cluster # 11356

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11356 cluster # 11356 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11356#0 length = 520 sequences # 4
consensus_11356#1 length = 459 sequences # 2

consensus_11356#2 length = 454 sequences # 1
consensus_11356#3 length = 445 sequences # 1

consensusID : consensus_11356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 520
fasta sequence

                              [ACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATC-GCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCCC-GTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCCTTCATATTTTAATGTATGACACCATTGACTTTTTAACCAAAA]

[+] EMBL AK062758             [ACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATC GCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCCC GTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCCTTCATATTTTAATGTATGACACCATTGACTTTTTAACCA   ]
[+] EMBL CF300388             [                 TTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATC GCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGA                                                                                                                                                                        ]
[+] EMBL AU174837             [                     CTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATC GCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGAGCATCAAAT                                                                                                         ]
[+] EMBL AU174836             [                                                                          CGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGNTCGATCGATCGATCAGGNCTGTGTATTGCGCCGTGTAGTACGTGAGAGGNTCGGAGTCGGAGCAGCGAGCGNNATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGGCTGCCGCTGCTGGCGCTCATCATAATNGTCGCCATCGTCCTNTGCGTCATCTGCCGCNAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCCCTGTTGTTGTTGGGCACGGTGATTGCCGNCAGAAAGAATTACTCCCTTCATATTTTAATGTATGACNCCATTGACTTTTTAAAAAAAA]




>consensus_11356#0
ACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTAC
TCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGT
CAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATC
GGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGA
TCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGC
TCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTC
CTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGA
TCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCCTT
CATATTTTAATGTATGACACCATTGACTTTTTAACCAAAA

consensusID : consensus_11356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 459
fasta sequence

                              [GCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCATTTTGCATCAAATGTGATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTAATGTACGACACCATTAACTTTTACAAGCTTATTCCCCTAGTGAGGTATTTAGG]

[-] EMBL BI306035             [GCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCATTTTGCATCAAATGTGATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTAATGTACGACACCATTAACTTTTACAAGCTTATTCCCC                ]
[-] EMBL CB966463             [         AGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCATTTTGCATCAAATGTGATCATTTTGCCGCCCGTTGTTGTT GGCACGGTGATTAATGTACGACACCATT ACTTTTAC AGC TATTCCCTTAGTGAGGTATTTAGG]




>consensus_11356#1
GCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGA
TCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAG
TACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGAT
CGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCT
GCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCT
TAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCATTTTGCAT
CAAATGTGATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTAATGTACGACACCAT
TAACTTTTACAAGCTTATTCCCCTAGTGAGGTATTTAGG

consensusID : consensus_11356#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [CACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGTACGTGCAACACATGGTGTACGTTTCACATATATGTCATTCAACAAATTAGGTAGCATCATTTTAGTAGTGCCAAGATTGATTCAAACAAGCCCTATATCAATTTTTGTGTTTATTGCAAGTAGCCTTCTCTCACTCAGCCCATGTGCTCTGTAGTCTGTACAAATATAGTCCTACTACTACTCGAGTTGAGAGATTCAGTTTAGCACATACTGAATTAAGCCCAAGTTTAGATTTGAAGTTTTTCTTCAAACTTTCAACTTTTCCATCACATCAAAACTTTTCTACACACAAACTTCTAACTTTTCC]

[+] EMBL CF309237             [CACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTACTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCGTCAGATCGATCGATCGATCGATCAGGTACGTGCAACACATGGTGTACGTTTCACATATATGTCATTCAACAAATTAGGTAGCATCATTTTAGTAGTGCCAAGATTGATTCAAACAAGCCCTATATCAATTTTTGTGTTTATTGCAAGTAGCCTTCTCTCACTCAGCCCATGTGCTCTGTAGTCTGTACAAATATAGTCCTACTACTACTCGAGTTGAGAGATTCAGTTTAGCACATACTGAATTAAGCCCAAGTTTAGATTTGAAGTTTTTCTTCAAACTTTCAACTTTTCCATCACATCAAAACTTTTCTACACACAAACTTCTAACTTTTCC]




>consensus_11356#2
CACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTA
CTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCG
TCAGATCGATCGATCGATCGATCAGGTACGTGCAACACATGGTGTACGTTTCACATATAT
GTCATTCAACAAATTAGGTAGCATCATTTTAGTAGTGCCAAGATTGATTCAAACAAGCCC
TATATCAATTTTTGTGTTTATTGCAAGTAGCCTTCTCTCACTCAGCCCATGTGCTCTGTA
GTCTGTACAAATATAGTCCTACTACTACTCGAGTTGAGAGATTCAGTTTAGCACATACTG
AATTAAGCCCAAGTTTAGATTTGAAGTTTTTCTTCAAACTTTCAACTTTTCCATCACATC
AAAACTTTTCTACACACAAACTTCTAACTTTTCC

consensusID : consensus_11356#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [TGTATCGCTGGTTGCTGATTTGGTTGAGATGGGTTTAATTTAATTCTATTCAATTTAATTGTTGTTTGCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCCTTCATATTTTAATGTATGACACCATTGACTTTTTAAAAAA]

