cluster # 11408

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Oryza sativa
cluster # 11408 cluster # 11408 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11408#0 length = 564 sequences # 3
consensus_11408#1 length = 341 sequences # 1

consensus_11408#2 length = 320 sequences # 4
consensus_11408#3 length = 232 sequences # 1

consensusID : consensus_11408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 564
fasta sequence

                              [TCGTGGTCGCTAAACTACCGAACATGCACAAGGTCCGGATTTTTGGAATTAATGCTGGGAACTAGGCAGCAGGATCCTTCAGCAGACATCTACCTATCTTCCTTTCCAGTTCATCTGGCTCATCAGAGTATCAAGGAGTAGAGCTTAAATGTTGTTAGCTGATGGGTTGTGATCGTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTG-CTATATGCTTTGATACAAAAAAAAAAAAAAAAAACACTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTGCCCTTACCTAACAAAAGGGAAAATCCCGGGCCGTAAAATAAAATCCCCCTAAAAGGGAGCGGAATAAAAATAAATGGCCCGCGTTTTAAAAACGTGGGAAGGGAAAAACCCTGGGGTTACCCAAATTAAATCCCTTGGAAAAAAACCCCCTTTTCCCAACTGGGGAAAAAAAAAAAAAGCCCCCACCAAATCCC]

[+] EMBL CF336958             [TCGTGGTCGCTAAACTACCGAACATGCACAAGGTCCGGATTTTTGGAATTAATGCTGGGAACTAGGCAGCAGGATCCTTCAGCAGACATCTACCTATCTTCCTTTCCAGTTCATCTGGCTCATCAGAGTATCAAGGAGTAGAGCTTAAATGTTGTTAGCTGATGGGTTGTGATCGTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTG CTATATGCTTTGATACAAAAAAAAAAAAAAAAAACACTGTC                                                                                                                                                                                                                                                                           ]
[-] EMBL CF317495             [ CGTGGTCGCTAAACTACCGAACATGCCCAAGGTCCGGATTTTTGGAATTAATGCTGGGAACTAGGCAGCAGGATCCTTCAGCAGACATCTACCTATCTTCCTTTCCAGTTCATCTGGCTCATCAGAGTATCAAGGAGTAGAGCTTAAATGTTGTTAGCTGATGGGTTGTGATCGTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTGACTATATGCTTTGATACAAAAAA                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF316268             [                                                                                                                                                       TTGTTAGCTGATGGGTTGTGATCGTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAAACTCTTAACGCTG CTATATGCTTTGATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTGCCCTTACCTAACAAAAGGGAAAATCCCGGGCCGTAAAATAAAATCCCCCTAAAAGGGAGCGGAATAAAAATAAATGGCCCGCGTTTTAAAAACGTGGGAAGGGAAAAACCCTGGGGTTACCCAAATTAAATCCCTTGGAAAAAAACCCCCTTTTCCCAACTGGGGAAAAAAAAAAAAAGCCCCCACCAAATCCC]




>consensus_11408#0
TCGTGGTCGCTAAACTACCGAACATGCACAAGGTCCGGATTTTTGGAATTAATGCTGGGA
ACTAGGCAGCAGGATCCTTCAGCAGACATCTACCTATCTTCCTTTCCAGTTCATCTGGCT
CATCAGAGTATCAAGGAGTAGAGCTTAAATGTTGTTAGCTGATGGGTTGTGATCGTTGTA
TAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTG
TAGACTCTTAACGCTGCTATATGCTTTGATACAAAAAAAAAAAAAAAAAACACTGTCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CCCTTGTTTGCCCTTACCTAACAAAAGGGAAAATCCCGGGCCGTAAAATAAAATCCCCCT
AAAAGGGAGCGGAATAAAAATAAATGGCCCGCGTTTTAAAAACGTGGGAAGGGAAAAACC
CTGGGGTTACCCAAATTAAATCCCTTGGAAAAAAACCCCCTTTTCCCAACTGGGGAAAAA
AAAAAAAAGCCCCCACCAAATCCC

consensusID : consensus_11408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [TTGTTAGCTGATGGGTTGTGATCGTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGTCAGTTGCTGCATGTAGAGTCTTGTTTTCAGAACAATACCTTCATATACTTGTTTTCAGAACCATACTTGTATGGTTCTCCAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCTTACCAAAGGGCAAATTCGGGGCCGTTAAATTCAATTCCCCCT]

