These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2222 fasta sequence [TATCGCGTACGACACCCGAGCCGAACCCCCCAACCCGAGGCGGCGGCGGCTGCGGCGGCGGAGGCGAGCGGGATGTACCCGGTGGTGATGGGGCGGCCGCCGGCGAGGCTGCCGGCGTCGACGCGGGTGGACAAGGCGACGAGCCACCTGCTGCAGGGCCCCGACTGGGCCATCAACCTCGAGATATGCGACACCCTCAACGCCGACCGCTGGCAAACAAAGGATGTGGTAAAAGCTGTGAAGAAGCGGTTGCAACATAAAGATCCAAGAGTTCAGTTTTTCACTTTGACGTTGTTGGAGACAATGATGAAGAACTGTGGTGAATATGTCCATTTTGAAGTTGTTGAACAACATATTTTGCAAGAAATGGTTAGAATTGTCCAGAAGAAGCGTGATACTCAAGTGAGGGATAAAGTATTGATACTTCTGGACTCATGGCAAGAAGCATTTGGTGGACCTGGAGGCAAATATCCACAGTATTACTGGTCATACATTGAACTTAAGAGGTCAGGAATAATGTTTCCCAGGCGCCCTGTAGATGCTCCTCCAATATTTACTCCCCCTGCAACACATCATACTCAGTCTTATGGTTCACCTACATATCCTGCTGGAAGTCTAAATGAGAGAATGACATCCGATGTTGAAACTCTGAGTTTAGGGGACTTAAATAATATTAGAGATACAACAGAACTTCTGTGTGATATGGTGAATGCTTTGAATCCTTCTGATCGCATGGCTGTTAAAGATGAAATTATTTCAGAGCTTGTCACCCAATGCCGATCAAATCAACAAAAGCTCATGCGATTTGTCAGTTCCACAGGAAATGAGGAGCTACTGAAGCAAGGCCTAGAAATCAATGATCACTTACAGAGCGTACTTGCAAAACATGATGCCATTGCTTCTGGAGCTCCTTTGCCGGTCGAAACACCAAGGAAAGACGAGATACCCAGAGAAGATCCAAAAATAAAGCCATCTGCACCTCCGATTGCACCTCCATCCGCACCTCCAGTTGAAGAGGATGAAGATGACGAGTTCGCTCAGATAGCAAGAAGAAAAAACAAATCTGTGATAAGTAGTGATGAGGCATCATCCAGTGCTGGTGATCAGGCCCTTGTACCCGTTGACCCAGTAACTTCTGAAGCCTCATCTTCTGTTGCAAGCAATGCAGTGGTGCCTGTTGACTCGTCTCCTGCCAGTGGTACTCGGACAAGAGAGCAGGACATGATCGACCTTCTAAGCCTCACCCTGTACAGCCCCCCTGAAGCATCTACAGATTCTTCTTCACAGACCCAAAATGGCACGCAGCAGTCTGTCACGTCAAATGGGCCAGAATTACCACCAAACTATCAGCCTGCTGCATCAAATGGATCACATTACTCTTCTAACCAGCAGGCATATCCAACGAATCAAGCTTACACCCCATACAACAATTATGTTGTACCTTGGGCCCAAGCTGGACAGGGCACACAGGCTGGAGGAGCATATCAAACTCAGCCCATGCAACAATATGGATCTAGCTACCCAGCACCACCATGGGCGATGCCAGCAAGTGTCAACTCAACCAATCCTTTTCAGCCTGCAACATACCAGATGCAGAACCCTCCTGTTGCTTCTGTTGCCCCCACAAATACCTATCCAGCTCCTTCATCGCCGTATGCTGCTCCGCCAAGGCAACAAGTGCCATCTCCTGCAACCAAACCGATGCAACAGTACAACTCCTTTGTTTCTCAAACAAGAAGTGGTCCGGCAATGGCTCAAGATGTTAGAATGAATGGTAATCCACGGCCATCAGAAACTACAGCGGCTGCGGCCAAACCATACTACATGCCAGACAATTTGTTTGGTGATTTGATTGATGTGAAGAGTTATGGTGGAGGCA-AGATGAGTAGAACGGCGAGCATGCCTAGTCCA-AATGGCAGTGGCCAACCTTTGCTGGGTGGGAAGAAATAGTTCTAGAGTTCCAAGCTAGCTACTACGGTTGTTCCACACGTGTCTATATTTGCTGTTGTATATCTGTTAAGGTTTCGCGTTGGTTACA-TTTGTTAATTTCGTGGTTGCCGCTTGTATTTTAAAAGAGTAGAGCATCATTGCTTGTAAATGATCGATGACATTCATCCGAGGGTGGCTTCTTGCTCGTTTAACTTCACCGCTTTGGTTTGTGAAGTATGTGTATATAATATTCAGCTGATGTGCAGACATTCTCTCATAAAAAAAAAAGCTGA] [+] EMBL