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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1189 fasta sequence
[GCGAGTCCGCCCGCCGCCCGAGCTTATCTCCATCCTACGAGCAGCGGCGCCGGCTCCGGCGTCGGCGTCCCCCTGCTCCTTCCGCCGCCTCCTCGCTCTCGCCGGCCCGTCCCTGGGGAATGCCCAGCTGAATTCAATGGCTCAAGTTACTGCGACCGCGAATGCTCGGGTGCTCGGTTTTCCTGCCGCCAGCCGCCATGGTGGCCCTGTAGGATCGCGTGCTGGGCCGGCGTTTCTGAATCTGCGTGCTCCCGCACTTCGTCATGACAGTAAAAAGCATCCTTTGAGAGTTGGTGCTGCCTCTTCATTATTCACAAAGTATGATCCTATCAAAGGCATCAAACCATTGCTGTCAATTGACAAGTTACGTCCTAGAACTCAAGTT-GGCTGTCGAGCATCTTT-ATCATC-ATTCAGCTTCCCTG-AGTTGGAGACCAAACC-TAGATGG-TGG-TGGAGGACCTTAGCGTGTGTCCCCTATCTTCTGCCGCTGCACAACATGT-GGTCCTTTGCAGATGCTGTGTACCAGCTTCATCCATACTTGCAGCAGTTT-GGGTTGTTCTATGCATTCATCGACA-CAATGGCGTTAGTCCCAGGATGGCTCTTTCTGATGATCTTCATGACCGTCTACTTCTTTGTGGTCAGGCGGAAGTGGTTGCCACACTTCTTGCGGTATCACGTC-ATATT-GGCT-ATTCTCCTTGATACTGGTTCTCAAGCTCTGGCGACCATGTGCAACTGGAATCCAAGCATTGTTTATCAGGGTAAACCAATGGTGTTTTTCTGGATGACGATTGCCTTCATTCAGATATCCACAGTTCTTGAGTGCATGAGGTGTGCTCTGGCAGGCATGTATCCCAGCGTTCCGTTTGTATCTCAAACGGCTTTCATCCACTCTGATATGAGTATGTTCAGGTAGTTGGTTAGTGCAATATGCATCTTTGAATATAAGAAGCATTAAGGGATTTTTATACGAGAGATTTG-AAACTGCTGAGACAGTAAAATGTTGGGAATTATGAGGTACAAGAGGTGGGGATGCAAGGGGATGAAATCAGAGGCAATGCTTATTTGCAGTGTTGGCACTTTTAATATTTGTGGCCTGGAGAGTTACTTGATATATTGTTTAGGTTGTGTTTTGTTTGATTTTGAATAGGATGACCATTTTGAAGACTGTGAGTTCAGTTTTAAAAAAAAAAAA]
[+] EMBL CF315701 [GCGAGTCCGCCCGCCGCCCGAGCTTATCTCCATCCTACGAGCAGCGGCGCCGGCTCCGGCGTCGGCGTCCCCCTGCTCCTTCCGCCGCCTCCTCGCTCTCGCCGGCCCGTCCCTGGGGAATGCCCAGCTGAATTCAATGGCTCAAGTTACTGCGACCGCGAATGCTCGGGTGCTCGGTTTTCCTGCCGCCAGCCGCCATGGTGGCCCTGTAGGATCGCGTGCTGGGCCGGCGTTTCTGAATCTGCGTGCTCCCGCACTTCGTCATGACAGTAAAAAGCATCCTTTGAGAGTTGGTGCTGCCTCTTCATTATTCACAAAGTATGATCCTATCAAAGGCATCAAACCATTGCTGTCAATTGACAAGTTACGTCCTAGAACTCAAGTT GGCTGTCGAGCATCTTT ATCATC ATTCAGCTTCCCTG AGTTGGAGACCAAACC TAGATGGNTGG TGGAGGACCTTAGCGTGTGTCCCCTATCTTCTGCCGCTGCACAACATGT GGTCCTTTGCAGATGCTGTGTACCAGCTTCATCCATACTTGCAGCAGTTTGGGGTTGTTCTATGCATTCATCGACACCAATGGCGTTAGTCCCAGGATGGCTCTTTCTGATGATCTTCATGACCGTCTACTTCTTTGTGGTCAGGCGGAAGTGGTTGCCACACTTCTTGCGGTATCACGTC ATATT GGCT ATTCCCCTTGATACTGGTTCTCAA ]