[-] EMBL CF309236             [TGTATCGCTGGTTGCTGATTTGGTTGAGATGGGTTTAATTTAATTCTATTCAATTTAATTGTTGTTTGCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCCTTCATATTTTAATGTATGACACCATTGACTTTTTAAAAAA]




>consensus_11356#3
TGTATCGCTGGTTGCTGATTTGGTTGAGATGGGTTTAATTTAATTCTATTCAATTTAATT
GTTGTTTGCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGATCGGAGTCGGAGCAG
CGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCGATCATCCTTAATTA
ATTTATCATGGAGCTGGTGCTGGTGATATCGCTGCCGCTGCTGGCGCTCATCATAATCGT
CGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCTTCCTGCCTCCGCGAT
CATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGTGATCATTTTGCCGCC
CGTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCCTTCATATTTTAATGT
ATGACACCATTGACTTTTTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11356#0      -ACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTA 59
consensus_11356#3      ------------------------------------------------------------
consensus_11356#1      -----------------------------------------------GCTCTCATTAGTA 13
consensus_11356#2      CACAGCCATTTCACTTGCTTTGCTCCACGCCTCCACCTACCTAAATCGCTCTCATTAGTA 60
                                                                                   

consensus_11356#0      CTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCG 119
consensus_11356#3      ------TGTATCG-CTGGTTGCTGATTTGGTTGAGATG--GGTTTAATTTA---ATTCTA 48
consensus_11356#1      CTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCG 73
consensus_11356#2      CTCAATTAAGTCGATCGGCGAGCGATTCAGCGCGGCTCCTCGACCGATCTCTCCGTTTCG 120
                             *   ***   **     ****  *    * *    *    ** *     **   

consensus_11356#0      TCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGAT 179
consensus_11356#3      TTCAATTTAATTGTTGTTTG--CAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGAT 106
consensus_11356#1      TCAGATCGATCGATCGATCGATCAGGGCTGTGTATTGCGCCGTGTAGTACGTGAGAGGAT 133
consensus_11356#2      TCAGATCGATCGATCGATCGATCAGGTACGTGCAACACATGGTGTA-CGTTTCACATATA 179
                       *   **  *    * * * *  ****   *** *   *   *****     * * *    

consensus_11356#0      CGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCG 239
consensus_11356#3      CGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCG 166
consensus_11356#1      CGGAGTCGGAGCAGCGAGCGAGATTTGTTGAAGCAAATTAAGTAGATCGATCTCATATCG 193
consensus_11356#2      TGTCATTCAACAAATTAGGTAGCATCATTTTAGTAG--TGCCAAGATTGAT-TCAAACAA 236
                        *   *   *  *   **  **  *  **  ** *   *    **** *** *** *   

consensus_11356#0      ATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATAT-CGCTGCCGCTGCTGGC 298
consensus_11356#3      ATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATAT-CGCTGCCGCTGCTGGC 225
consensus_11356#1      ATCATCCTTAATTAATTTATCATGGAGCTGGTGCTGGTGATAT-CGCTGCCGCTGCTGGC 252
consensus_11356#2      G---CCCTATATCAATTT---TTGTGTTTATTGCAAGTAGCCTTCTCTCACTCAGCCCAT 290
                            ***  ** *****    **    *  ***  **    * * **  * * **    

consensus_11356#0      GCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCT 358
consensus_11356#3      GCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCT 285
consensus_11356#1      GCTCATCATAATCGTCGCCATCGTCCTCTGCGTCATCTGCCGCTAGCTTAGCTGATTCCT 312
consensus_11356#2      GTGCTCTGTAGTCTGTACAAATATAGTC--CTACTACTACT-CGAGTTGAGA-GATTCAG 346
                       *  *    ** **    * *   *  **  *  *  ** *  * ** * **  *****  

consensus_11356#0      TCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGT 418
consensus_11356#3      TCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCAGTATGTGGTGCATCAAATGT 345
consensus_11356#1      TCCTGCCTCCGCGATCATTTTGCATACATGTAGTATGTCATTT-----TGCATCAAATGT 367
consensus_11356#2      TTTAGCACATACTGA-ATTAAGCCCAAGTTTAGATTTGAAGTTT----TTCTTCAAACTT 401
                       *   **     *    ***  **  *  * ***  *   * *      * * *****  *

consensus_11356#0      GATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCC 478
consensus_11356#3      GATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTGACGACAGAAAGAATTACTCCC 405
consensus_11356#1      GATCATTTTGCCGCCCGTTGTTGTTGGGCACGGTGATTAATGTACGACACCATTAACTTT 427
consensus_11356#2      TCAACTTTTCCATCACAT----------CAAAACTTTTCTACACACAAACTTCTAACTTT 451
                            **** *  * * *          **      **        * *    **     

consensus_11356#0      TTCATATTTTAATGTATGACACCATTGACTTTTTAACCAAAA 520
consensus_11356#3      TTCATATTTTAATGTATGACACCATTGACTTTTTAAAAAA-- 445
consensus_11356#1      TACAAGCTT------ATTCCCCTAGTGAGGTATTTAGG---- 459
consensus_11356#2      TCC--------------------------------------- 454
                       * *