These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 520 fasta sequence [ACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATC-GCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCCC-GTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCCTTCATATTTTAATGTATGACACCATTGACTTTTTAACCAAAA] [+] EMBL AK062758 [ACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATC GCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCCC GTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCCTTCATATTTTAATGTATGACACCATTGACTTTTTAACCA ] [+] EMBL CF300388 [ TTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATC GCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGA ] [+] EMBL AU174837 [ CTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATC GCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGAGCATCAAAT ] [+] EMBL AU174836 [ CGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGNTCGATCGATCGATCAGGNCTGTGTATTGCGCCGTGTAGTACGTGAGAGGNTCGGAGTCGGAGCAGCGAGCGNNATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGGCTGCCGCTGCTGGCGCTCATCATAATNGTCGCCATCGTCCTNTGCGTCATCTGCCGCNAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCCCTGTTGTTGTTGGGCACGGTGATTGCCGNCAGAAAGAATTACTCCCTTCATATTTTAATGTATGACNCCATTGACTTTTTAAAAAAAA] consensusID : consensus_11356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 459 fasta sequence [GCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCATTTTGCATCAAATGTGATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTAATGTACGACACCATTAACTTTTACAAGCTTATTCCCCTAGTGAGGTATTTAGG] [-] EMBL BI306035 [GCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCATTTTGCATCAAATGTGATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTAATGTACGACACCATTAACTTTTACAAGCTTATTCCCC ] [-] EMBL CB966463 [ AGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCATTTTGCATCAAATGTGATCATTTTGCCGCCCGTTGTTGTT GGCACGGTGATTAATGTACGACACCATT ACTTTTAC AGC TATTCCCTTAGTGAGGTATTTAGG] consensusID : consensus_11356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [CACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGTACGTGCAACACATGGTGTACGTTTCACATATATGTCATTCAACAAATTAGGTAGCATCATTTTAGTAGTGCCAAGATTGATTCAAACAAGCCCTATATCAATTTTTGTGTTTATTGCAAGTAGCCTTCTCTCACTCAGCCCATGTGCTCTGTAGTCTGTACAAATATAGTCCTACTACTACTCGAGTTGAGAGATTCAGTTTAGCACATACTGAATTAAGCCCAAGTTTAGATTTGAAGTTTTTCTTCAAACTTTCAACTTTTCCATCACATCAAAACTTTTCTACACACAAACTTCTAACTTTTCC] [+] EMBL CF309237 [CACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGTACGTGCAACACATGGTGTACGTTTCACATATATGTCATTCAACAAATTAGGTAGCATCATTTTAGTAGTGCCAAGATTGATTCAAACAAGCCCTATATCAATTTTTGTGTTTATTGCAAGTAGCCTTCTCTCACTCAGCCCATGTGCTCTGTAGTCTGTACAAATATAGTCCTACTACTACTCGAGTTGAGAGATTCAGTTTAGCACATACTGAATTAAGCCCAAGTTTAGATTTGAAGTTTTTCTTCAAACTTTCAACTTTTCCATCACATCAAAACTTTTCTACACACAAACTTCTAACTTTTCC] consensusID : consensus_11356#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [TGTATCGCTGGTTGCTGATTTGGTTGAGATGGGTTTAATTTAATTCTATTCAATTTAATTGTTGTTTGCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCCTTCATATTTTAATGTATGACACCATTGACTTTTTAAAAAA] [-] EMBL CF309236 [TGTATCGCTGGTTGCTGATTTGGTTGAGATGGGTTTAATTTAATTCTATTCAATTTAATTGTTGTTTGCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCCTTCATATTTTAATGTATGACACCATTGACTTTTTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11356#0 -ACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTA 59 consensus_11356#3 ------------------------------------------------------------ consensus_11356#1 -----------------------------------------------GCTCTCATTAGTA 13 consensus_11356#2 CACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTA 60 consensus_11356#0 CTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCG 119 consensus_11356#3 ------TGTATCG-CTGGTTGCTGATTTGGTTGAGATG--GGTTTAATTTA---ATTCTA 48 consensus_11356#1 CTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCG 73 consensus_11356#2 CTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCG 120 * *** ** **** * * * * ** * ** consensus_11356#0 TCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGAT 179 consensus_11356#3 TTCAATTTAATTGTTGTTTG--CAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGAT 106 consensus_11356#1 TCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGAT 133 consensus_11356#2 TCAGATCGATCGATCGATCGATCAGGTACGTGCAACACATGGTGTA-CGTTTCACATATA 179 * ** * * * * * **** *** * * ***** * * * consensus_11356#0 CGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCG 239 consensus_11356#3 CGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCG 166 consensus_11356#1 CGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCG 193 consensus_11356#2 TGTCATTCAACAAATTAGGTAGCATCATTTTAGTAG--TGCCAAGATTGAT-TCAAACAA 236 * * * * ** ** * ** ** * * **** *** *** * consensus_11356#0 ATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATAT-CGCTGCCGCTGCTGGC 298 consensus_11356#3 ATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATAT-CGCTGCCGCTGCTGGC 225 consensus_11356#1 ATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATAT-CGCTGCCGCTGCTGGC 252 consensus_11356#2 G---CCCTATATCAATTT---TTGTGTTTATTGCAAGTAGCCTTCTCTCACTCAGCCCAT 290 *** ** ***** ** * *** ** * * ** * * ** consensus_11356#0 GCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCT 358 consensus_11356#3 GCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCT 285 consensus_11356#1 GCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCT 312 consensus_11356#2 GTGCTCTGTAGTCTGTACAAATATAGTC--CTACTACTACT-CGAGTTGAGA-GATTCAG 346 * * ** ** * * * ** * * ** * * ** * ** ***** consensus_11356#0 TCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGT 418 consensus_11356#3 TCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGT 345 consensus_11356#1 TCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCATTT-----TGCATCAAATGT 367 consensus_11356#2 TTTAGCACATACTGA-ATTAAGCCCAAGTTTAGATTTGAAGTTT----TTCTTCAAACTT 401 * ** * *** ** * * *** * * * * * ***** * consensus_11356#0 GATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCC 478 consensus_11356#3 GATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCC 405 consensus_11356#1 GATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTAATGTACGACACCATTAACTTT 427 consensus_11356#2 TCAACTTTTCCATCACAT----------CAAAACTTTTCTACACACAAACTTCTAACTTT 451 **** * * * * ** ** * * ** consensus_11356#0 TTCATATTTTAATGTATGACACCATTGACTTTTTAACCAAAA 520 consensus_11356#3 TTCATATTTTAATGTATGACACCATTGACTTTTTAAAAAA-- 445 consensus_11356#1 TACAAGCTT------ATTCCCCTAGTGAGGTATTTAGG---- 459 consensus_11356#2 TCC--------------------------------------- 454 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||