These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 3003 fasta sequence [TCTCGCTCGCTCTCGCGTTGCGCCTGCGCCCCTTCCACCCCGCAGCCGCCGGCCGCTTCCAATTCGACTCCTCCCCCTCGCCGCCGCGGAAGCCGCCGGGCCGCGCGCCGCCGCCGATTCCCCGGCGGATTCGAGAGACTCGTCCGCCGATCAGAGGAGAGGAGAGGAGGCACCCGCCTCCAGGAGTAGAGGAGGAGGAGGAGGCGGCGTGAATTTGTTTTTTTTTTCTTTTTTGGTGTGTGTGGGTGTGTGAATTGCGGTTCGTGTGGTTCGTGTCTAGTGGGTGAGGCACCCCCCCTAGGGTTTGAGGGCGGCCTCGCTAGGGTTTGGGCCCCCCCGCGCGAGGGGAGGGAGGAGGAGGCTGCCCTAGCGGAGGAGGAGGTGGAGGTCGCCCCCTGGTGTTGTGGGGAGGAGGAGGCGGCTGAGGCGGAGGTCGGTGTGGTGTGGTTGTGGTGTCGCATTGCGGAGGACGATTGATTGTGCTGGTGGGCGCTGATTGGATCGGAGGGAGGAGGAGGAGCCATCCCTCTCTCCCCGCCGTTGCTAGGTGGGTAGATGGTGAGAGGCGCCGGCTGCCATGGAGCAGGACTTACCGGCGCTCAAGCCGCAATGGCTGGTGCAGGGCCAGGTCACCACCACGGGAGCCGCCAACCTCTGGACCGTAGCTTCGCCCCGCCCAGGCCCAGATAACCAAGGTAGGGGTGGTTCATCAAGGAACCATTCATCATCTGGCCACCACCGTGACCAGAATTCTAGGACATCTTCGTCACGGATTTCCTCAAATGGGCCCCGTAAACATGACCGGGACCGGGATGGTATGGGAAAGTCGAGGGGTTATGCAAGTTTTGGTAGAAACAGGGAAAGGGAGCGAGAGAAAGAATTTGACTCCCGTGACAGAGAGAGTAGGTCCATTACAGCAGACGGTTTTGGGTCGTTTAGTACATGTAGACCGGAAAGGGATAGATTGAATCGTTCCCGCTCGAGGACAGATTCATGGAATAAAGGTGTAGTTAGTCCAAATAATTGTAATACCTCTAGAAACAATACTGGTACTGGTGGCTCCTTTGAACGAGAATTTCCACAGCTGCCTTTTGATGACAAGAGGCAAGATATCAACAGAGTACCATCTCCTGCCTCTCCAATTCAGAGAACTGTTGCACCGGATCGTTGGAATTCACTGCTAGCGGATGTCCCTGGCTCAAGTGAGCCAAAGAAAAACCTGGGTGTATCTTCTGTATTACGACCGGCTCCTAGTAAACAGCCTGAGGCAGCGCCGAACAGCGGGATCTCATTGAGCATGGCGGAGACTGTGATGCAAGTTCCTTTGTCAGTTGGGCCTCAGTTATCGATGGAAGCCCAAAAGATGGAAGAAATCAGTTTAAGACAGAACACTCTAAGGCCTATGACATCTCCAGCAATCAAATCTTCAGTAACAAATTCTTCAAAAACAAAAGGTGTGAGAAATGGAGATCCTTCTGGTCCCATCAAGGCACATCAATCATTAATACCGTCCACAAATGGCTCTGCTCGAGCTCCAGTTAAAACTGATCTTTCAAAGGTATCTCACGCAGGAAATCTAAAAATCCTCACCCGAGAGCAAAACTGTACTATACACACTGCCAAAGACTGTCCTGACAATCCTATGAGTCCTCCTCCAGCTCCTGTTGCTTCAGTGGAACCACTGAAAAAGCCATGTGTTAGCCAAAAGCTTAAGGTTGCCACCCATGACATTCCTCTCTCTATACTGCAAAGTGCTTATGTAGATAAAAAATTAAATGCAAGAGATAAGCATAGATTCTTTGAGTCGTTGAGGATCAAGTCTTCAAATGGTTCAAGCTCAACTGCTGAGTCAGGTTGTCCATCACCATCCAGTGTAGCTGATGTGAAACAAGATTCTTGTCTTAATGTTGGAAAAGATGTATCCTTGTATCATTCTGGAAAAGATATATCCTTATATCATTCTGGAACAAAATGTATGGGAAATGGAAAGTGTTCCTGTGAAGAAGCAAATTCTTCTGATGGATCTCAGAGGCATCTGTCTGATAATGAGAACAATTCATCCTTGGATCACACTGCAGATGGGGTTTCTCAGAATCTTCTAGTAGAAAGCAGGTCCATCTCATCATCTGAACCTTCTGATAGGGGAGATGAATTCCGGGTGTTCCTATCAAACAATACCGAAGGCAGTTCATCGTCAGCACCTGCTGATTCAGATGATGGGTACAAGAGATCCCAGTCTGGCAGTGAGGAGGCTAGTTCATCCTCAGAGACTACCGAACCAGGAGATGAGGAG-CATCCAGCT-GAGGATAG-TCTTCCTGCTGATTTTGTGGCTTTCATGATAT-CTCTTGGCTGGG-AAAAAGA-CAAAAAGGTGGAACCTTT-GGGACTGGAAGAGATTGCTGTCACTGTGAGGGCTAATGAGGAGCTAGAGCAGAAACTTTTGTCCATGGAAGACAATGCCAACATCAAGATCGTTCTCCTGTATATCTATTCGGGCA-GAGGGCT-GGATAAGGAGCTGATGAAGCCTA-ACGCA-GGGGATAAAA-ACAATGCTTGAAGAACGCA-GGTG-CTA-GGGAGTAAGGCCACA-GTAGCTATCTG-C-AAAAAAATG-CATTG-CCAATC-ACACATCAGTGAG-CAATTGGGCGTTGGTTTTGTTTGGATGCTGAGAAGACA-GGTAGCA-AAGGGAGTCTTGGCCTGAATT-T-TGTCTTAGA-TTAACAAGTCAAGA-TTATTTTTTTTCCTCTATTGAGGCTTGTCCAGCAATTTGGGGAGGTGGGGGTT-CA-CTGGTAGCTCTGA-C-ATT-TTTTGCTTGATAAAACA-GAGGAAGTT-TAGGATTTGTCGTCTT-TTTCCCAGGAATA--CC--A-AATGTAAGTCCGGTTATTGGAGGCGCATGGCTGTGCTGTCCTTTAAAAAGAATAGGTTCAAGTTTTCCCCCTTCTCAGGGCTTATCTTTGTTTTGGAAAAAGATAAGATGGGTTTTTAACATGAGGAAAGGTGAATAGTTATATTGGTCTCAAAAAA] [+] EMBL AK102754 [TCTCGCTCGCTCTCGCGTTGCGCCTGCGCCCCTTCCACCCCGCAGCCGCCGGCCGCTTCCAATTCGACTCCTCCCCCTCGCCGCCGCGGAAGCCGCCGGGCCGCGCGCCGCCGCCGATTCCCCGGCGGATTCGAGAGACTCGTCCGCCGATCAGAGGAGAGGAGAGGAGGCACCCGCCTCCAGGAGTAGAGGAGGAGGAGGAGGCGGCGTGAATTTGTTTTTTTTTTCTTTTTTGGTGTGTGTGGGTGTGTGAATTGCGGTTCGTGTGGTTCGTGTCTAGTGGGTGAGGCACCCCCCCTAGGGTTTGAGGGCGGCCTCGCTAGGGTTTGGGCCCCCCCGCGCGAGGGGAGGGAGGAGGAGGCTGCCCTAGCGGAGGAGGAGGTGGAGGTCGCCCCCTGGTGTTGTGGGGAGGAGGAGGCGGCTGAGGCGGAGGTCGGTGTGGTGTGGTTGTGGTGTCGCATTGCGGAGGACGATTGATTGTGCTGGTGGGCGCTGATTGGATCGGAGGGAGGAGGAGGAGCCATCCCTCTCTCCCCGCCGTTGCTAGGTGGGTAGATGGTGAGAGGCGCCGGCTGCCATGGAGCAGGACTTACCGGCGCTCAAGCCGCAATGGCTGGTGCAGGGCCAGGTCACCACCACGGGAGCCGCCAACCTCTGGACCGTAGCTTCGCCCCGCCCAGGCCCAGATAACCAAGGTAGGGGTGGTTCATCAAGGAACCATTCATCATCTGGCCACCACCGTGACCAGAATTCTAGGACATCTTCGTCACGGATTTCCTCAAATGGGCCCCGTAAACATGACCGGGACCGGGATGGTATGGGAAAGTCGAGGGGTTATGCAAGTTTTGGTAGAAACAGGGAAAGGGAGCGAGAGAAAGAATTTGACTCCCGTGACAGAGAGAGTAGGTCCATTACAGCAGACGGTTTTGGGTCGTTTAGTACATGTAGACCGGAAAGGGATAGATTGAATCGTTCCCGCTCGAGGACAGATTCATGGAATAAAGGTGTAGTTAGTCCAAATAATTGTAATACCTCTAGAAACAATACTGGTACTGGTGGCTCCTTTGAACGAGAATTTCCACAGCTGCCTTTTGATGACAAGAGGCAAGATATCAACAGAGTACCATCTCCTGCCTCTCCAATTCAGAGAACTGTTGCACCGGATCGTTGGAATTCACTGCTAGCGGATGTCCCTGGCTCAAGTGAGCCAAAGAAAAACCTGGGTGTATCTTCTGTATTACGACCGGCTCCTAGTAAACAGCCTGAGGCAGCGCCGAACAGCGGGATCTCATTGAGCATGGCGGAGACTGTGATGCAAGTTCCTTTGTCAGTTGGGCCTCAGTTATCGATGGAAGCCCAAAAGATGGAAGAAATCAGTTTAAGACAGAACACTCTAAGGCCTATGACATCTCCAGCAATCAAATCTTCAGTAACAAATTCTTCAAAAACAAAAGGTGTGAGAAATGGAGATCCTTCTGGTCCCATCAAGGCACATCAATCATTAATACCGTCCACAAATGGCTCTGCTCGAGCTCCAGTTAAAACTGATCTTTCAAAGGTATCTCACGCAGGAAATCTAAAAATCCTCACCCGAGAGCAAAACTGTACTATACACACTGCCAAAGACTGTCCTGACAATCCTATGAGTCCTCCTCCAGCTCCTGTTGCTTCAGTGGAACCACTGAAAAAGCCATGTGTTAGCCAAAAGCTTAAGGTTGCCACCCATGACATTCCTCTCTCTATACTGCAAAGTGCTTATGTAGATAAAAAATTAAATGCAAGAGATAAGCATAGATTCTTTGAGTCGTTGAGGATCAAGTCTTCAAATGGTTCAAGCTCAACTGCTGAGTCAGGTTGTCCATCACCATCCAGTGTAGCTGATGTGAAACAAGATTCTTGTCTTAATGTTGGAAAAGATGTATCCTTGTATCATTCTGGAAAAGATATATCCTTATATCATTCTGGAACAAAATGTATGGGAAATGGAAAGTGTTCCTGTGAAGAAGCAAATTCTTCTGATGGATCTCAGAGGCATCTGTCTGATAATGAGAACAATTCATCCTTGGATCACACTGCAGATGGGGTTTCTCAGAATCTTCTAGTAGAAAGCAGGTCCATCTCATCATCTGAACCTTCTGATAGGGGAGATGAATTCCGGGTGTTCCTATCAAACAATACCGAAGGCAGTTCATCATCAGCACCTGCTGATTCAGATGATGGGTACAAGAGATCCCAGTCTGGCAGTGAGGAAGCTAGTTCATCCTCAGAGACTACCGAACCAGGAGATGAGGAG