AK065069 [TATCGCGTACGACACCCGAGCCGAACCCCCCAACCCGAGGCGGCGGCGGCTGCGGCGGCGGAGGCGAGCGGGATGTACCCGGTGGTGATGGGGCGGCCGCCGGCGAGGCTGCCGGCGTCGACGCGGGTGGACAAGGCGACGAGCCACCTGCTGCAGGGCCCCGACTGGGCCATCAACCTCGAGATATGCGACACCCTCAACGCCGACCGCTGGCAAACAAAGGATGTGGTAAAAGCTGTGAAGAAGCGGTTGCAACATAAAGATCCAAGAGTTCAGTTTTTCACTTTGACGTTGTTGGAGACAATGATGAAGAACTGTGGTGAATATGTCCATTTTGAAGTTGTTGAACAACATATTTTGCAAGAAATGGTTAGAATTGTCCAGAAGAAGCGTGATACTCAAGTGAGGGATAAAGTATTGATACTTCTGGACTCATGGCAAGAAGCATTTGGTGGACCTGGAGGCAAATATCCACAGTATTACTGGTCATACATTGAACTTAAGAGGTCAGGAATAATGTTTCCCAGGCGCCCTGTAGATGCTCCTCCAATATTTACTCCCCCTGCAACACATCATACTCAGTCTTATGGTTCACCTACATATCCTGCTGGAAGTCTAAATGAGAGAATGACATCCGATGTTGAAACTCTGAGTTTAGGGGACTTAAATAATATTAGAGATACAACAGAACTTCTGTGTGATATGGTGAATGCTTTGAATCCTTCTGATCGCATGGCTGTTAAAGATGAAATTATTTCAGAGCTTGTCACCCAATGCCGATCAAATCAACAAAAGCTCATGCGATTTGTCAGTTCCACAGGAAATGAGGAGCTACTGAAGCAAGGCCTAGAAATCAATGATCACTTACAGAGCGTACTTGCAAAACATGATGCCATTGCTTCTGGAGCTCCTTTGCCGGTCGAAACACCAAGGAAAGACGAGATACCCAGAGAAGATCCAAAAATAAAGCCATCTGCACCTCCGATTGCACCTCCATCCGCACCTCCAGTTGAAGAGGATGAAGATGACGAGTTCGCTCAGATAGCAAGAAGAAAAAACAAATCTGTGATAAGTAGTGATGAGGCGTCATCCAGTGCTGGTGATCAGGCCCTTGTACCCGTTGACCCAGTAACTTCTGAAGCCTCATCTTCTGTTGCAAGCAATGCAGTGGTGCCTGTTGACTCGTCTCCTGCCAGTGGTACTCGGACAAGAGAGCAGGACATGATCGACCTTCTAAGCCTCACCCTGTACAGCCCCCCTGAAGCATCTACAGATTCTTCTTCACAGACCCAAAATGGCACGCAGCAGTCTGTCACGTCAAATGGGCCAGAATTACCACCAAACTATCAGCCTGCTGCATCAAATGGATCACATTACTCTTCTAACCAGCAGGCATATCCAACGAATCAAGCTTACACCCCATACAACAATTATGTTGTACCTTGGGCCCAAGCTGGACAGGGCACACAGGCTGGAGGAGCATATCAAACTCAGCCCATGCAACAATATGGATCTAGCTACCCAGCACCACCATGGGCGATGCCAGCAAGTGTCAACTCAACCAATCCTTTTCAGCCTGCAACATACCAGATGCAGAACCCTCCTGTTGCTTCTGTTGCCCCCACAAATACCTATCCAGCTCCTTCATCGCCGTATGCTGCTCCGCCAAGGCAACAAGTGCCATCTCCTGCAACCAAACCGATGCAACAGTACAACTCCTTTGTTTCTCAAACAAGAAGTGGTCCGGCAATGGCTCAAGATGTTAGAATGAATGGTAATCCACGGCCATCAGAAACTACAGCGGCTGCGGCCAAACCATACTACATGCCAGACAATTTGTTTGGTGATTTGATTGATGTGAAGAGTTATGGTGGAGGCA AGATGAGTAGAACGGCGAGCATGCCTAGTCCA AATGGCAGTGGCCAACCTTTGCTGGGTGGGAAGAAATAGTTCTAGAGTTCCAAGCTAGCTACTACGGTTGTTCCACACGTGTCTATATTTGCTGTTGTATATCTGTTAAGGTTTCGCGTTGGTTACA