[+] EMBL CF320255             [TTGTTAGCTGATGGGTTGTGATCGTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGTCAGTTGCTGCATGTAGAGTCTTGTTTTCAGAACAATACCTTCATATACTTGTTTTCAGAACCATACTTGTATGGTTCTCCAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCTTACCAAAGGGCAAATTCGGGGCCGTTAAATTCAATTCCCCCT]




>consensus_11408#1
TTGTTAGCTGATGGGTTGTGATCGTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGC
TGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTGCTATATGCTTTGATA
CAAATATCTGTCAGTTGCTGCATGTAGAGTCTTGTTTTCAGAACAATACCTTCATATACT
TGTTTTCAGAACCATACTTGTATGGTTCTCCAAGATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCTT
ACCAAAGGGCAAATTCGGGGCCGTTAAATTCAATTCCCCCT

consensusID : consensus_11408#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 320
fasta sequence

                              [CCNTCCACCAGACCATCTACCCTATTTCCCTTTCCAGGTTCATCTGGGCTCACCAGAGGTATCAAGNAGTAAAGCTTAAATGTTGTTAGCTGATGGGTTGTGATC-GTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGTCA-GTTGCTGCAAAAAAATTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAA]

[+] EMBL AU166448             [CCNTCCACCAGACCATCTACCCTATTTCCCTTTCCAGGTTCATCTGGGCTCACCAGAGGTATCAAGNAGTAAAGCTTAAATGTTGTTNGCTGATGGGTTGTGATCGGTTGTAAAAAAANATGCTCAAAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGTCAGGTTGCTGCAAAAA                                                                                            ]
[+] EMBL CF332343             [                                                                  gAGTAGAGCTTATATGTTGTTAGCTGATGGGTTGTGATC GTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGTCA GTTGCTGCAAAAAAA                                                                                          ]
[+] EMBL CF322187             [                                                                                  TTGTTAGCTGATGGGTTGTGATC GTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGTCA GTTGCTGCAAAAATTTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                                    ]
[+] EMBL CF316957             [                                                                                   TGTTAGCTGATGGGTTGTGATC GTTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGTCA GTTGCTGCAAAAAAA    AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAA]




>consensus_11408#2
CCNTCCACCAGACCATCTACCCTATTTCCCTTTCCAGGTTCATCTGGGCTCACCAGAGGT
ATCAAGNAGTAAAGCTTAAATGTTGTTAGCTGATGGGTTGTGATCGTTGTATAGAGAGAT
GCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTAGACTCTT
AACGCTGCTATATGCTTTGATACAAATATCTGTCAGTTGCTGCAAAAAAATTTTATAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA
AAGAAAAAAAAAAAAAAAAA

consensusID : consensus_11408#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [GTGATCGTTGTATATAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTGGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGACACTTGCTGCATGTCAAGTCTTGTTTTCACAACAATACCTTCATATACTTGTTTTCACAACCATACTTGTATGGTTCTCCAAGATATGAACACAGTGCGGATCGCGTCAAACCCACAG]

[+] EMBL CF316125             [GTGATCGTTGTATATAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAATTCTGTGGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGACACTTGCTGCATGTCAAGTCTTGTTTTCACAACAATACCTTCATATACTTGTTTTCACAACCATACTTGTATGGTTCTCCAAGATATGAACACAGTGCGGATCGCGTCAAACCCACAG]