[+] EMBL OSR19061A [ GCCCGCCGCCCGAGCTTATCTCCATCCTACGAGCAGCGGCGCCGGCTCCGGCGTCGGCGTCCCCCTGCTCCTTCCGCCGCCTCCTCGCTCTCGCCGGCCCGTCCCTGGGGAATGCCCAGCTGAATTCAATGGCTCAAGTTACTGCGACCGCGAATGCTCGGGTGCTCGGTTTTCCTGCCGCCAGCCGCCATGGTGGCCCTGTAGGATCGCGTGCTGGGCCGGCGTTTCTGAATCTGCGTGCTCCCGCACTTCGTCATGACAGTAAAAAGCATCCTTTGAGAGTTGGTGCTGCCTCTTCATTATTCACAAAGTATGATCCTATCAAAGGCATCAAACCATTGCTGTCAATTGACAAGTTACGTCCTAGAACTCAAGTTGGGCTGTCGAGCATCTTT ATCATC ATTCAGCTTCCCTG AGTTGGAGACCAAACCTTAGATGG TGG TGGAGGACCTTAGCGTGTGTCCCCTATCTTCTGCCGCTGCACAACATGTGGGTCCTTTGCAGATGCTGTGTACCAGCTTCATCCATACTTGCAGCAGTTT GGGTTGTTCTATGCATTCATCGACA CAATGGNGTTAGTCCCAGGATGGCTCTTTCTGATGATCTTCATNACCGTCTACTTCTTTGTGGTCAGGCGGAAGTGGTTG CAAACTTCTTGCGGGATCAAGTCAATATTGGGGTAATTCTCCTT ]
[+] EMBL AK071805 [ CCGAGCTTATCTCCATCCTACGAGCAGCGGCGCCGGCTCCGGCGTCGGCGTCCCCCTGCTCCTTCCGCCGCCTCCTCGCTCTCGCCGGCCCGTCCCTGGGGAATGCCCAGCTGAATTCAATGGCTCAAGTTACTGCGACCGCGAATGCTCGGGTGCTCGGTTTTCCTGCCGCCAGCCGCCATGGTGGCCCTGTAGGATCGCGTGCTGGGCCGGCGTTTCTGAATCTGCGTGCTCCCGCACTTCGTCATGACAGTAAAAAGCATCCTTTGAGAGTTGGTGCTGCCTCTTCATTATTCACAAAGTATGATCCTATCAAAGGCATCAAACCATTGCTGTCAATTGACAAGTTACGTCCTAGAACTCAAGTT GGCTGTCGAGCATCTTT ATCATC ATTCAGCTTCCCTG AGTTGGAGACCAAACC TAGATGG TGG TGGAGGACCTTAGCGTGTGTCCCCTATCTTCTGCCGCTGCACAACATGT GGTCCTTTGCAGATGCTGTGTACCAGCTTCATCCATACTTGCAGCAGTTT GGGTTGTTCTATGCATTCATCGACA CAATGGCGTTAGTCCCAGGATGGCTCTTTCTGATGATCTTCATGACCGTCTACTTCTTTGTGGTCAGGCGGAAGTGGTTGCCACACTTCTTGCGGTATCACGTC ATATT GGCT ATTCTCCTTGATACTGGTTCTCAAGCTCTGGCGACCATGTGCAACTGGAATCCAAGCATTGTTTATCAGGGTAAACCAATGGTGTTTTTCTGGATGACGATTGCCTTCATTCAGATATCCACAGTTCTTGAGTGCATGAGGTGTGCTCTGGCAGGCATGTATCCCAGCGTTCCGTTTGTATCTCAAACGGCTTTCATCCACTCTGATATGAGTATGTTCAGGTAGTTGGTTAGTGCAATATGCATCTTTGAATATAAGAAGCATTAAGGGATTTTTATACGAGAGATTTG AAACTGCTGAGACAGTAAAATGTTGGGAATTATGAGGTACAAGAGGTGGGGATGCAAGGGGATGAAATCAGAGGCAATGCTTATTTGCAGTGT ]
[+] EMBL CF196820 [ GAGCTTATCTCCATCCTACGAGCAGCGGCGCCGGCTCCGGCGTCGGCGTCCCCCTGCTCCTTCCGCCGCCTCCTCGCTCTCGCCGGCCCGTCCCTGGGGAATGCCCAGCTGAATTCAATGGCTCAAGTTACTGCGACCGCGAATGCTCGGGTGCTCGGTTTTCCTGCCGCCAGCCGCCATGGTGGCCCTGTAGGATCGCGTGCTGGGCCGGCGTTTCTGAATCTGCGTGCTCCCGCACTTCGTCATGACAGTAAAAAGCATCCTTTGAGAGTTGGTGCTGCCTCTTCATTATTCACAAAGTATGATCCTATCAAAGGCATCAAACCATTGCTGTCAATTGACAAGTTACGTCCTAGAACTCAAGTT GGCTGTCGAGCATCTTT ATCATC ATTCAGCTTCCCTG AGTTGGAGACCAAACC TAGATGG TGG TGGAGGACCTTAGCGTGTGTCCCCTATCTTCTGCCGCTGCACAACATGT GGTCCTTTGCnnat ]