TTTGTTAATTTCGTGGTTGCCGCTTGTATTTTAAAAGAGTAGAGCATCATTGCTTGTAAATGATCGATGACATTCATCCGAGGGTGGCTTCTTGCTCGTTTAACTTCACCGCTTTGGTTTGTGAAGTATGTGTATATAATATTCAGCTGATGTGCAGACATTCTCTCATATATTGCCAAGCTGA] [+] EMBL OSS14889A [ TCAGTTCCACAGGAAATGAGGAGCTACTGAAGCAAGGCCTAGAAATCAATGATCACTTACAGAGCGTACTTGCAAAACATGATGCCATTGCTTCTGGAGCTCCTTTGCCGGTCGAAACACCAAGGAAAGACGAGATACCCAGAGAAGATCCAAAAATAAAGCCATCTGCACCTCCGATTGCACCTCCATCCGCACCTCCAGTTGAAGAGGATGAAGATGACGAGTTCGCTCAGATAGCAAGAAGAAAAAACAAATCTGTGATAAGTAGTGATGAGGCATCATCCAGTGCTGGTGATCAGGCCCTTGTACCCGTTGACCCAGTAACTTCTGAAGCCTCATCTTCTGTTGCAAGCAATGCAGTGGTGNCTGTTGACTCGTCTCCTGCCAGTGGTACTCGGACAAGAGAGCAGGACATTGTCGACCTTCTAAG CTCACCCTt ] [+] EMBL CF309037 [ AATGAGGAGCTACTGAAGCGAGGCCTAGAAATCAATGATCACTTACAGAGCGTACTTGCAAAACATGATGCCATTGCTTCTGGAGCTCCTTTGCCGGTCGAAACACCAAGGAAAGACGAGATACCCAGAGAAGATCCAAAAATAAAGCCATCTGCACCTCCGATTGCACCTCCATCCGCACCTCCAGTTGAAGAGGATGAAGATGACGAGTTCGCTCAGATAGCAAGAAGAAAAAACAAATCTGTGATAAGTAGTGATGAGGCATCATCCAGTGCTGGTGATCAGGCCCTTGTACCCGTTGACCCAGTAACTTCTGAAGCCTCATCTTCTGTTGCAAGCAATGCAGTGGTGCCTGTTGACTCGTCTCCTGCCAGTGGTACTCGGACAAGAGAGCAGGACATGATCGACCTTCTAAGCCTCACCCTGTACAGCCCCCCTGAAGCATCTACAGATTCTTCTTCACAGACCCAAAATGGCACGCAGCAGTCTGTCACGTCAAATGGGCCAGAATTACCACCAAACTATCAGCCTGCTGCATCAAATGGATCACATTACTCTTCTAACCAGCAGGCATATCCAACGAATCAAGCTTACACCCCATACAACAATTATGTTGTACCTTGGGCCCAAGCTGGACAGGGCACACAGGCTGGAGGAGCATATCAAA ] [+] EMBL CF305080 [ GAAAGACGAGATACCCAGAGAAGATCCAAAAATAAAGCCATCTGCACCTCCGATTGCACCTCCATCCGCACCTCCAGTTGAAGAGGATGAAGATGACGAGTTCGCTCAGATAGCAAGAAGAAAAAACAAATCTGTGATAAGTAGTGATGAGGCATCATCCAGTGCTGGTGATCAGGCCCTTGTACCCGTTGACCCAGTAACTTCTGAAGCCTCATCTTCTGTTGCAAGCAATGCAGTGGTGCCTGTTGACTCGTCTCCTGCCAGTGGTACTCGGACAAGAGAGCAGGACATGATCGACCTTCTAAGCCTCACCCTGTACAGCCCCCCTGAAGCATCTACAGATTCTTCTTCACAGACCCAAAATGGCACGCAGCAGTCTGTCACGTCAAATGGGCCAGAATTACCACCAAACTATCAGCCTGCTGCATCAAATGGATCACATTACTCTTCTAACCAGCAGGCATATCCAACGAATCAAGCTTACACCCCATACAACAATTATGTTGTACCTTGGGCCCAAGCTGGACAGGGCACACAGGCTG ] [-] EMBL CB644983 [ AATTATGTTGTACCTTGGGCCCAAGCTGGACAGGGCACACAGGCTGGAGGAGCATATCAAACTCAGCCCATGCAACAATATGGATCTAGCTACCCAGCACCACCATGGGCGATGCCAGCAAGTGTCAACTCAACCAATCCTTTTCAGCCTGCAACATACCAGATGCAGAACCCTCCTGTTGCTTCTGTTGCCCCCACAAATACCTATCCAGCTCCTTCATCGCCGTATGCTGCTCCGCCAAGGCAACAAGTGCCATCTCCTGCAACCAAACCGATGCAACAGTACAACTCCTTTGTTTCTCAAACAAGAAGTGGTCCGGCAATGGCTCAAGATGTTAGAATGAATGGTAATCCACGGCCATCAGAAACTACAGCGGCTGCGGCCAAACCATACTACATGCCAGACAATTTGTTTGGTGATTTGATTGATGTGAAGAGTTATGGTGGAGGCA