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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1001 fasta sequence
[TCCTCCTCTACTACTCCAAGTCGTTTTTATCGAATTTTTAATGCGGATGACTAATCACTTCATCAGAAACACGATAGAACACGGCAATAACATATGGGTCGTTTCTTCCCTCCGTCCACCTACCGCTTGTTCCCCTAATTGATCTCTCCCCATGGCAACCCTCACGCTGCCGGCGACCGGAGCCGCCGCGCAACCCGGCCAGGAAGACCCAAGCGGGATCAAGAATCCTGGCGATGGTGCGGGAGATTCGAGCGGCATCGACTCCGGATGGGTTGTTCTGGGGAAATCTGACATAGTTCCGGCGGATTTGGCTGCCGCTGCCGCTGACGCCGGCCACCGACAGCTTGGGTTCTCGCCGTTACCGATGCTTCCAATTTGGGTGCAGATGGTGCTTGGAGGCGTAGTCTACACGGCCGTGCCGTTCTACAATAGGGCCAGGAAAGCCGAAGATGAGGTGACAAAAAATGTGGAAACTGCATTGGAGGTTGTGGAGCACGCCGCGGAGGTGACAGAGAAGTTAGCTGCTAATGTGGCCAATGCTCTA-CCAGAGAATGGTA-CCCTGCATAAGTTGG-CCGAGGAGGTTGAGTACA-TTGCTGAGA-TAGTGGAT-AAGGATGCAC-AGAAGGTTGAAA-TCATCATAAAGA-AGATTGAAGA-TGTCAGCAATCGGATAGACG-CTGC-TG-TGGAGCCTGTCATTGAAGAGCTCG-AAAA-GGAATTCAAACCATAGCCAAGCATCTGGT-GGATCAGAAGGCCC-AAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGT-ACATATATATTGTGATGCCCTAAAATGA--AACCA-CGCCGT-AG-TTCTAGCAAGACTAGGTGATG--GTGTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAAACAGTATATCGGATTGA-AACTTGAAAGAACATATTCTTCTGCTGTT------AAAAAAAAAAAAAAAA]
[+] EMBL AK120990 [TCCTCCTCTACTACTCCAAGTCGTTTTTATCGAATTTTTAATGCGGATGACTAATCACTTCATCAGAAACACGATAGAACACGGCAATAACATATGGGTCGTTTCTTCCCTCCGTCCACCTACCGCTTGTTCCCCTAATTGATCTCTCCCCATGGCAACCCTCACGCTGCCGGCGACCGGAGCCGCCGCGCAACCCGGCCAGGAAGACCCAAGCGGGATCAAGAATCCTGGCGATGGTGCGGGAGATTCGAGCGGCATCGACTCCGGATGGGTTGTTCTGGGGAAATCTGACATAGTTCCGGCGGATTTGGCTGCCGCTGCCGCTGACGCCGGCCACCGACAGCTTGGGTTCTCGCCGTTACCGATGCTTCCAATTTGGGTGCAGATGGTGCTTGGAGGCGTAGTCTACACGGCCGTGCCGTTCTACAATAGGGCCAGGAAAGCCGAAGATGAGGTGACAAAAAATGTGGAAACTGCATTGGAGGTTGTGGAGCACGCCGCGGAGGTGACAGAGAAGTTAGCTGCTAATGTGGCCAATGCTCTA CCAGAGAATGGTA CCCTGCATAAGTTGG CCGAGGAGGTTGAGTACA TTGCTGAGA TAGTGGAT AAGGATGCAC AGAAGGTTGAAA TCATCATAAAGA AGATTGAAGA TGTCAGCAATCGGATAGACG CTGC TG TGGAGCCTGTCATTGAAGAGCTCG AAAA GGAATTCAAACCATAGCCAAGCATCTGGT GGATCAGAAGGCCC AAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGT ACATATATATTGTGATGCCCTAAAATGA AACCA CGCCGT AG TTCTAGCAAGACTAGGTGATG GTGTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAAACAGTATATCGGA ]
[+] EMBL OSS1325A [ ATATGGGTCGTTTCTTCCCTCCGTCCACCTACCGCTTGTTCCCCTAATTGATCTCTCCCCATGGCAACCCTCACGCTGCCGGCGACCGGAGCCGCCGCGCAACCCGGCCAGGAAGACCCAAGCGGGATCAAGAATCCTGGCGATGGTGCGGGAGATTCGAGCGGCATCGACTCCGGATGGGTTGTTCTNGGGAAATCTGACATAGTTC ]
[+] EMBL OSR26381A [ CTCCGTCCACCTACCGCTTGTTCCCCTAATTGATCTCTCCCCATGGCAACCCTCACGCTGCCGGCGACCGGAGCCGCCGCGCAACCCGGCCAGGAAGACCCAAGCGGGATCAAGAATCCTGGCGATGGTGCGGGAGATTCGAGCGGCATCGACTCCGGATGGGTTGTTCTGGGGAAATCTGACATAGTTCCGGCGGATTTGGCTGCCGCTGCCGCTGACGCCGGCCACCGACAGCTTGGGTTCTCGCCGTTACCGATGCTTCCAATTTGGGTGCAGATGGTGCTTNGAGGCGTAGTCT ]
[+] EMBL BI805369 [ CAATGCTCTATCCGGAGTAT GTACCCCTGCATAAGTTGGCCCGAGGA GTTGAGTACACTTGCTGAGA TAGTGGAT AAGGATGCACAAGAAGGTTGAAA TCATCATAAAGA AGATTGAAGA TGTCAGC ATCGGATAGACG CTGC TGTTGGAGCCTGTCATTGAAGAGCTCG AAAA GGAATTCAAACCATAGCCAAGCATCTGGT GGATCAGAAGGCCC AAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGT ACATATATATTGTGATGCCCTAAAATGA AACCA CGCCGT AG TTCTAGC AGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAAACAGTATATCGGATTGA AACTTGAAAGAACATATTCTTCTGCTGTTGTTTCCAAAAAAAAAAAAAAAA]