[+] EMBL C91664 [ GCAGCGGCGCCGGCTCCGGNGTCGGCGTCCCCCTGCTCCTTCCGCCGCCTCCTCGCTCTCGCCGGCCCGTCCCTGGGGAATGCCCAGCTGAATTCAATGGCTCAAGTTACTGCGACCGCGAATGCTCGGGTGCTCGGTTTTCCTGCCGCCAGCCGCCATGGTGGCCCTGTAGGATCGCGTGCTGGGCCGGCGTTTCTGAATCTGCGTACTCCCGCACTTCGTCATGACAGTTAAAAGCATCCTTTGAGAGTTGGTGCTGCCTCTTCATTATTCACAAAGTATGATCCTATCAAAGGCATCAAACCATTGCTGT AATTGACAAGTTACGTCCTAAAACTCAAGTT GGCTGTTGAGCATCTTTAATCAACAATTAANTTTCCCTGAAGTTGGAGACCAAA C TANATG ]
[+] EMBL CF310726 [ CGACCGCGAATGCTCGGGTGCTCGGTTTTCCTGCCGCCAGCCGCCATGGTGGCCCTGTAGGATCGCGTGCTGGGCCGGCGTTTCTGAATCTGCGTGCTCCCGCACTTCGTCATGACAGTAAAAAGCATCCTTTGAGAGTTGGTGCTGCCTCTTCATTATTCACAAAGTATGATCCTATCAAAGGCATCAAACCATTGCTGTCAATTGACAAGTTACGTCCTAGAACTCAAGTT GGCTGTCGAGCATCTTT ATCATC ATTCAGCTTCCCTG AGTTGGAGACCAAACC TAGATGG TGGNTGGAGGACCTTAGCGTGTGTCCCCTATCTTCTGCCGCTGCACAACATGT GGTCCTTTGCAGATGCTGTGTACCAGCTTCATCCATACTTGCAGCAGTTT GGGTTGTTCTATGCATTCATCGACA CAATGGCGTTAGTCCCAGGATGGCTCTTTCTGATGATCTTCATGACCGTCTACTTCTTTGTGGTCAGGCGGAAGTGGTTGCCACACTTCTTGCGGTATCACGTC ATATT GGCT ATTCTCCTTGATACTGGTTCTCAAGCTCTGGCGACCATGTGCAACTGGAA ]
[-] EMBL CF315702 [ GCGGAAGTGGTTGCCACACTTCTTGCGGTATCACGTC ATATT GGCT ATTCCCCTTGATACTGGTTCTCAAGCTCTGGCGACCATGTGCAACTGGAATCCAAGCATTGTTTATCAGGGTAAACCAATGGTGTTTTTTTGGATGACGATTGCCTTCATTCAGATATCCACAGTTCTCGAGTGCATGAGGTGTGCTCTGGCAGGCATGTATCCCAGCGTTCCGTTTGTATCTCAAACGGCTTTCATCCACTCTGATATGAGTATGTTCAGGTAGTTGGTTAGTGCAATATGCATCTTTGAATATAAGAAGCATTAAGGGATTTTTATACGAGAGATTTGAAAACTGCTGAGACAGTAAAATGTT GGAATTATGAGATACAAGAGGTGGGGATGCAAGGGGATGAAATCAGAGGCAATGCTTATTTGCAGTGTTGGCACTTTTAATATTTGTGGCCTGGAGAGTTACTTGATATATTGTTTAGGTTGTGTTTTGTTTGATTTTGAATAGGATGACCATTTTGAAGACTGTGAGTTCAGTTTTAAAAAAAAAAAA]
consensusID : consensus_11419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 487 fasta sequence
[TGCTCTGGCAGGCATGTATCCCAGCGTTCCGTTTGTATCTCCAAACGGCTTTCATCCACTCTGANATGAGTATGTTCAGGTAGTTGGTTAGTGCNATATGCATCTTTGAATATAAGAAGCATTAAGGGATTTTTATACGAGAGATTTGAAAACTGCTGAGACAGTAAAATGTTGGGAATTATGAGATACAAGAGGTGGGGATGCAAGGGGATGAAATCAGAGGCAATGCTTATTTGCAGTGCTGGCACTTCTAATATTTGTGGCCTGGAGAGTTACTTGATATATTGTTTAGGTTGTGTTTTGTTTGATTTTGAATAGGATGACCATTTTGAAGACTGTGAGTTCAGTTTTATAGCCCTGGAATTTTCTTTTTTTATTTTTATCCTTGGAGGCGCCCTTGAAATTCTCTTAAACCTCTTCAATGTTGCTGTGTTGTGTTGTTGACATATTGACCTGTTAATAACGTGGTAAAAAAAAAAAAAAAAAA]