CATCCAGCT GAGGATAG TCTTCCTGCTGATTTTGTGGCTTTCATGATAT CTCTCGGCTGGG AAAAAGA CAAAAAGGTGGAACCTTT GGGACTGGAAGAGATTGCTGTCACTGTGAGGGCTAATGAGGAGCTAGAGCAGAAACTTTTGTCCATGGAAGACAATGCCAACATCAAGATCGTTCTCCTGTATATCTATTCGGGCA GAGGGCT GGATAAGGAGCTGATGAAGCCTA ACGCA GGGGATAAAA ACAATGCTTGAAGAACGCA GGTG CTA GGGAGTAAGGCCACA GTAGCTATCTG CAAAAAAAATG CATTG CCAATC ACACATCAGTGAG CAATTGGGCGTTGGTTTTGTTTGGATGCTGAGAAGACA GGTAGCA AAGGGAGTCTTGGCCTGAATT T TGTCTTAGA TTAACAAGTCAAGA TTATTTTTTTTCCTCTATTGACGCTTGTCCAGCAATTTGGGGAGGTGGGGGTT CA CTGGTAGCTCTGA CAATT TTTTGCTTGATAAAACA GAGGAAGTT TAGGATTTGTCGTCTT TTTCCCAGGAATA CCA A AATGTAAGTCCGGTTATTGGAGGCGCATGGCTGTGCTGTCCTTTAAAAAGAATAGGTTCAAGTTTTCCCCCTTCTCAGGGCTTATCTTTGTTTTGGAAAAAGATAAGATGGGTTTTTAACATGAGGAAAGGTGAATAGTTA ] [+] EMBL CB628898 [ TGGTTCGTGTCTAGTGGGTGAGGCACCCCCCCTAGGGTTTGAGGGCGGCCTCGCTAGGGTTTGGGCCCCCCCGCGCGAGGGGAGGGAGGAGGAGGCTGCCCTAGCGGAGGAGGAGGTGGAGGTCGCCCCCTGGTGTTGTGGGGAGGAGGAGGCGGCTGAGGCGGAGGTCGGTGTGGTGTGGTTGTGGTGTCGCATTGCGGAGGACGATTGATTGTGCTGGTGGGCGCTGATTGGATCGGAGGGAGGAGGAGGAGCCATCCCTCTCTCCCCGCCGTTGCTAGGTGGGTAGATGGTGAGAGGCGCCGGCTGCCATGGAGCAGGACTTACCGGCGCTCAAGCCGCAATGGCTGGTGCAGGGCCAGGTCACCACCACGGGAGCCGCCAACCTCTGGACCGTAGCTTCGCCCCGCCCAGGCCCAGATAACCAAGGTAGGGGTGGTTCATCAAGGAACCATTCATCATCTGGCCACCACCGTGACCAGAATTCTAGGACATCTTCGTCACGGATTTCCTCAAATGGGCCCCGTAAACATGACCGGGACCGGGATGGTATGGGAAAGTCGAGGGGTTATGCAAGTTTTGGTATAAACAGGGAAAGGGAGCGAGAGAAAGAATTTGACTCCCGTGACAGAGAGAGTAGGTCCATTACAGCAGACGGTTTTGGGTCGTTTAGTACATGTAGACCGGACAGGGATAGATTGAATCGTTCCC ] [+] EMBL CA763871 [ ACTGTCCTGACAATCCTATGAGTCCTCCTCCAGCTCCTGTTGCTTCAGTGGAACCACTGAAAAAGCCATGTGTTAGCCAAAAGCTTAAGGTTGCCACCCATGACATTCCTCTCTCTATACTGCAAAGTGCTTATGTAGATAAAAAATTAAATGCAAGAGATAAGCATAGATTCTTTGAGTCGTTGAGGATCAAGTCTTCAAATGGTTCAAGCTCAACTGCTGAGTCAGGTTGTCCATCACCATCCAGTGTAGCTGATGTGAAACAAGATTCTTGTCTTAATGTTGGAAAAGATGTATCCTTGTATCATTCTGGAAAAGATATATCCTTATATCATTCTGGAACAAAATGTATGGGAAATGGAAAGTGTTCCTGTGAAGAAGCAAATTCTTCTGATGGATCTCAGAGGCATCTGTCTGATAATGAGAACAATTCATCCTTGGATCACACTGCAGATGGGGTTTCTCAGAATCTTCTAGTAGAAAGCAGGCCCATCTCATCATCTGAACCTTCTGATAGGGGAGATGAATTCCGGGTGTTCCTATCAAACAATACCGAANGCAGNTCATCGTCAGCACCTGCTGATTCAGATGATGGGTACAAGAGATCCCAGTCTGGCAGTGAGGAGGCTAGNTCATCCTCAGAGACTACCGAACCAGGAGATGAGGAGCCTTCCAGCTGGGGGAAAGNCCTTCCTGCTGATTTTGGGGCNTTCATGAAATCCNCTTGGCTGGGNAAAAANACCAAAAAGGNGGAACCTTTNGGAACTGGAAAANATTGCTGNCNCT TGGGG ] [-] EMBL CB628899 [ CATCGTCAGCACCTGCTGATTCAGATGATGGGTACAAGAGATCCCAGTCTGGCAGTGAGGAGGCTAGTTCATCCTCAGAGACTACCGAACCAGGAGATGAGGAG CATCCAGCT GAGGATAG TCTTCCTGCTGATTTTGTGGCTTTCATGATAT CTCTTGGCTGGG AAAAAGA CAAAAAGGTGGAACCTTT GGGACTGGAAGAGATTGCTGTCACTGTGAGGGCTAATGAGGAGCTAGAGCAGAAACTTTTGTCCATGGAAGACAATGCCAACATCAAGATCGTTCTCCTGTATATCTATTCGGGCA GAGGGCT GGATAAGGAGCTGATGAAGCCTA ACGCA GGGGATAAAA ACAATGCTTGAAGAACGCA GGTG CTA GGGAGTAAGGCCACA GTAGCTATCTG C AAAAAAATG CATTG CCAATC ACACATCAGTGAG CAATTGGGCGTTGGTTTTGTTTGGATGCTGAGAAGACA GGTAGCA AAGGGAGTCTTGGCCTGAATT T TGTCTTAGA TTAACAAGTCAAGA TTATTTTTTTTCCTCTATTGAGGCTTGTCCAGCAATTTGGGGAGGTGGGGGTT CA CTGGTAGCTCTGA CAATT TTTTGCTTGATAAAACA GAGGAAGTT TAGGATTTGTCGTCTT TTTCCCAGGAATA CCA A AATGTAAGTCCGGTTATTGGAGGCGCATGGCTGTGCTGTCCTTTAAAAAGAATAGGTTCAAGTTTTCCCCCTTCTCAGGGCTTATCTTTGTTTTGGAAAAAGATAAGATGGGTTTTTAACATGAGGAAAGGTGAATAGTTATATTGGTCTCA ] [+] EMBL BI812264 [ TGA TTTGT GCCTTCATGATAT CTC TGCCT GG AAAAAGA CCAAAAGGTGGAACCTTG GGGACTGGAAGAGATTGCTGTCACTGTGAGGCCTAATGAGGAGCTAGACCAGAAACTTTTGTCCATGGAAGAC ATGCC ACATCAAGATCGTTCTCCTGTATATCTATTCGGGCACGAGGGCT GGATAAGGAGCTGATGAAGCCTA ACGCA GGGGATAAAA AC ATGCTTGAAGAACGCACGGTG CTA GGGAGTAA GCCACA GTAGCTATCTG C AAAAAATG CATTG CC ATC ACACATCAGTGAG CCATTGGGCGCTTGTTTTGTTTGGATGCTGAGAAGACACGGTAGCACAAGGGAGTCTTGGCCTGAATT T TGTCTTAGA