[+] EMBL AU082708 [ TAAGTTGGCCCGAGGAGGTTGAGTACA TTGCTGAGACTAGTGGATCAAGGATGCAC AGAAGGTTGAAANTCATCATAAAGACAGATTGAAGATTGTCAGCAATCGGATAGACGCCTGCTTG TGGAGCCTGTCATTGAAGAGCTCG AAAACGGAATTCAAACCATAGCCAAGCATCTGGT GGATCAGAAGGCCC AAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGT ACATATATATTGTGATGCCCTAAAATGA AACCA CGCCGT AG TTCTAGCAAGACTAGGTGATG GTGTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAAACAGTATATCGGATTGA AACTTGAAAGAACATATTCTTCTGCTGTT AAAAAAAAActagttc]
[+] EMBL BI805449 [ CCGAGGAGGTTGAGTACA TT CTGAGA TAGTGGAT AAGGATGCAC AGAAGGTTGAAA TCATCATAAAGA AGATTGAAGA TGTCAGCCATCGGATAGACG CTGC TG TGGAGCCTGTCATTGAAGAGCTCGTAAAA GGAATTCAAACCATAGCC AGCATCTGGTGGGATCAGAAGGCCCTCAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGTGACATATATATTGTGATGCCCTAAAATGACCACCCACCCCCGTGAGTTTCTAGC AGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATNTAAAACAGTATATCGGATTGATAACTTGAAAAAAaaaa ]
consensusID : consensus_11386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence
[AGGGTGACAGAGAAGTTACTGCTAATGTGCCCATGCTCTACCAGAGAATGGTACCCTNGCATAAGTTGCCGAGGAGTTGAGTACACTTGCTGAGATATTGTATAAGGATGCC-CAGAAGGTT-GAAATCATCATAAAGAAGATTGAAGATGTCACC--ATCGGATAGACGCTGCTGTGGAGCCTGTCA-T-TGAAGAGCTCGAAAAGGAATT-CAACCATAGCCA-AGCATCTGGTGGATCAGAAGGCCCCAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGTACATATATATTGTGATGCCCTAAAATGAAACCCCNCCGTAGTTCTAGCNAGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGAAGCA-TCCTGTAATCTCGTTGTAAAATACCACTGAAGATCTAAACCAGTATATCGGATTGAAACTTGAAAGANCCAAAAAAAAAA]
[+] EMBL BM038559 [AGGGTGACAGAGAAGTTACTGCTAATGTGCCCATGCTCTACCAGAGAATGGTACCCTNGCATAAGTTGCCGAGGAGTTGAGTACACTTGCTGAGATATTGTATAAGGATGCC CAGAAGGTT GAAATCATCATAAAGAAGATTGAAGATGTCACC ATCGGATAGACGCTGCTGTGGAGCCTGTCA T TGAAGAGCTCGAAAAGGAATT CAACCATAGCCA AGCATCTGGTGGATCAGAAGGCCCCAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGTACATATATATTGTGATGCCCTAAAATGAAACCCCNCCGTAGTTCTAGCNAGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGAAGCA TCCTGTAATCTCGTTGTAAAATACCACTGAAGATCTAAACCAGTATATCGGATTGAAACTTGAAAGANCCAAAAAAAAAA]
[+] EMBL BI811513 [ ggTGGATAAGGATCCCACAGAAGTTTGGAAATCATCATAAAGAAGATTGAAGATGTCACCATATCGGATAGACCTTCCTGTGGAGCCTGTCACTGTGAAGAGCTCGAAAAGGAATTCCAACCATAGCCACAGCATCTGGTGGATCAGAAGGCCCCAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAGCATCTATTGTGTACATATATATTGTGATGCCCTAAAATGAAACCCC CCGTAGTTCTAGC AGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGAAGCACTCCTGTAATCTCGTTGTAAAATA CACTGAAGATCTAAACCAGTATATCGGATTGAAACTTGAAAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11386#0 TCCTCCTCTACTACTCCAAGTCGTTTTTATCGAATTTTTAATGCGGATGACTAATCACTT 60
consensus_11386#1 ------------------------------------------------------------
consensus_11386#0 CATCAGAAACACGATAGAACACGGCAATAACATATGGGTCGTTTCTTCCCTCCGTCCACC 120
consensus_11386#1 ------------------------------------------------------------