[+] EMBL AU029662 [TGCTCTGGCAGGCATGTATCCCAGCGTTCCGTTTGTATCTCCAAACGGCTTTCATCCACTCTGANATGAGTATGTTCAGGTAGTTGGTTAGTGCNATATGCATCTTTGAATATAAGAAGCATTAAGGGATTTTTATACGAGAGATTTGAAAACTGCTGAGACAGTAAAATGTTGGGAATTATGAGATACAAGAGGTGGGGATGCAAGGGGATGAAATCAGAGGCAATGCTTATTTGCAGTGCTGGCACTTCTAATATTTGTGGCCTGGAGAGTTACTTGATATATTGTTTAGGTTGTGTTTTGTTTGATTTTGAATAGGATGACCATTTTGAAGACTGTGAGTTCAGTTTTATAGCCCTGGAATTTTCTTTTTTTATTTTTATCCTTGGAGGCGCCCTTGAAATTCTCTTAAACCTCTTCAATGTTGCTGTGTTGTGTTGTTGACATATTGACCTGTTAATAACGTGGTAAAAAAAAAAAAAAAAAA]
[+] EMBL AU165958 [ GATTTTTATACGAGAGATTTGAAAACTGCTGAGACAGTAAAATGTTGGGAATTATGAGATACAAGAGGTGGGGATGCAAGGGGATGAAATCAGAGGCAATGCTTATTTGCAGTGTTGGCACTTCTAATATTTGTGGCCTGGAGAGTTACTTGATATATTGTTTAGGTTGTGTTTTGTTTGATTTTGAATAGGATGACCATTTTGAAGACTGTGAGTTCAGTTTTATAGCCCTGGAATTTTCTTTTTTTATTTTTATCCTTGGAGGCGCCCTTGAAATTCTCTTAAACCTCTTCAATGTTGCTGTGTTGTGTTGTTGACATATTGACCTGTTAATAACGTGGTAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11419#0 GCGAGTCCGCCCGCCGCCCGAGCTTATCTCCATCCTACGAGCAGCGGCGCCGGCTCCGGC 60
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 GTCGGCGTCCCCCTGCTCCTTCCGCCGCCTCCTCGCTCTCGCCGGCCCGTCCCTGGGGAA 120
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 TGCCCAGCTGAATTCAATGGCTCAAGTTACTGCGACCGCGAATGCTCGGGTGCTCGGTTT 180
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 TCCTGCCGCCAGCCGCCATGGTGGCCCTGTAGGATCGCGTGCTGGGCCGGCGTTTCTGAA 240
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 TCTGCGTGCTCCCGCACTTCGTCATGACAGTAAAAAGCATCCTTTGAGAGTTGGTGCTGC 300
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 CTCTTCATTATTCACAAAGTATGATCCTATCAAAGGCATCAAACCATTGCTGTCAATTGA 360
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 CAAGTTACGTCCTAGAACTCAAGTTGGCTGTCGAGCATCTTTATCATCATTCAGCTTCCC 420
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 TGAGTTGGAGACCAAACCTAGATGGTGGTGGAGGACCTTAGCGTGTGTCCCCTATCTTCT 480
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 GCCGCTGCACAACATGTGGTCCTTTGCAGATGCTGTGTACCAGCTTCATCCATACTTGCA 540
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 GCAGTTTGGGTTGTTCTATGCATTCATCGACACAATGGCGTTAGTCCCAGGATGGCTCTT 600
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 TCTGATGATCTTCATGACCGTCTACTTCTTTGTGGTCAGGCGGAAGTGGTTGCCACACTT 660