TTAACAAGTCAAGA TTATTTTTTTTCCTCTATTGAGGCTTGTCCAGC ATTTGGGGA GTGGGGGTT CA CTGGTAGCTCTGA C ATT TTTTGCTTGATAAAACA GAGGAAGTT TAGGATTTGTCGTCTT TTTCCCAGGAATA CC A AATGTAAGTCCGGTTATTGGAGGCGCATGGCTGTGCTGTCCTTTAAAAAGAATAGGTTCAAGTTTTCCCCCTTCTCAGGGCTTATCTTTGTTTTGGAAAAAGATAAGATGGGTTTTTAACATGAGGAAAGCTGCATAGTTATATTGGTCTCAAAAAA] [+] EMBL BI813476 [ CGTTCTCCTGTATATCTATTCGGGCACGAGGGCTCGGATAAGGAGCTGATGAA CCTATACGCACGGGGATAAAACACCATGCTTGAAGAACGCC GGTGCCTACGGGAGTAAGGCCACACGTAGCTATCTGCC AAAATAATGCCCTTGCCCAATCTACACATCAGTGAGCCCATTGGGCGTTGGTTTTGTTTGGATGCTGAGAAGACA GGTAGCC AAGGGAGTCTTGGCCTGAATTCTCTGTCTTAGACTTAACAAGTCAAGACTTATTTTTTTTCCTCTATTGAGGCTTGTCCAGCAATTTGGGGAGGTGGGGGTTCCA CTGGTAGCTCTGA C ATT TTTTGCTTGATAAAACC GAGGAAGTT TAGGATTTGTCGTCTT TTTCCCAGGAATA CCCTACAATGTAAGTCCGGTTATTGGAGGCGCcaaaaaaaa ] [+] EMBL BI802809 [ TGGTTTTGTTTGGATGCTGAGAAGACA GGTAGCA AAGGGAGTCTTGGCCTGAATT T TGTCTTAGA TTAACAAGTCAAGA TTATTTTTTTTCCTCTATTGAGGCTTGTCCAGC ATTTGGGGAGGTGGGGGTT CA CTGGTAGCTCTGA C ATT TTTTGCTTGATAAAACA GAGGAAGTT TAGGATTTGTCGTCTT TTTCCCAGGAATA CC A AATGTAAGTCCGGTTATTGGAGGCGCATGGCTGTGCTGTCCTTTAAAAAGAATAGGTTCAAGTTTTCCCCCTTCTCAGGGCTTATCTTTGTTTTGGAAAAAGATAAGATGGGTTTTTAACATGAGGAAAGGTGAATAGTTATATTGGTCTCAAAA ] [+] EMBL BI808494 [ GGCTTGTCCAGCAATTTGGGGA GTGGGGGTT CACCTGGTAGCTCTGACC ATTGTTTTGCTTGATAAAACACGAGGAAGTTGTAGGATTTGTCGTCTTGTGTCCCAGGAATAGCCC A AATGTAAGTCCGGTTATTGGAGGCGCATGGCTGTGCTGTCCTTTAAAAAGAATAGGTTCAAGTTTTCCCCCTTCTCAGGGCTTATCTTTGTTTTGGAAAAAGATAAGATGGGTTTTTAACATGAGGAAAGGTGAATAGTTA ] [+] EMBL BI812225 [ ATTTGGGGA GTGGGGGTT CA CTGGTAGCTCTGA C ATT TTTTGCTTGATAAAACA GAGGAAGTT TAGGATTTGTCGTCTT TTTCCCAGGAATA CC A AATGTAAGTCCGGTTATTGGAGGCGCATGGCTGTGCTGTCCTTTAAAAAGAATAGGTTCAAGTTTTCCCCCTTCTCAGGGCTTATCTTTGTTTTGGAAAAAGATAAGATGGGTTTTTAACATGAGGAAAGGTGAATAGTTATATTGGTCTCAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||