These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2168 fasta sequence [GCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACACAACACGAGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTTCAACCACAGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGCAGCCGTCGACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAGCGGCATCAGCTCAAGGCATGTCAATCGGGATCAACTACGGGCAGATCGCGGACAACCTCCCTTCTCCGACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGCTCTACGACGCCGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCGTCGGCATCGGCAACGAGAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGGGTGCAGCAGCACGTCCGCCCCTACCTCCCGAGCGCGCGCATCACCTGCATCACCGTCGGGAACGAGGTGTTCAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATGCAGTCCGTGTACAACGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACGGCGCACTCCCTGGACATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCCGACGCCGTGCCGTACATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTCCTGATCAACTGCTACCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAGTACGTCCTCTTCCAGCCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGACAACATGCTGTACGCCCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACACCGACGTCGACGTGAAGATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGCCGGCGCGACGCCGGAGTACGCCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGTAAGATAGTTGGAAGACAACCAGCATTTTTATCTATGTAGTTTTTTTTTTGAGTGAATTTATCTATGTAGTGGATTCTTCATGTAGTAAAATAGCTTGTTTTGGATTAAGAAATAGAGAAAATTCTTCAAATTTGGAAGATCTAGTAAATTCTGATACTATAGTAGTTTGCCATATTAGTAGGAATTAATCACCTATATGCTCATGCCACATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGCAAACTGTATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATTTGTAGTATTGTACATATTATGTGGCCCTTTTCGATGTGTAATAATTTTGATCTGAGAGTTTCAGGGCGTAGTACTCGTGCAGACAG--GTGTGTGTATAGTACAGTAGTACATGTGTGATTATAAAAGTTGCAAAATTGTAACCTAATTAATACCCCCTATGTTTCAACATTTTTACTTATTATCCCACACATATCAATAAGAAACCAA] [+] EMBL AK121151 [GCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACACAACACGAGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTTCAACCACAGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGCAGCCGTCGACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAGCGGCATCAGCTCAAGGCATGTCAATCGGGATCAACTACGGGCAGATCGCGGACAACCTCCCTTCTCCGACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGCTCTACGACGCCGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCGTCGGCATCGGCAACGAGAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGGGTGCAGCAGCACGTCCGCCCCTACCTCCCGAGCGCGCGCATCACCTGCATCACCGTCGGGAACGAGGTGTTCAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATGCAGTCCGTGTACAACGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACGGCGCACTCCCTGGACATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCCGACGCCGTGCCGTACATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTCCTGATCAACTGCTACCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAGTACGTCCTCTTCCAGCCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGACAACATGCTGTACGCCCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACACCGACGTCGACGTGAAGATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGCCGGCGCGACGCCGGAGTACGCCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGTAAGATAGTTGGAAGACAACCAGCATTTTTATCTATGTAGTTTTTTTTTTGAGTGAATTTATCTATGTAGTGGATTCTTCATGTAGTAAAATAGCTTGTTTTGGATTAAGAAATAGAGAAAATTCTTCAAATTTGGAAGATCTAGTAAATTCTGATACTATAGTAGTTTGCCATATTAGTAGGAATTAATCACCTATATGCTCATGCCACATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGCAAACTGTATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATTT ] [+] EMBL CA761124 [ TTTTTTTTTTAAGTGAATTTATCTATGCAGTGGATTCTTCATGTAGTAAAATAGCTTGTTTTGGATTAAGAAATAGAGAAAATTCTTCAAATTTGGAAGATCTAGTAAATTCTGATACTATAGTAGTTTGCCATATTAGTAGGAATTAATCACCTATATGCTCATGCCACATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGCAAACTGTATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATTTGTAGTATTGTACATATTATGTGGCCCTTTTCGATGTGTAATAATTTTGATCTGAGAGTTTCAGGGCGTAGTACTCGTGCAGACAGGTGTGTGTGTATAGTACAGTAGTACATGTGTGATTATAAAAGTTGCAAAATTGTAACCTAATTAATACCCCCTATGTTTCAACATTTTT ] [-] EMBL CA766336 [ AGATCTAGTAAATTCTGATACTATAGTAGTTTGCCATATTAGTAGGAATTAATCACCTATATGCTCATGCCACATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGCAAACTGTATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATTTGTAGTATTGTACATATTATGTGGCCCTTTTCGATGTGTAATAATTTTGATCTGAGAGTTTCAGGGCGTAGTACTCGTGCAGACAG GTGTGTGTATAGTACAGTAGTACATGTGTGATTATAAAAGTTGCAAAATTGTAACCTAATTAATACCCCCTATGTTTCAACATTTTTACTTATTATCCCACACATATCAATAAGAAACCAA] consensusID : consensus_11376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1579 fasta sequence [CCCCGATCCATCCAAATTCCAAGACAAGCTCCTCGTGCTTTCCTGCCTTGCCGCTGCGTCGCTCTCGCTCTCCACGGCACGCGCACGCAACGCGCGACGCGGTCCGGCGCTAGCTGAGCTGTGACTAGCCGAGCAAACACCCGCGGCTCGCCACCCCGACGGTTACCGCCGCGCGCCACCCCCCACCCGCACTGCATAAAAACGCCCCACCTCCGCCGAATCGCCGATCCGCGCGCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACACAACACGAGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTTCAACCACAGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGCAGCCGTCGACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAGCGGCATCAGCTCAAGGCATGTCAATCGGGATCAACTACGGGCAGATCGCGGACAACCTCCCTTCTCCGACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGCTCTACGACGCCGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCGTCGGCATCGGCAACGAGAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGGGTGCAGCAGCACGTCCGCCCCTACCTCCCGAGCGCGCGCATCACCTGCATCACCGTCGGGAACGAGGTGTTCAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATGCAGTCCGTGTACAACGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACGGCGCACTCCCTGGACATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCCGACGCCGTGCCGTACATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTCCTGATCAACTGCTACCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAGTACGTCCTCTTCCAGCCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGACAACATGCTGTACGCCCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACACCGACGTCGACGTGAAGATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGCCGGCGCGACGCCGGAGTACGCCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGTAGGCGGTGTGAACTGTGAACTCGATCGTTTTTTTCTCCTTCAAAATCTGCAAAACTGTTACAAACTTTCTGCTGCATGTCACGCA] [+] EMBL AK110902 [CCCCGATCCATCCAAATTCCAAGACAAGCTCCTCGTGCTTTCCTGCCTTGCCGCTGCGTCGCTCTCGCTCTCCACGGCACGCGCACGCAACGCGCGACGCGGTCCGGCGCTAGCTGAGCTGTGACTAGCCGAGCAAACACCCGCGGCTCGCCACCCCGACGGTTACCGCCGCGCGCCACCCCCCACCCGCACTGCATAAAAACGCCCCACCTCCGCCGAATCGCCGATCCGCGCGCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACACAACACGAGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTTCAACCACAGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGCAGCCGTCGACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAGCGGCATCAGCTCAAGGCATGTCAATCGGGATCAACTACGGGCAGATCGCGGACAACCTCCCTTCTCCGACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGCTCTACGACGCCGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCGTCGGCATCGGCAACGAGAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGGGTGCAGCAGCACGTCCGCCCCTACCTCCCGAGCGCGCGCATCACCTGCATCACCGTCGGGAACGAGGTGTTCAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATGCAGTCCGTGTACAACGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACGGCGCACTCCCTGGACATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCCGACGCCGTGCCGTACATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTCCTGATCAACTGCTACCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAGTACGTCCTCTTCCAGCCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGACAACATGCTGTACGCCCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACACCGACGTCGACGTGAAGATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGCCGGCGCGACGCCGGAGTACGCCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGTAGGCGGTGTGAACTGTGAACTCGATCGTTTTTTTCTCCTTCAAAATCTGCAAAACTGTTACAAACTTTCTGCTGCATGTCACGCA] consensusID : consensus_11376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1176 fasta sequence [GCCTATCCAAGTGGAACGCAACAGAGGCGTCGTCTCCTCCTCTCCTCGACCTCTCGCGGTTGGAGGTCTCGCGCGCGCGTGAGGCAACAAGTGCCCGTTCGATCGACCGGCAAGGATGGCGACGGCAGCGAGAGCGGCGTCGTGCACCCCCGCCGCTTGCGCTGTGTTGGTCATCCCCATCCTAGTCCTGATCATGGCAGGGCAAGTGCGAGTCGCGGAGGCGCTGTCCATCGGCGTGAACTACGGGCAGATCGCGAACAACATCCCGTCGCCGTCGCGGGTGTCGTGGCTGCTCCGGTCGCTCAAGATCAGCAAGGTGAAGCTGTTCGACGCCGACCCGCACGTCCTGCGCGCGTTCCTCGGCACGGGCGTGGAGTTCGTGGTCGGCATCGGCAACGAGGCCGTCCCGGCGATGGCCAGCCCCGCGGCGGCGGAGTCGTGGCTGCAGCTGCACGTGGTGCCGCACCTCCGCGCCGGCGCGCGCATCACCTGCATCACCGTCGGCAACGAGGTGTTCAAGGGCAACGACACCGCCCTCCAGGCCAGCCTCCTCCCGGCGTTGCGGTCCGTGCACCAGGCGCTCGGCGCGCTCGGCCTCCAGGGCCGCGTCAACGTCACCACCGCGCACTCGCTGGACATCATGGGCGTGTCCTACCCGCCGTCCGCCGGTGCGTTCCACCCCTCCGCCGCGCCGCACCTGCAGCCGTTCCTGGCCTTCCTGTCGGCGGCGAGGGCGCCGTTCCTCATCAACTGCTACCCGTACTTCGCCTACAAGGACGACCCGGCGCGCGTGCCGCTGGAGTACGTGCTGTTCCAGCCCAACGCCGGCGTCGTCGACCCGCGCACGAGGCTCGTCTACGACAACATGCTGTACGCGCAGGTGGACGCCGTGTACGCGGCGATCCAGGCGATGGGGCACACGGACATCGACGTGAAGGTGTCGGAGACCGGGTGGCCGTCCCGCGGCGACCCCGACGAGGCCGGCGCGACGCCCGAGAACGCCGGGACGTACATCGGGAACCTCCTCCGGAGGATCGAGATGAAGCAGGGCACGCCGCTGCGGCCGCAGGCGCCCATCGACGTCTACGTCTTCGCGCTCTTCAACGAGAACCTCAAGCCCGGCCCGGCGTCGGAGCGGAACTACGGCCTCTTCTACCCCGACGGCACGCCGGTCTA] [+] EMBL AK073663 [GCCTATCCAAGTGGAACGCAACAGAGGCGTCGTCTCCTCCTCTCCTCGACCTCTCGCGGTTGGAGGTCTCGCGCGCGCGTGAGGCAACAAGTGCCCGTTCGATCGACCGGCAAGGATGGCGACGGCAGCGAGAGCGGCGTCGTGCACCCCCGCCGCTTGCGCTGTGTTGGTCATCCCCATCCTAGTCCTGATCATGGCAGGGCAAGTGCGAGTCGCGGAGGCGCTGTCCATCGGCGTGAACTACGGGCAGATCGCGAACAACATCCCGTCGCCGTCGCGGGTGTCGTGGCTGCTCCGGTCGCTCAAGATCAGCAAGGTGAAGCTGTTCGACGCCGACCCGCACGTCCTGCGCGCGTTCCTCGGCACGGGCGTGGAGTTCGTGGTCGGCATCGGCAACGAGGCCGTCCCGGCGATGGCCAGCCCCGCGGCGGCGGAGTCGTGGCTGCAGCTGCACGTGGTGCCGCACCTCCGCGCCGGCGCGCGCATCACCTGCATCACCGTCGGCAACGAGGTGTTCAAGGGCAACGACACCGCCCTCCAGGCCAGCCTCCTCCCGGCGTTGCGGTCCGTGCACCAGGCGCTCGGCGCGCTCGGCCTCCAGGGCCGCGTCAACGTCACCACCGCGCACTCGCTGGACATCATGGGCGTGTCCTACCCGCCGTCCGCCGGTGCGTTCCACCCCTCCGCCGCGCCGCACCTGCAGCCGTTCCTGGCCTTCCTGTCGGCGGCGAGGGCGCCGTTCCTCATCAACTGCTACCCGTACTTCGCCTACAAGGACGACCCGGCGCGCGTGCCGCTGGAGTACGTGCTGTTCCAGCCCAACGCCGGCGTCGTCGACCCGCGCACGAGGCTCGTCTACGACAACATGCTGTACGCGCAGGTGGACGCCGTGTACGCGGCGATCCAGGCGATGGGGCACACGGACATCGACGTGAAGGTGTCGGAGACCGGGTGGCCGTCCCGCGGCGACCCCGACGAGGCCGGCGCGACGCCCGAGAACGCCGGGACGTACATCGGGAACCTCCTCCGGAGGATCGAGATGAAGCAGGGCACGCCGCTGCGGCCGCAGGCGCCCATCGACGTCTACGTCTTCGCGCTCTTCAACGAGAACCTCAAGCCCGGCCCGGCGTCGGAGCGGAACTACGGCCTCTTCTACCCCGACGGCACGCCGGTCTA] [+] EMBL AK072635 [ CCTCGGCACGGGCGTGGAGTTCGTGGTCGGCATCGGCAACGAGGCCGTCCCGGCGATGGCCAGCCCCGCGGCGGCGGAGTCGTGGCTGCAGCTGCACGTGGTGCCGCACCTCCGCGCCGGCGCGCGCATCACCTGCATCACCGTCGGCAACGAGGTGTTCAAGGGCAACGACACCGCCCTCCAGGCCAGCCTCCTCCCGGCGTTGCGGTCCGTGCACCAGGCGCTCGGCGCGCTCGGCCTCCAGGGCCGCGTCAACGTCACCACCGCGCACTCGCTGGACATCATGGGCGTGTCCTACCCGCCGTCCGCCGGTGCGTTCCACCCCTCCGCCGCGCCGCACCTGCAGCCGTTCCTGGCCTTCCTGTCGGCGGCGAGGGCGCCGTTCCTCATCAACTGCTACCCGTACTTCGCCTACAAGGACGACCCGGCGCGCGTGCCGCTGGAGTACGTGCTGTTCCAGCCCAACGCCGGCGTCGTCGACCCGCGCACGAGGCTCGTCTACGACAACATGCTGTACGCGCAGGTGGACGCCGTGTACGCGGCGATCCAGGCGATGGGGCACACGGACATCGACGTGAAGGTGTCGGAGACCGGGTGGCCGTCCCGCGGCGACCCCGACGAGGCCGGCGCGACGCCCGAGAACGCCGGGACGTACATCGGGAACCTCCTCCGGAGGATCGAGATGAAGCAGGGCACGCCGCTGCGGCCGCAGGCGCCCATCGACGTCTACGTCTTCGCGCTCTTCAACGAGAACCTCAAGCCCGGCCCGGCGTCGGAGCGGAACTACGGCCTCTTCTACCCCGACGGCACGCCGGTCTA] consensusID : consensus_11376#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [CCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTAAAAAAA] [+] EMBL AU174632 [CCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTAT ] [+] EMBL AU174633 [ CGCGCGAAAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11376#0 GCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACACAACACG 60 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 ------------------------------------------------------------ consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 AGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTTCAACCAC 120 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 ------------------------------------------------------------ consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 AGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGCAGCCGTC 180 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 ------------------------------------------------------------ consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 GACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAGCGGCATC 240 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 ------------------------------------------------------------ consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 AGCTCAAGGCATGTCAATCGGGATCAACTACGGGCAGATCGCGGACAACCTCCCTTCTCC 300 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 ------------------------------------------------------------ consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 GACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGCTCTACGACGC 360 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 ------------------------------------------------------------ consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 CGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCGTCGGCATCGG 420 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 ------------------------------------------------------------ consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 CAACGAGAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGGGTGCAGCAGCA 480 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 ------------------------------------------------------------ consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 CGTCCGCCCCTACCTCCCGAGCGCGCGCATCACCTGCATCACCGTCGGGAACGAGGTGTT 540 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 ------------------------------------------------------------ consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 CAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATGCAGTCCGTGTACAA 600 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 ------------------------------------------------------------ consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 CGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACGGCGCACTCCCTGGA 660 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 -------------CCCCGATCCATCCAAATTCCAAGACAAGCTCCTCGTGCTTTCCTGCC 47 consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 CATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCCGACGCCGTGCCGTA 720 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 TTGCCGCTGCGTCGCTCTCGCTCTCCACGGCACGCGCACGCAACGCGCGACGCGGTCCGG 107 consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 CATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTCCTGATCAACTGCTA 780 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 CGCTAGCTGAGCTGTGACTAGCCGAGCAAACACCCGCGGCTCGCCACCCCGACGGTTACC 167 consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 CCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAGTACGTCCTCTTCCA 840 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 GCCGCGCGCCACCCCCCACCCGCACTGCATAAAAACGCCCCACCTCCGCCGAATCGCCGA 227 consensus_11376#2 -------------------------------------------------------GCCTA 5 consensus_11376#0 GCCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGACAACATGCTGTACGC 900 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 TCCGCGCGCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACA 287 consensus_11376#2 TCCAAGTG----GAACGCAACAGAGGCGTCGTCTCC-----TCCTCTCCTCGACCTCTCG 56 consensus_11376#0 CCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACACCGACGTCGACGTGAA 960 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 CAACACGAGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTT 347 consensus_11376#2 CGGTTGGAGGTCTCGCGCGCGCGTGA-----GGCAACAAGTGC---CCG--TTCGA---T 103 consensus_11376#0 GATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGCCGGCGCGACGCCGGA 1020 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 CAACCACAGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGC 407 consensus_11376#2 CGACC--GGCAAGGATGGCGACGGCAGCGAGAGCGGCGTCG-----TGCACCCCCGCCGC 156 consensus_11376#0 GTACGCCGGGATCTA-CATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGG-ACG 1078 consensus_11376#3 -----CCGGGATCTA-CATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGG-ACG 53 consensus_11376#1 AGCCGTCGACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAG 467 consensus_11376#2 TTGCGCTGTGTTG----GTCATCCCCATCCTAGTCCTGATCATGGCAGGGCAAGTGCGAG 212 * ** * * **** *** ** * * * consensus_11376#0 CCGCTGAGGCCGTCGT--CGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACC 1136 consensus_11376#3 CCGCTGAGGCCGTCGT--CGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACC 111 consensus_11376#1 CGGCATCAGCTCAAGGCATGTCAATCGGGATCAAC---TACGGGCAGATCGCGGACAACC 524 consensus_11376#2 TCGCGGAGGCGC------TGTCCATCGGCGTGAAC---TACGGGCAGATCGCGAACAACA 263 ** ** * * **** * ** * * ** * ** * *** consensus_11376#0 TCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGG 1196 consensus_11376#3 TCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGG 171 consensus_11376#1 TCCCTTCTCCGACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGC 584 consensus_11376#2 TCCCGTCGCCGTCGCGGGTGTCGTGGCTGCTCCGGTCGCTCAAGATCAGCAAGGTGAAGC 323 ** * * * * * * ** * * * * * * consensus_11376#0 TCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACG-AATCGAAAAGCGCGCGA 1255 consensus_11376#3 TCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACG-AATCGAAAAGCGCGCGA 230 consensus_11376#1 TCTACGACGCCGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCG 644 consensus_11376#2 TGTTCGACGCCGACCCGCACGTCCTGCGCGCGTTCCTCGGCACGGGCGTGGAGTTCGTGG 383 * * ***** ** ** * ** * ** * * * ** ** ** consensus_11376#0 AAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGA 1315 consensus_11376#3 AAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGA 290 consensus_11376#1 TCGGCATCGGCAACGA-GAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGG 703 consensus_11376#2 TCGGCATCGGCAACGA-GGCCGTCCCGGCGATGGCCAGCCCCGCGGCGGCGGAGTCGTGG 442 *** ** * * ** ** * * * ** consensus_11376#0 GAGTA--TATACTTTTGTCC--AGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGC 1371 consensus_11376#3 GAGTA--TATACTTTTGTCC--AGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGC 346 consensus_11376#1 GTGCAGCAGCACGTCCGCCCCTACCTCC---CGAGCGCGCGCATCACCTGCATCACCGTC 760 consensus_11376#2 CTGCAGCTGCACGTGGTGCCGCACCTCCGCGCCGGCGCGCGCATCACCTGCATCACCGTC 502 * * ** * ** * ** * * * * ***** * * consensus_11376#0 TGCTG-AAGATTCCCATAGAAGAAAGCAAGGTAAGATAGTTGGAAGACAACCAGCATTTT 1430 consensus_11376#3 TGCTG-AAGATTCCCATAGAAGAAAGCAAGG----------------------------- 376 consensus_11376#1 GGGAACGAGGTGTTCAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATG 820 consensus_11376#2 GGCAACGAGGTGTTCAAGGGCAACGACACCGCCCTCCAGGCCAGCCTCCTCCCGGCGTTG 562 * ** * ** * * ** * consensus_11376#0 TATCTATGTAGTTTTTTTTTTGAGTGAATTTATCTATGTAGTGGATTCTTCATGTAGTAA 1490 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 CAGTCCGTGTACAACGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACG 880 consensus_11376#2 CGGTCCGTGCACCAGGCGCTCGGCGCGCTCGGCCTCCAGGGCCGCGTCAACGTCACCACC 622 consensus_11376#0 AATAGCTTGTTTTGGATTAAGAAATAGAGAAAATTCTTCAAATTTGGAAGATCTAGTAAA 1550 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 GCGCACTCCCTGGACATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCC 940 consensus_11376#2 