These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11416#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 692 fasta sequence [CTCCCTGATGCAATCCACTCAAGGAGATGATCCCTCCTGGTGCTCTTGTTATGCTCACCCCACTTATCGTCGGAATTCTGTTCGGCGTCGAGACCCTCTCTGGAGTCCTTGCTGGTGCTCTCGTCTCTGGTGTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGACAATGCAAAGAAATACA-TTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC-TTCGCCACCCA-CGGTGGT-ATCCTCTTCAAGTT-GTTCTAAACCGGCGACGTTGGGTGTAACA-AAGGCCA-TAGTTTT---GTTGGGG---ATGAG-CAAAATATGTAGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCA-TTGTC-TACTTGATTTCCCA-TTTTTGTTCTA-GTT-CCAGGTT-CCAACCTTGTGTTTTGATCCCAGAATTTTCTCTGGTCCTCTTTAGCTTTTGTCTCCAGCTGCATAAGTCATCCTGTGGCACAGTGAACA-AGGAGCATTGGAAAATTTGCCATTTTCTAGCGATAAAATGATGAGGATGATGAAAAAAA] [+] EMBL BI808574 [CTCCCTGATGCAATCCACTCAAGGAGATGATCCCTCCTGGTGCTCTTGTTATGCTCACCCCACTTATCGTCGGAATTCTGTTCGGCGTCGAGACCCTCTCTGGAGTCCTTGCTGGTGCTCTCGTCTCTGGTGTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGAC ATGCAAAGAAATACACTTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGC GCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGCCACCCA CGGTGGT ATCCTCTTCAAGTT GTTCTAAACCGGCGACGTTGGGTGTAAC AAGGCCA TAGTTTT GTTGGGG ATGAG CAAAATATGTAGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCATTTGTC TAaaaaaaaa ] [+] EMBL OSS10468A [ TGTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGACAATGCAAAGAAATACA TTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGT CCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGGCACCCA CGGTGGT ATCCTCTTCAAGTT GTTCTAAACCGGCGGCGTTGGGTGTAACA AAGGGCATTAGTTTTTTNTTTGGGGGGNTTGNGCCAAAATATGTAGGCTATTTTGTCATGATTTGCTCCTTGAGTTGNTGGCTCCA TTGTCTTACTTGNTTTCCCA TTTTTGTTCTAGGTTCCCGGGTTCCCAAC ] [+] EMBL OSS10477A [ GTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGACAATGCAAAGAAATACA TTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGCCACCCA CGGTGGT ATCCTCTTCAAGTT GTTCTAAACCGGCGACGTTGGGTGTAACA AAGGNCA TAGTTTT GTTGGGG ATGAG CAAAATATGTAGACTATTTTGTCATGATTT ] [+] EMBL OSS10149A [ GTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGACAATGCAAAGAAATACA TTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGCCACCCA CGGTGGTAATCCTCTTCAAGTT GTTCTAAACCGGCGACGTTGGGTGTAACA AAGGCCA TAGTTTT NTTGGGG ATGAG CAAAATATGTAGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCC ] [+] EMBL BE228418 [ gagGGAG TTCAGAGCATGCCAGGA CCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCANGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGCCACCCA CGGTGGT ATCCTCTTCAAGTT GTTCTAAACCGGCGACGTTGGGTGTNACA AAGGCCA TAGTTTT GTTGGGG ATGAG CAAAATATGTNGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCA TTGTC TACTTGATTTCCCA TTTTTGTTCTA GTT CCAG ] [+] EMBL CA999609 [ TCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTC TTCGCCACCCA CGGTGGT ATCCTCTTCAAGTT GTTCTAAACCGGCGACGTTGGGTGTAACA AAGGCCA TAGTTTT GTTGGGG ATGAG CAAAATATGTAGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCA TTGTC TACTTGATTTCCCA TTTTTGTTCTA GTT CCAGGTT CCAACCTTGTGTTTTGATCCCAGAATTTTCTCTGGTCCTCTTTAGCTTTTGTCTCCAGCTGCATAAGTCATCCTGTGGCACAGTGAACA AGGAGCATTGGAAAATTTGCCATTTTCTAGCGATAAAATGATGAGGATGATGA ] [+] EMBL BI812671 [ ATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTCGTTCGCCACCCACCGGTGGT ATCCTCTTCAAGTTGGTTCTAAACCGGCGAC TTGGGTGTAACACAAGGCCA TA TTTT TTGGGG ATGA CCAAATATGTAGACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCC TTGTC TACTTGATTTCCCACTTTTTGTTCTA GTT CCCGGTT