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 CTTGCGGTATCACGTCATATTGGCTATTCTCCTTGATACTGGTTCTCAAGCTCTGGCGAC 720
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 CATGTGCAACTGGAATCCAAGCATTGTTTATCAGGGTAAACCAATGGTGTTTTTCTGGAT 780
consensus_11419#1 ------------------------------------------------------------
consensus_11419#0 GACGATTGCCTTCATTCAGATATCCACAGTTCTTGAGTGCATGAGGTGTGCTCTGGCAGG 840
consensus_11419#1 ------------------------------------------------TGCTCTGGCAGG 12
************
consensus_11419#0 CATGTATCCCAGCGTTCCGTTTGTATCTC-AAACGGCTTTCATCCACTCTGATATGAGTA 899
consensus_11419#1 CATGTATCCCAGCGTTCCGTTTGTATCTCCAAACGGCTTTCATCCACTCTGANATGAGTA 72
***************************** ********************** *******
consensus_11419#0 TGTTCAGGTAGTTGGTTAGTGCAATATGCATCTTTGAATATAAGAAGCATTAAGGGATTT 959
consensus_11419#1 TGTTCAGGTAGTTGGTTAGTGCNATATGCATCTTTGAATATAAGAAGCATTAAGGGATTT 132
********************** *************************************
consensus_11419#0 TTATACGAGAGATTTGAAA-CTGCTGAGACAGTAAAATGTTGGGAATTATGAGGTACAAG 1018
consensus_11419#1 TTATACGAGAGATTTGAAAACTGCTGAGACAGTAAAATGTTGGGAATTATGAGATACAAG 192
******************* ********************************* ******
consensus_11419#0 AGGTGGGGATGCAAGGGGATGAAATCAGAGGCAATGCTTATTTGCAGTGTTGGCACTTTT 1078
consensus_11419#1 AGGTGGGGATGCAAGGGGATGAAATCAGAGGCAATGCTTATTTGCAGTGCTGGCACTTCT 252
************************************************* ******** *
consensus_11419#0 AATATTTGTGGCCTGGAGAGTTACTTGATATATTGTTTAGGTTGTGTTTTGTTTGATTTT 1138
consensus_11419#1 AATATTTGTGGCCTGGAGAGTTACTTGATATATTGTTTAGGTTGTGTTTTGTTTGATTTT 312
************************************************************
consensus_11419#0 GAATAGGATGACCATTTTGAAGACTGTGAGTTCAGTTTTAAAAAAAAAAAA--------- 1189
consensus_11419#1 GAATAGGATGACCATTTTGAAGACTGTGAGTTCAGTTTTATAGCCCTGGAATTTTCTTTT 372
**************************************** * **
consensus_11419#0 ------------------------------------------------------------
consensus_11419#1 TTTATTTTTATCCTTGGAGGCGCCCTTGAAATTCTCTTAAACCTCTTCAATGTTGCTGTG 432
consensus_11419#0 -------------------------------------------------------
consensus_11419#1 TTGTGTTGTTGACATATTGACCTGTTAATAACGTGGTAAAAAAAAAAAAAAAAAA 487
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||