>consensus_11408#3
GTGATCGTTGTATATAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGT
ACACGAATTCTGTGGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGACACTTG
CTGCATGTCAAGTCTTGTTTTCACAACAATACCTTCATATACTTGTTTTCACAACCATAC
TTGTATGGTTCTCCAAGATATGAACACAGTGCGGATCGCGTCAAACCCACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11408#1      ------------------------------------------------------------
consensus_11408#3      ------------------------------------------------------------
consensus_11408#0      TCGTGGTCGCTAAACTACCGAACATGCACAAGGTCCGGATTTTTGGAATTAATGCTGGGA 60
consensus_11408#2      ------------------------------------------------------------
                                                                                   

consensus_11408#1      ------------------------------------------------------------
consensus_11408#3      ------------------------------------------------------------
consensus_11408#0      ACTAGGCAGCAGGATCCTTCAGCAGAC-ATCTACC-TATCTTCCTTTCCAG-TTCATCTG 117
consensus_11408#2      --------------CCNTCCACCAGACCATCTACCCTATTTCCCTTTCCAGGTTCATCTG 46
                                                                                   

consensus_11408#1      ------------------------------------TTGTTAGCTGATGGGTTGTGATCG 24
consensus_11408#3      -----------------------------------------------------GTGATCG 7
consensus_11408#0      G-CTCATCAGAG-TATCAAGGAGTAGAGCTTAAATGTTGTTAGCTGATGGGTTGTGATCG 175
consensus_11408#2      GGCTCACCAGAGGTATCAAGNAGTAAAGCTTAAATGTTGTTAGCTGATGGGTTGTGATCG 106
                                                                            *******

consensus_11408#1      TTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAA 84
consensus_11408#3      TTGTATATAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAA 67
consensus_11408#0      TTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAA 235
consensus_11408#2      TTGTATAGAGAGATGCTCAGAGGCTGAAAACGATGCTGCTGTATATCTGATGTACACGAA 166
                       ******* ****************************************************

consensus_11408#1      TTCTGTAGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGTCAGTTGCTGCATG 144
consensus_11408#3      TTCTGTGGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGACACTTGCTGCATG 127
consensus_11408#0      TTCTGTAGACTCTTAACGCTGCTATATGCTTTGATACAAAAA------AAAAAAAAAAAA 289
consensus_11408#2      TTCTGTAGACTCTTAACGCTGCTATATGCTTTGATACAAATATCTGTCAGTTGCTGCAAA 226
                       ****** ********************************* *      *        *  

consensus_11408#1      TAGAGTCTTGTTTTCAGAACAATACCTTCATATACTTGTTTTCAGAACCATACTTGTATG 204
consensus_11408#3      TCAAGTCTTGTTTTCACAACAATACCTTCATATACTTGTTTTCACAACCATACTTGTATG 187
consensus_11408#0      ACAC-------TGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 342
consensus_11408#2      AAAA-------TTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 279
                                  * * * ** ** *     * * *         * **  * *     *  

consensus_11408#1      GTTCTCCAAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 264
consensus_11408#3      GTTCTCCAAGATATGAACACAGTGCGGATCGCGTCAAACCCACAG--------------- 232
consensus_11408#0      AAAAAAAAAAAAAAAAAACCCTTGTTTGCCCTTACCTAACAAAAGGGAAAATCCCGGGCC 402
consensus_11408#2      AAAAATAAAAAAAAAAAAAAAAAG---------AAAAAAAAAAAAAAAAA---------- 320
                              ** * *  **                    *   * *                

consensus_11408#1      AAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCTTACCAAAGGGCAAATTCGGGGCCGT 324
consensus_11408#3      ------------------------------------------------------------
consensus_11408#0      GTAAAATAAAATCCCCCTAAAAGGGAGCGGAATAAAAATAAATGGCCCGCGTTTTAAAAA 462
consensus_11408#2      ------------------------------------------------------------
                                                                                   

consensus_11408#1      TAAATTCAATTCCCCCT------------------------------------------- 341
consensus_11408#3      ------------------------------------------------------------
consensus_11408#0      CGTGGGAAGGGAAAAACCCTGGGGTTACCCAAATTAAATCCCTTGGAAAAAAACCCCCTT 522
consensus_11408#2      ------------------------------------------------------------
                                                                                   

consensus_11408#1      ------------------------------------------
consensus_11408#3      ------------------------------------------
consensus_11408#0      TTCCCAACTGGGGAAAAAAAAAAAAAGCCCCCACCAAATCCC 564
consensus_11408#2      ------------------------------------------