CCCACCTTGTGTTTTGATCCCAGAATTTTCTCTGGTCCTCTTTAGCTTTTGTCTCCAGCTGCATAAGTCATCCTGTGGCCCAGTGAACACAGGAGCCTTGGAAAATTTGCCCTTTTCTAGCGATAAAATGATGAGGATGAAAAAAAAAA] [+] EMBL AU069824 [ ATGACTCCA TTGTC TACTTGATTTCCCA TTTTTTTNCTA GTT CCAGGTT CCAACCTTGTGTTTTGATCCCAGAATTTNCTCTGGTCCTCTTTAGCTTTTGTNTCCAGCTGCATAAGTCATCCTGTGGCACAGTGAACA AGGAGCATTGGAAAATTTGCCATTTTC ] consensusID : consensus_11416#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [AGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTDRRVCCCTTCTTHDVCACCCACGGTGGTAATCCTCTTCAAGTTGTTCTAAACCSGCGACGTTGGGTGTTACAAAGGCCATAGTTTTGTTTGGGGATGAGCAAAATATGTAGACTATWTTTGTCATGAAWTTGCTCCCTGAGAKTGATGACTCCAYWTGTCTACACTGARWTTCCCAWATTTTGTKTSTAGAGTCCMSRGKTCCMACCTTGTGTKTTTGADTMCCMSAAATTTTCTCTCGGG] [+] EMBL AA752682 [AGCATGCCAGGACCCTTGGTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTDRRVCCCTTCTTHDVCACCCACGGTGGTAATCCTCTTCAAGTTGTTCTAAACCSGCGACGTTGGGTGTTACAAAGGCCATAGTTTTGTTTGGGGATGAGCAAAATATGTAGACTATWTTTGTCATGAAWTTGCTCCCTGAGAKTGATGACTCCAYWTGTCTACACTGARWTTCCCAWATTTTGTKTSTAGAGTCCMSRGKTCCMACCTTGTGTKTTTGADTMCCMSAAATTTTCTCTCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11416#0 CTCCCTGATGCAATCCACTCAAGGAGATGATCCCTCCTGGTGCTCTTGTTATGCTCACCC 60 consensus_11416#1 ------------------------------------------------------------ consensus_11416#0 CACTTATCGTCGGAATTCTGTTCGGCGTCGAGACCCTCTCTGGAGTCCTTGCTGGTGCTC 120 consensus_11416#1 ------------------------------------------------------------ consensus_11416#0 TCGTCTCTGGTGTTCAGATTGCCATCTCCGCATCAAACACTGGCGGTGCTTGGGACAATG 180 consensus_11416#1 ------------------------------------------------------------ consensus_11416#0 CAAAGAAATACATTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTGGTCCCAAAGGTT 240 consensus_11416#1 ------------------------------AGCATGCCAGGACCCTTGGTCCCAAAGGTT 30 ****************************** consensus_11416#0 CCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTT 300 consensus_11416#1 CCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTT 90 ************************************************************ consensus_11416#0 CAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCC 360 consensus_11416#1 CAGGACCCTCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTD-RRVC 149 ****************************************************** * consensus_11416#0 CCTTCTTCGCCACCCACGGTGGTA-TCCTCTTCAAGTTGTTCTAAACCGGCGACGTTGGG 419 consensus_11416#1 CCTTCTTHDVCACCCACGGTGGTAATCCTCTTCAAGTTGTTCTAAACCSGCGACGTTGGG 209 ******* ************** *********************** *********** consensus_11416#0 TGTAACAAAGGCCATAGTTTTGTT-GGGGATGAGCAAAATATGTAGACTATTTT-GTCAT 477 consensus_11416#1 TGTTACAAAGGCCATAGTTTTGTTTGGGGATGAGCAAAATATGTAGACTATWTTTGTCAT 269 *** ******************** ************************** ** ***** consensus_11416#0 GA-TTTGCTCCTTGAG-TTGATGACTCCATT-GTCTAC--TTGATTTCCCAT-TTTTGTT 531 consensus_11416#1 GAAWTTGCTCCCTGAGAKTGATGACTCCAYWTGTCTACACTGARWTTCCCAWATTTTGTK 329 ** ******* **** *********** ****** * ****** ****** consensus_11416#0 CT---AGTTCCAGGTTCCAACCTTGTGTTTT--GATCCCAGAA-TTTTCTCTGGTCCTCT 585 consensus_11416#1 TSTAGAGTCCMSRGKTCCMACCTTGTGTKTTTGADTMCCMSAAATTTTCTCTCGGG---- 385 *** * * *** ********* ** * ** ** ******** * consensus_11416#0 TTAGCTTTTGTCTCCAGCTGCATAAGTCATCCTGTGGCACAGTGAACAAGGAGCATTGGA 645 consensus_11416#1 ------------------------------------------------------------ consensus_11416#0 AAATTTGCCATTTTCTAGCGATAAAATGATGAGGATGATGAAAAAAA 692 consensus_11416#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||