCTCTCATAAGCAGAGGTTCTTTCCTGGTAACTTTGCG 2400 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 AATAACACCAATAATAGATCTCACTATGGCGGTGTATCAGAGAGCCCCCCAAGCAATTCA 2460 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 ATTGGATATTTCTACGGATCTACTCCAGAAAACCACAGCTATAGAAGTTCAAGGTTGAGC 2520 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 TCATCTCCTCATGGAATCCCTACTGGTAGCTCGCCTGTTGGTTCTGTGCCCAAATCTTTC 2580 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 CCACCATTTCAACACCCAAGTCATCAGCTTTTAGAGAAAAATAAATTCCAGCAGCAAAGG 2640 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------------------------------ consensus_11342#0 TACAATAAGTTCAAAAATCGATGCATCGCTGAACGCAAGAAGTTAGGGATCGGTTGCAGT 2700 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ------------------------------------AAGAAGTTAGGGATTGGTTGCAGT 24 consensus_11342#0 GAGGAAATGAATTCGTTATATCGTTTTTGGTCGTATTATCTAAGAGATAATTTTAATGAT 2760 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 GAGGAAATGAATTCGTTATATCGTTTTTGGTCGTATTATCTGAGAGATAATTTTAATGAT 84 consensus_11342#0 GATATGTACAAACATTTTAAGAAGTTTGCACTAGATGACGCGGCAGCAAATTACAGATAT 2820 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 GATATGTACAAACATTTTAAGAAGTTTGCACTAGATGACGCGGCAGCAAATTACAGATAT 144 consensus_11342#0 GGACTTGAATGTCTCTTCAGATTTTATAGTTATGGTTTGGAGAAAAACTTCCAACGCAAT 2880 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 GGACTTGAATGTCTCTTCAGATTTTATAGTTATGGTTTGGAGAAAAACTTCCAACGCAAT 204 consensus_11342#0 GTGTATGAAGATTTCGAGCAGCTGACACTCGAATTCCATCACAAGGGTGATCTTTATGGA 2940 consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 GTGTATGAAGATTTCGAGCAGCTGACACTCGAATTCCATCACAAGGGTGATCTTTATGGA 264 consensus_11342#0 CTCGAAAAATACTGGGCTTTCCACCATTTCCGAAATCAAGATAGCAGCCCCATTATCAAG 3000 consensus_11342#2 -----------------------CCATTTCCGAAATCAAGAAAGCAGCCCCCTTATCAAG 37 consensus_11342#1 CTCGAAAAATACTGGGCTTTCCACCATTTCCGAAATCAAGATAGCAGCCCCATTATCAAG 324 ****************** ********* ******** consensus_11342#0 CATCCAGAATTGGAGAGGCTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCA 3060 consensus_11342#2 CATCCAGAATTGGAGAGGGTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCC 97 consensus_11342#1 CATCCAGAATTGGAGAGGCTCCTAAAGGAGGAGTTCCGAACCATCGAGGATTTCAAGGCA 384 ****************** **************************************** consensus_11342#0 CGGAAGGCAGCAGAGAAAGAAACTGGCAGCAGTACTGCTGCCGCC-GCAGGCCATAACAA 3119 consensus_11342#2 CGGAAGGCACCAAAAAAAAAAACTGGCACCAGTATTGTTTCCCCCCGCAGGCCATAACAA 157 consensus_11342#1 CGGAAGGCAGCAGAGAAAGAAACTGGCAGCAGTAGTGCTGCCGCC-GCAGGCCATAACAA 443 ********* ** * *** ********* ***** ** * ** ** ************** consensus_11342#0 GGCTGATGCGAAGTAGGTCCTAGCATGGCATGAAATTTTGGTGGTCATCCCACAAAAAGG 3179 consensus_11342#2 GGGTTATGGGAAGTAGGTCCTAGCATGGCATGAAATTTTGGGGGTCTTCCCCCAAAAAGG 217 consensus_11342#1 GGCTCATGCGAAGTAGGTCCTAGCATGGCATGAAATTTTGGTGGTCATCCCACAAAAAGG 503 ** * *** ******************************** **** **** ******** consensus_11342#0 AGAAAGTAGCAAAACCGTTTTTGTTTGGTGAAAAACTTAAGGATTTGAGTAGACACCTGT 3239 consensus_11342#2 AGAAAGTAGCAAACCCGTTTTTGTTTGGTGAAAAACTTAAGGATTTGAGTAAACCCCTGT 277 consensus_11342#1 AGAAAGTAGCAAAACCGTTTTTGTTTGGTGAAAA-CTTAAGGTTTTGAGTAGACACCTGT 562 ************* ******************** ******* ******** ** ***** consensus_11342#0 GCAGATTTTGTTCTCCCCTGCCGACGATACTTGTGTGGCCTTGTCCAGGAAATTTTCCTC 3299 consensus_11342#2 GCAGATTTTGTTTTCCCCCCCCGACAAAAATTGTGTGGCCTTGTCCAGGAAATTTTCCTT 337 consensus_11342#1 GCAGATTTTGTTCTCCCCTGCCGACGATACTTGTGTGGACTTGTCCAGGAAATGTGTCCT 622 ************ ***** ***** * * ******** ************** * * consensus_11342#0 TCGCATTTTTTCCCATTACATTCCTGGCGCAGCGCCCTGTGGGATTTGTACATAAAGATA 3359 consensus_11342#2 TTGCATTTTTTCCCATTACATTTCTGGGGCAGGGCCCTGTGGGATTTGTACAAAAAAAAA 397 consensus_11342#1 TTGCATTGTTGGCCCTTACATTGCTGGCGCAACGCCCTGTGGGATTTGTTCATAAAGATA 682 * ***** ** ** ******* **** *** **************** ** *** * * consensus_11342#0 ATAATTACTTGTTGATTAAATGGACAAATAATAGAGCCTGGAGTTAAAATGACACGGCAT 3419 consensus_11342#2 AAAATTACTTGTTGATTAAAAGGGCAAAAAATAAAGCCTGGGGTTAAAAAAAAAAAAAAA 457 consensus_11342#1 -TTATTGCCTGGTGGTTGAATGGACAAATTATCGACCCTCGGGT-GGATTCGCACAAAAT 740 *** * ** ** ** ** ** **** ** * *** * ** * * * consensus_11342#0 TGTCGTCTTGC------------------------------------------------- 3430 consensus_11342#2 AAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 483 consensus_11342#1 ACAAGACTAGTTTACGTTAATGTTGCCGTCATGCTTGTTCTGTGTCGTCGTTGGCGCTCG 800 consensus_11342#0 ------------------------------------------------------------ consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 CCTTCCCCCTACNCCATCAAAATGTTCTCCTATCTCGTTTAATGTGACTGGTATCGAACT 860 consensus_11342#0 ------------------------------------------------------------ consensus_11342#2 ------------------------------------------------------------ consensus_11342#1 ACCTACGGTGTGCTTCTTTTAGAGCTTCTCGAGTTATAGTATTTTACGTATTGAAAATGT 920 consensus_11342#0 --------------------------------------------------------- consensus_11342#2 --------------------------------------------------------- consensus_11342#1 CCGTCTCCCCTACTATTTTATGTGCGCGTGATAGTGGCTGTTTTATTCTTTGTCTGC 977 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||