AGATGAGTAGAACGGCGAGCATGCCTAGTCCA AATGGCAGTGGCCAACCTTTGCTGGGTGGGAAGAAATAGTTCTAGAGTTCCAAGCTAGCTACTACGGTTGTTCCACACGTGTCTATATTTGCTGTTGTATATCTGTTAAGGTTTCGCGTTGGTTACA TTTGTTAATTTCGTGGTTGCCGCTTGTATTTTAAAAGAGTAGAGCATCATTGCTTGTAAATGATCGATGACATTCATCCGAGGGTGGCTTCTTGCTCGTTTAACTTCACCGCTTTGGTTTGTGAAGTATGTGTATATAATGTTCAGCTGATGTGCAGACATTCTCTCATAAAAAATAAAa ] [+] EMBL AU089768 [ AGCACCACCATGGGCGATGCCAGCAAGTGTCAACTCAACCAATCCTTTTCAGCCTGCAACATACCAGATGCAGAACCCTCCTGTTGCTTCTGTTGCCCCCACAAATACCTATCCAGCTCCTTCATCGCCGTATGCTGCTCCGCCAAGGCAACAAGTGCCATCTCCTGCAACCAAACCGATGCAACAGTACAACTCCTTTGTTTCTCAAACAAGAAGTGGTCCGGCAATGGCTCAAGATGTTAGAATGAATGGTAATCCACGGCCATCAGAAACTACAGCGGCTGCGGCCAAACCATACTACATGCCAGACAATTTGTTTGGTGATTTGATTGATGTGAAGAGTTATGGTGGAGGCA AGATGAGTAGAACGGCGAGCATGCCTAGTCCA AATGGCAGTGGCCAACCTTTGCTGGGTGGGAAGAAATAGTTCTAGAGTTCCAAGCTAGCTACTACGGTTGTTCCACACGTGTCTATATTTGCTGTTGTATATCTGTTAAGGTTTCGCGTTGGTTACA TTTGTTAATTTCGTGGTTGCCGCTTGTATTTTAAAAGAGTAGAGCATCATTGCTTGTAAATGATCGATGACATTCATCCGAGGGTGGCTTCTTGCTCGTTTAACTTCACCGCTTTGGTTTGTGAAGTATGTGTATATAATATTCAGCTGATGTGCAGACATTCTCTCAAAAAAAA ] [+] EMBL BM038123 [ TACAGC GCTGCGGCC AACCATACTACATGCCAGACCATTTGTTTGGTGATTTGATTGATGTGAAGAATTATGGTGGAGGCACAGATGAGTAGAACGGCGAGCATGCCTAGTCCACAATGGCAGTGGCCAACCTTTGCTGGGTGGGAAGAAATAGTTCTAGAGTTCCAAGCTAGCTACTACGGTTGTTCCACACGTGTCTATATTTGCTGTTGTATATCTGTTAAGGTTTCGCGTTGGTTACACTTGGTTAATTTCGTGGTTGCCGCTTGTATTTTAAAAGAGTAGAGCATCATTGCTTGTAAATGATCGATGACATTCATCCGAGGGTGGCTTCTTGCTCGTTTAACTTCACCGCTTTGGTTTGTGAAGTATGTGTATATAATATTCAGCTGATGTCCAGACATTCTCTCATAAAAAAAAAA ] [+] EMBL BM038243 [ TACAGCGGCTGCGGCCAAACCATACTACATGCCAGACAATTTGTTTGGTGATTTGATTGATGTGAAGAATTATGGTGGAGGCA AGATGAGTAGAACGGCGAGCATGCCTAGTCCA AATGGCAGTGGCCAACCTTTGCTGGGTGGGAAGAAATAGTTCTAGAGTTCCAAGCTAGCTACTACGGTTGTTCCACACGTGTCTATATTTGCTGTTGTATATCTGTTAAGGTTTCGCGTTGGTNACA TTGNNTAATTTCGTGGTTGCCGCTTGTATTTTAAAAGAGTAGAGCATCATTGCTTGTAAATGATCGATGACATTCATCCGAGGGTGGCTTCTTGCTCGTTTAACTTCACCGCTTTGGTTTGTGAAGTATGTGTATATAATATTCAGCTNAT CCCAGACATTCTCTCATAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||