These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [GAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGNNGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCANNNTCGGATTTGTCTANNGTGNNNACCACAGGTCCCCTGGATACTANNNNNNCNNNTNCTNNNNNATGTGGANNCTGCCCATGTTCNNNTGCNNN] [+] EMBL CF196031 [GAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGNNGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGCCTCGAGTTCAGCANNNTCGGATTTGTCTANNGTGNNNACCACAGGTCCCCTGGATACTANNNNNNCNNNTNCTNNNNNATGTGGANNCTGCCCATGTTCNNNTGCNNN] consensusID : consensus_1136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [CGAGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAANNNCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGNNNNNNNNCTGANNNNNNNCGAG] [+] EMBL CF197399 [CGAGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCGTCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCCCGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATGCAGGTGTGGCCGATTGAGGGCATCAAGAANNNCGAGACCCTCTCCTACCTGCCACCGCTCACCGTGGNNNNNNNNCTGANNNNNNNCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1136#0 --------------GAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCG 46 consensus_1136#1 CGAGCAAAGAAGGAGAGAGCTTGGTGAGCTGCAGAGATGGCCCCCTCCGTGATGGCGTCG 60 ********************************************** consensus_1136#0 TCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCC 106 consensus_1136#1 TCGGCCACCACCGTCGCTCCCTTCCAGGGGCTCAAGTCCACCGCCGGCATGCCCGTCGCC 120 ************************************************************ consensus_1136#0 CGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATG 166 consensus_1136#1 CGCCGCTCCGGCAACTCCAGCTTCGGCAACGTCAGCAATGGCGGCAGGATCAGGTGCATG 180 ************************************************************ consensus_1136#0 CAGGTGTGGCCGATTGAGGGCATCAAGAAGTTCGAGACCCTCTCCTACCTGCCACCGCTC 226 consensus_1136#1 CAGGTGTGGCCGATTGAGGGCATCAAGAANNNCGAGACCCTCTCCTACCTGCCACCGCTC 240 ***************************** **************************** consensus_1136#0 ACCGTGGNNGACCTCCTGAAGCAGATCGAGTACCTGCTCCGTTCCAAGTGGGTGCCCTGC 286 consensus_1136#1 ACCGTGGNNNNNNNNCTGANNNNNNNCGAG------------------------------ 270 ********* **** **** consensus_1136#0 CTCGAGTTCAGCANNNTCGGATTTGTCTANNGTGNNNACCACAGGTCCCCTGGATACTAN 346 consensus_1136#1 ------------------------------------------------------------ consensus_1136#0 NNNNNCNNNTNCTNNNNNATGTGGANNCTGCCCATGTTCNNNTGCNNN 394 consensus_1136#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||