consensus_11386#0 TACCGCTTGTTCCCCTAATTGATCTCTCCCCATGGCAACCCTCACGCTGCCGGCGACCGG 180
consensus_11386#1 ------------------------------------------------------------
consensus_11386#0 AGCCGCCGCGCAACCCGGCCAGGAAGACCCAAGCGGGATCAAGAATCCTGGCGATGGTGC 240
consensus_11386#1 ------------------------------------------------------------
consensus_11386#0 GGGAGATTCGAGCGGCATCGACTCCGGATGGGTTGTTCTGGGGAAATCTGACATAGTTCC 300
consensus_11386#1 ------------------------------------------------------------
consensus_11386#0 GGCGGATTTGGCTGCCGCTGCCGCTGACGCCGGCCACCGACAGCTTGGGTTCTCGCCGTT 360
consensus_11386#1 ------------------------------------------------------------
consensus_11386#0 ACCGATGCTTCCAATTTGGGTGCAGATGGTGCTTGGAGGCGTAGTCTACACGGCCGTGCC 420
consensus_11386#1 ------------------------------------------------------------
consensus_11386#0 GTTCTACAATAGGGCCAGGAAAGCCGAAGATGAGGTGACAAAAAATGTGGAAACTGCATT 480
consensus_11386#1 ------------------------------------------------------------
consensus_11386#0 GGAGGTTGTGGAGCACGCCGCGGAGGTGACAGAGAAGTTAGCTGCTAATGTGGCCAATGC 540
consensus_11386#1 ----------------------AGGGTGACAGAGAAGTTA-CTGCTAATGTG-CCCATGC 36
**************** *********** ** ****
consensus_11386#0 TCTACCAGAGAATGGTACCCTG-CATAAGTTGGCCGAGGAGGTTGAGTACA-TTGCTGAG 598
consensus_11386#1 TCTACCAGAGAATGGTACCCTNGCATAAGTTG-CCGAGGAG-TTGAGTACACTTGCTGAG 94
********************* ********* ******** ********* ********
consensus_11386#0 ATAGTGGATAAGGATGCACAGAAGGTTGAAATCATCATAAAGAAGATTGAAGATGTCAGC 658
consensus_11386#1 ATATTGTATAAGGATGCCCAGAAGGTTGAAATCATCATAAAGAAGATTGAAGATGTCACC 154
*** ** ********** **************************************** *
consensus_11386#0 AATCGGATAGACGCTGCTGTGGAGCCTGTCATTGAAGAGCTCGAAAAGGAATTCAAACCA 718
consensus_11386#1 A-TCGGATAGACGCTGCTGTGGAGCCTGTCATTGAAGAGCTCGAAAAGGAATTCAA-CCA 212
* ****************************************************** ***
consensus_11386#0 TAGCCAAGCATCTGGTGGATCAGAAGGCCCAAAATTATTCTTGTTGTAAATATCGTTATT 778
consensus_11386#1 TAGCCAAGCATCTGGTGGATCAGAAGGCCCCAAATTATTCTTGTTGTAAATATCGTTATT 272
****************************** *****************************
consensus_11386#0 TTCTATTTTGTTCTTTCTAAGCATCTATTGTGTACATATATATTGTGATGCCCTAAAATG 838
consensus_11386#1 TTCTATTTTGTTCTTTCTAAGCATCTATTGTGTACATATATATTGTGATGCCCTAAAATG 332
************************************************************
consensus_11386#0 AAACCACGCCGTAGTTCTAGCAAGACTAGGTGATG--GTGTGTTGGATGCTCGAAGCTGA 896
consensus_11386#1 AAACCCCNCCGTAGTTCTAGCNAGACTAGGTGATGATGTGTGTTGGATGCTCGAAGCTGA 392
***** * ************* ************* ***********************
consensus_11386#0 AGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAAACAGTATATCGGATTGA 956
consensus_11386#1 AGCATCCTGTAATCTCGTTGTAAAATACCACTGAAGATCTAAACCAGTATATCGGATTGA 452
**************************** ************** ****************
consensus_11386#0 AACTTGAAAGAACATATTCTTCTGCTGTTAAAAAAAAAAAAAAAA 1001
consensus_11386#1 AACTTGAAAGANC---------------CAAAAAAAAAA------ 476
*********** * **********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||