GCGCACTCGCTGGACATCATGGGCGTGTCCTACCCGCCGTCCGCCGGTGCGTTCCACCCC 682 consensus_11376#0 TTCTGATACTATAGTAGTTTGCCATATTAGTAGGAATTAATCACCTATATGCTCATGCCA 1610 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 GACGCCGTGCCGTACATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTC 1000 consensus_11376#2 TCCGCCGCGCCGCACCTGCAGCCGTTCCTGGCCTTCCTGTCGGCGGCGAGGGCGCCGTTC 742 consensus_11376#0 CATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGG-ATGCTTCGGGAG 1669 consensus_11376#3 ----------------------------------------------G-ATGCTTCGGGAG 389 consensus_11376#1 CTGATCAACTGCTACCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAG 1060 consensus_11376#2 CTCATCAACTGCTACCCGTACTTCGCCTACAAGGACGACCCGGCGCGCGTGCCGCTGGAG 802 * *** * **** consensus_11376#0 CACAAGATCATTCAGATTTCAGAACGATAGGATCG-CCCATGCATTTAGTGTGTCTTTTT 1728 consensus_11376#3 CACAAGATCATTCAGATTTCAGAACGATAGGATCG-CCCATGCATTTAGTGTGTCTTTTT 448 consensus_11376#1 TACGTCCTCTTCCAG-CCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGA 1119 consensus_11376#2 TACGTGCTGTTCCAG-CCCAACGCCGGCGTCGTCGACCCGCGCACGAGGCTCGTCTACGA 861 ** * * *** * ** ** *** ** * ** consensus_11376#0 ATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAA-GT 1787 consensus_11376#3 ATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAA-GT 507 consensus_11376#1 CAACATGCTGTACGCCCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACAC 1179 consensus_11376#2 CAACATGCTGTACGCGCAGGTGGACGCCGTGTACGCGGCGATCCAGGCGATGGGGCACAC 921 * * * * * * * * ** * * ** * consensus_11376#0 AGAAACTAACG--AAAGCTTC-GAGAT--GATACAAGTCCAGATCTGTAATATACGACCT 1842 consensus_11376#3 AGAAACTAACG--AAAGCTTC-GAGAT--GATACAAGTCCAGATCTGTAATATACGACCT 562 consensus_11376#1 CGACGTCGACGTGAAGATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGC 1239 consensus_11376#2 GGACATCGACGTGAAGGTGTCGGAGACCGGGTGGCCGTCCCGCGGCGACCCCGACGAGGC 981 ** *** ** ** **** * * **** * * **** consensus_11376#0 TGGTTTGATAC-AATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGC 1901 consensus_11376#3 TGGTTTGATAC-AATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTAAAA 621 consensus_11376#1 CGGCGCGACGCCGGAGTACGCCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGAT 1299 consensus_11376#2 CGGCGCGACGCCCGAGAACGCCGGGACGTACATCGGGAACCTCCTCCGGAGGATCGAGAT 1041 ** ** * * * * * * * * * * consensus_11376#0 AAACTGTATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATT 1961 consensus_11376#3 AAA--------------------------------------------------------- 624 consensus_11376#1 GAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTT 1359 consensus_11376#2 GAAGCAGGGCACGCCGCTGCGGCCGCAGGCGCCCATCGACGTCTACGTCTTCGCGCTCTT 1101 ** consensus_11376#0 TGTAGTATTGTACATATTATGTGGCCCTTTTCGATGTGTAATAATTTTGATCTGAGAGTT 2021 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 CAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGA 1419 consensus_11376#2 CAACGAGAACCTCAAGCCCGGCCCGGCGTCGGAGCGGAACTACGGCCTCTTCTACCCCGA 1161 consensus_11376#0 TCAGGGCGTAGTACTCGTGCAGACAGGTGTGTGTATAGTACAGTAGTACATGTGTGATTA 2081 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 CGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAA 1479 consensus_11376#2 CGGCACGCCGGTCTA--------------------------------------------- 1176 consensus_11376#0 TAAAAGTTGCAAAATTGTAACCTAATTAATACCCCCTATGTTTCAACATTTTTACTTATT 2141 consensus_11376#3 ------------------------------------------------------------ consensus_11376#1 AAGCGCGCGAAAGGTAGGCGGTGTGAACTGTGAACTCGATCGTTTTTTTCTCCTTCAAAA 1539 consensus_11376#2 ------------------------------------------------------------ consensus_11376#0 ATCCCACACATATCAATAAGAAACCAA------------- 2168 consensus_11376#3 ---------------------------------------- consensus_11376#1 TCTGCAAAACTGTTACAAACTTTCTGCTGCATGTCACGCA 1579 consensus_11376#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||